rna5971, rna5971 (mRNA) Nannochloropsis gaditana

Overview
Namerna5971
Unique Namerna5971
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3284
Alignment locationCM002467.1:246089..247700 +

Link to JBrowse

Properties
Property NameValue
Productyippee-like protein
Orig transcript idgnl|cribi|Naga_100978g2.1500.mrna
Orig protein idgnl|cribi|Naga_100978g2.1500
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:246089..247700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100978g2gene5769Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5971rna5971-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24716.1cds5956Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5971 ID=rna5971|Name=rna5971|organism=Nannochloropsis gaditana|type=mRNA|length=3284bp
GCGTAGCTCCTGTTCTGTCATAGCTGGCTTTTTCCCTTTCGCGAACCCCT
TAAAATGGATCAAGAGGACCTCCAAATCCTCGACGAGAATCCTCACGAGG
TATTGGCGACATTTAAAAGTGCATATGAATCCCAAACATAAAACTGTCAC
AGCGCAAGGTATTTAATTTCGTACTTTTGGAAGCCCGTGGGTTCATAGAA
TATCCAGCTGCTCTGTACAGGAGTGGGGAGGTTATGCCTGAAACACCGTC
TAAGGATTAAGACATGACCGTCCTCCACAATTGCTTTCCACGCGCTCGAC
ACAAGTTCCTACTGGCTTGCGATAATCCCACTTCAAATCCTCAATTTACC
TGCTCGTGACTGGATCCAGGCAGTGAATCAGCATGAAAGCTGGCCTGGAG
GGTGAGAAGGGACTGTTGACTCCCGTCCTCTCCTCCCATTCACCTTAAAT
TGGATTTCAACCACATATGACTTGATATAGACTCTATACATCTTTTACAC
CCTCTTTGCCCCCCCGTCCTTCTTTTTAGCGCTCTGCACTCTTTCGTACT
GGCCTGTACGGATTTCTCAAGCGGTTTTTCCCCTCCAGAGTCTCCTTCAC
TCGCCATCAGGGTCTTTGGTAATACAGGTCTTCTCAAGAATGTACTTCCC
CTCCTTGTACTTCTGCGACTCCTCAAAAGCCTCCTCGTACTTCCATCCCA
GTAAGGCCTGGGAGAGTGTATGATTGCCGCGTGGGCGTCGGAGCACACAG
AGGGGGCACGGGTGAGAAACATTAGACAGAAGGACTTTTAGGGAAATTGC
ATTGCATCGCACCTTGTCTTCTCCTGCGCTTTCATGCAAAAGCAGTCACG
ACATAGTCGCACACCATCCAATCCACCCCATGCTCCTCGACTACCAGGTG
CTAGACTCCCGCCTCGCTCAAGAGAACCCTCCTTTTCCACCGTCATATTC
CCGTGACCATAGACCCGTTCTCTTCCCATACCCTACCTGGCAATCCAAGC
AAAAGATGTCCGCAACAGTGTGTAAACCCGTAATGAGCATCCGTTTCTCG
TGCTGTCCCGTCGTGACATTGATGCTGTACGTGGGGAGGACGAATTCACC
TCAGACGCTCTTGCCCGGACCTCATGGCACATCAGCCATCTTTCACTGAA
TCTCCAAACAAAGTACTCACACTTTATCGTACAAAAAAGCACGGCCTCCA
CGGCCCGTGAATTGCTTTGATATTATTTGGTCATTCGTCGACAGGTGCGT
CCAGCATTGAGAGCAGCACCAGATTTGAGGCCCGTCAAGGTACCTAGATG
CAGACGAAGCCAGGAAAGAAAGGCACAATTGGAGCATGGTGCAAGCAAGA
AGGGGTAATATGGCACACGATTTTACCTTTTGAAGAGGCGCCCCATTTTT
GAAACGCTTGATACACAGACGTCTGTGCTCAAGCACAAACCGGAACTTGT
CTGGAACAATTAGTGGCTATTCGATGCCGAAGCAACTGACACTCCCACTG
CCGACAACTGCCGCTTCTTATTGAAGTTATTGGACGTTTCCTGGCACCAT
GTGCTGACTGTTGTTTTGAAGGATAATGGGGGTGGATGCCGCGAGGAAGG
AGGTGGACATCACATCTCTCAAGTTCTTCCCATTGCGTCGTTTAAAGGCA
AACAAACATAGCTTCTCAAGAATTCTACTCATCACATGCAAGCTATTGAA
CACATACTTGTACAGTGTCATGTCTGCTCCGTAACACACTGATTTCAGCG
CCGCAACCCCGCAGATTGGGGGGTGTACTTGAACAGATGACGCGATGCCG
TGGATGTGATGGAATATGCCCCTTCGTCTCCCACCCAATAGGATCCCTAT
ATTATACACCGCACGTTGTCCTACGACTGACTTTTAATGGAAATATACAT
GTTTACTCCACAGGAAAGCCCGTTGTTGCGTCCTTCCCACGGAAATATGT
CGATCGGGGGCATGTTTTTAGCCCATGAGATGGGCACTGATCCTCATTAC
CCTTCGTTCTTTGAGGTTTTCATGCAGGATCGTATCCATCAAAGTCTTAA
ACCGGCCGTCCGCCACGTCTTCCTCGTTCTTGCCGAACGTTGGCCACAAG
CTGTGGTTCTTCTTGACCACTTGGATGAAGTTTTTGCGATCATGTCTCTT
TTTCTGGAGAGGCACTACCTAGCCAAGAACGATGCTCTCTTTTCCGAGTC
CCTGTACGGATTCAAACGATCGCGGTACCGCTCCCAGGAAGGGACAGGCC
CAAGAAATGAGCAACATAGAAAAGCAGACAACAGTAATACCAGTAATGTG
ACCGGGCAATCCGAACATATGAAGATGAGCGCTTTGACGCAAGGGGACCG
GCGGTTGGCTTTGTTGGTGACAATACTGGCACCGTATGCGAAGGCAAAAT
TGGACGCTTTGTACATACATTACAAGGACACTCTTCTACCGTCTCCAGTC
GTCAATCGGAGGTCGTGGTGGGGCGGAAATGGGTCGAGTCGGGGGCAAGG
GAGGCGTTGGAGAAGTGGAAGGGGCGAGTCCGGCACGGCGGGCGGGGCCG
CGCATTCGGGCGTAGAGGGGGAAGAAGATGAGCAAAAGGAGGAGATACGC
GTCCGTCTCCGTCGTGTCTTTGTGGCCATGTACCCCTTGCTGCACGCGGC
CTACGAAGGCTCCTTTTTCGTCTACCAGTGGACCTATCTCCTCGGCCGGC
GCAAGCAATATTCCCCCCTCCTCCACATCGCCGGACAAGTCTTGCGCCGC
CTCTCCCAGGAGGACGTGCAACCTCCCGCCCCCTCCATCACGGAAAAGAA
GAGCCTGACGGCCCGGCTGGTCCGCTCCTTCAAAGTCCTCCTGCTACTGG
GCATCGTTGCCTTCAAGCTTCTCGAATGGTGGATGTCCTCCCCCGACTTT
CTCCAATCCCCCCGACAAAAACGCATCGTCCCGCCCGTCCCCGACCCTCC
CGCGCCCGCCCCCACCGGAGTGCCTTTGCCCAAGGACGCAGTCCTCTGCC
CGCTCTGTCTCCGTCCACGGGTCAATCCAGCCGTCACCTCGGCCGGCGTC
GTCTTCTGCTACAAGTGCCTCCTCCCCGAGGTCCGAAAGGCAGGGGTGTG
TCCGGTCACCTTGCAGCCTTGCCGGGAGGAACAGGTGCGACGAATATATC
TGACTTAAAAATAGGAACGCGCGGCTGTTGAATCATGTACATACGGGTGT
AAAGAGGAACTGTTTGAGGTGGGAGGTGGGGAAGCTGCCCGCGCGAGGCT
GATTAGAGGGGAAGGAAACGTCGACGGGCAACGA
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protein sequence of rna5971

>rna5971-protein ID=rna5971-protein|Name=rna5971|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MLQLCLSFLASSASRYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRA
FLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQ
KYKEGKYILEKTCITKDPDGE
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mRNA from alignment at CM002467.1:246089..247700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5971 ID=rna5971|Name=rna5971|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp|location=Sequence derived from alignment at CM002467.1:246089..247700+ (Nannochloropsis gaditana)
TAGCTTGCATGTGATGAGTAGAATTCTTGAGAAGCTATGTTTGTTTGCCT
TTAAACGACGCAATGGGAAGAACTTGAGAGATGTgatgtccacctccttc
ctcgcggcATCCACCCCCATTATCCTTCAAAACAACAGTCAGCACATGGT
GCCAGGAAACGTCCAATAACTTCAATAAGAAGCGGCAGTTGTCGGCAGTG
GGAGTGTCAGTTGCTTCGGCATCGAATAGCCACTAATTGTTCCAGACAAG
TTCCGGTTTGTGCTTGAGCACAGACGTCTGTGTATCAAGCGTTTCAAAAA
TGGGGCGCCTCTTCAAAAGGTAAAATCGTGTGCCATATTACCCCTTCTTG
CTTGCACCATGCTCCAATtgtgcctttctttcctggCTTCGTCTGCATCT
AGGTACCTTGACGGGCCTCAAATCTGGTGCTGCTCTCAATGCTGGACGCA
CCTGTCGACGAATGACCAAATAATATCAAAGCAATTCacgggccgtggag
gccgtgctttTTTGTACGATAAAGTGTGAGTACTTTGTTTGGAGATTCAG
TGAAAGATGGCTGATGTGCCATGAGGTCCGGGCAAGAGCGTCTGAGGTGa
attcgtcctccccacgtACAGCATCAATGTCACGACGGGACAGCACGAGA
AACGGATGCTCATTACGGGTTTACACACTGTTGCGGACATCTTTTGCTTG
GATTGCCAGGTAGGGTATGGGAAGAGAACGGGTCTATGGTCACGGGAATA
TGacggtggaaaaggagggttcTCTTGAGCGAGGCGGGAGTCTAGCACCT
GGTAGTCGAGGAGCATGGGGTGGATTGGATGGTGTGCGACTATGTCGTGA
CTGCTTTTGCATGAAAGCGCAGGAGAAGACAAGGTGCGATGCAATGCAAT
TTCCCTAAAAGTCCTTCTGTCTAATGTTTCTCACCCGTGCCCCCTCTGTG
TGCTCCGACGCCCACGCGGCAATCATACACTCTCCCAGGCCTTACTGGGA
TGGAAGTACGAGGAGGCTTTTGAGGAGTCGCAGAAgtacaaggaggggaa
gtaCATTCTTGAGAAGACCTGTATTACCAAAGACCCTGATGGCGAGTGAA
GGAGACTctggaggggaaaaaccGCTTGAGAAATCCGTACAGGCCAGTAC
GAAAGAGTGCAGAGCGCTAAaaagaaggacgggggggcaaAGAGGGTGTA
AAAGATGTATAGAGTCTATATCAAGTCATATGTGGTTGAAATCCAATTTA
AGGtgaatgggaggagaggacgggagtCAACAGtcccttctcaccctcca
GGCCAGCTTTCATGCTGATTCACTGCCTGGATCCAGTCACGAGCAGGTAA
ATTGAGGATTTGAAGTGGGATTATCGCAAGCCAGTAGGAACTTGTGTCGA
GCGCGTGGAAAGCAATTGTGGAGGACGGTCATGTCTTAATCCTTAGACGG
TGTTTCAGGcataacctccccactcctgTACAGAGCAGCTGGATATTCTA
TGAACCCACGGGCTTCCAAAAGTACGAAATTAAATACCTTGCGCTGTGAC
AGTTTTATGTTTGGGATTCATATGCACTTTTAAATGTCGCCAATACCTCG
TGAGGATTCTCG
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Coding sequence (CDS) from alignment at CM002467.1:246089..247700+

>rna5971 ID=rna5971|Name=rna5971|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002467.1:246089..247700+ (Nannochloropsis gaditana)
ATGCTCCAATtgtgcctttctttcctggCTTCGTCTGCATCTAGGTACCT
TGACGGGCCTCAAATCTGGTGCTGCTCTCAATGCTGGACGCACCTGTCGA
CGAATGACCAAATAATATCAAAGCAATTCacgggccgtggaggccgtgct
ttTTTGTACGATAAAGTCATCAATGTCACGACGGGACAGCACGAGAAACG
GATGCTCATTACGGGTTTACACACTGTTGCGGACATCTTTTGCTTGGATT
GCCAGGCCTTACTGGGATGGAAGTACGAGGAGGCTTTTGAGGAGTCGCAG
AAgtacaaggaggggaagtaCATTCTTGAGAAGACCTGTATTACCAAAGA
CCCTGATGGCGAGTGAATGCTCCAATtgtgcctttctttcctggCTTCGT
CTGCATCTAGGTACCTTGACGGGCCTCAAATCTGGTGCTGCTCTCAATGC
TGGACGCACCTGTCGACGAATGACCAAATAATATCAAAGCAATTCacggg
ccgtggaggccgtgctttTTTGTACGATAAAGTCATCAATGTCACGACGG
GACAGCACGAGAAACGGATGCTCATTACGGGTTTACACACTGTTGCGGAC
ATCTTTTGCTTGGATTGCCAGGCCTTACTGGGATGGAAGTACGAGGAGGC
TTTTGAGGAGTCGCAGAAgtacaaggaggggaagtaCATTCTTGAGAAGA
CCTGTATTACCAAAGACCCTGATGGCGAGTGAATGCTCCAATtgtgcctt
tctttcctggCTTCGTCTGCATCTAGGTACCTTGACGGGCCTCAAATCTG
GTGCTGCTCTCAATGCTGGACGCACCTGTCGACGAATGACCAAATAATAT
CAAAGCAATTCacgggccgtggaggccgtgctttTTTGTACGATAAAGTC
ATCAATGTCACGACGGGACAGCACGAGAAACGGATGCTCATTACGGGTTT
ACACACTGTTGCGGACATCTTTTGCTTGGATTGCCAGGCCTTACTGGGAT
GGAAGTACGAGGAGGCTTTTGAGGAGTCGCAGAAgtacaaggaggggaag
taCATTCTTGAGAAGACCTGTATTACCAAAGACCCTGATGGCGAGTGA
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Synonyms
Publications