EWM24716.1, cds5956 (CDS) Nannochloropsis gaditana

Overview
NameEWM24716.1
Unique Namecds5956
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:246447..246613 +
Alignment locationCM002467.1:246710..246797 +
Alignment locationCM002467.1:247077..247187 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24716.1
Productyippee-like protein
Orig transcript idgnl|cribi|Naga_100978g2.1500.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:246447..246613 +
CM002467.1supercontigCM002467.1:246710..246797 +
CM002467.1supercontigCM002467.1:247077..247187 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18
Homology
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|585106250|gb|EWM24716.1| (yippee-like protein [Nannochloropsis gaditana])

HSP 1 Score: 253.832 bits (647), Expect = 1.397e-85
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MLQLCLSFLASSASRYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPDGE 121
            MLQLCLSFLASSASRYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPDGE
Sbjct:    1 MLQLCLSFLASSASRYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPDGE 121          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|470530408|ref|XP_004368245.1| (Protein yippeelike 1, putative [Acanthamoeba castellanii str. Neff] >gi|440804613|gb|ELR25490.1| Protein yippeelike 1, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 147.517 bits (371), Expect = 1.335e-43
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0
Query:   16 YLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITK 116
            YL GP ++ C  C THL+ +  IISK F  R G+A+L+DKV+NVT+G  E R+LITGLHTVAD+FC DCQA +GWKYEEAFEESQKYKEGK+ILEK  I K
Sbjct:    8 YLSGPGVYKCHSCDTHLAKHGDIISKAFQSRSGKAYLFDKVVNVTSGPKEDRILITGLHTVADVFCSDCQAYVGWKYEEAFEESQKYKEGKFILEKAKIVK 108          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|302784428|ref|XP_002973986.1| (hypothetical protein SELMODRAFT_100523 [Selaginella moellendorffii] >gi|302803514|ref|XP_002983510.1| hypothetical protein SELMODRAFT_445590 [Selaginella moellendorffii] >gi|300148753|gb|EFJ15411.1| hypothetical protein SELMODRAFT_445590 [Selaginella moellendorffii] >gi|300158318|gb|EFJ24941.1| hypothetical protein SELMODRAFT_100523 [Selaginella moellendorffii])

HSP 1 Score: 139.813 bits (351), Expect = 1.630e-40
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0
Query:   17 LDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKD 117
            L GP+I+ CS C +H++ +D IISK F GR GRA+L+  V+N + GQ E R L+TGLHTVADIFC  CQ +LGWKYE A+EESQKYKEGK+ILEK  + K+
Sbjct:   16 LTGPRIYSCSNCRSHIADHDDIISKAFQGRNGRAYLFSHVVNTSVGQKEDRHLMTGLHTVADIFCQQCQEILGWKYERAYEESQKYKEGKFILEKAKVMKE 116          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|551664177|ref|XP_005834852.1| (hypothetical protein GUITHDRAFT_106421 [Guillardia theta CCMP2712] >gi|428178999|gb|EKX47872.1| hypothetical protein GUITHDRAFT_106421 [Guillardia theta CCMP2712])

HSP 1 Score: 139.428 bits (350), Expect = 2.393e-40
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 0
Query:   16 YLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPD 119
            YL G +I+ CS C THL+ +DQI+SK F GR GRAFL+  V+N+T G  E R+LITGLHTVAD++C  CQA+LGWKY EAFEESQKYKEGK I+EK  +  +P+
Sbjct:    8 YLCGDRIYSCSGCRTHLAKHDQIVSKAFQGRHGRAFLFSNVVNITLGPKEDRILITGLHTVADVYCNCCQAVLGWKYVEAFEESQKYKEGKCIIEKAKMAMEPN 111          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|302842771|ref|XP_002952928.1| (hypothetical protein VOLCADRAFT_82034 [Volvox carteri f. nagariensis] >gi|300261639|gb|EFJ45850.1| hypothetical protein VOLCADRAFT_82034 [Volvox carteri f. nagariensis])

HSP 1 Score: 138.272 bits (347), Expect = 4.380e-40
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 0
Query:   15 RYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPD 119
            +YL GP+I+ C+ C  H + +D IISK F GR GRA+L +  +NV+ G  E+R+LITGLHTVADI+C  C  +LGWKYE AFEESQKYKEGKYI+EK  + K+ +
Sbjct:    7 QYLSGPRIYSCATCRAHAADHDDIISKAFQGRHGRAYLINNAVNVSLGPREERVLITGLHTVADIYCTSCNTVLGWKYEHAFEESQKYKEGKYIIEKAKVMKEGN 111          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|1004135860|gb|KXZ43909.1| (hypothetical protein GPECTOR_78g97 [Gonium pectorale])

HSP 1 Score: 138.272 bits (347), Expect = 5.895e-40
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 0
Query:   15 RYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITK 116
            +YL+GP+I+ C+ C  H + +D IISK+F GR GRA+L +  +NV+ G  E+R+LITGLHTVADIFC  C ++LGWKYE AFEESQKYKEGK+I+EK  + K
Sbjct:    7 QYLNGPRIYSCATCRAHAADHDDIISKEFQGRHGRAYLINNAVNVSLGPREERVLITGLHTVADIFCTCCNSVLGWKYEHAFEESQKYKEGKFIIEKAKVMK 108          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|971506255|dbj|GAQ91951.1| (hypothetical protein KFL_008890030 [Klebsormidium nitens])

HSP 1 Score: 139.043 bits (349), Expect = 6.213e-40
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 0
Query:   15 RYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKD 117
            +YL+GP+I+ CS C  H + +D+IISKQF GR GRA+L++ V+NVT G  E R L TGLHTVADI+C  CQ +LGWKYE+A++ESQKYKEGKYI+EK  + K+
Sbjct:   40 QYLNGPRIYSCSNCRCHSADHDEIISKQFQGRYGRAYLFNSVVNVTLGPKEDRHLTTGLHTVADIYCSCCQQILGWKYEQAYDESQKYKEGKYIIEKARMMKE 142          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|1109241761|ref|XP_019195570.1| (PREDICTED: protein yippee-like At4g27745 [Ipomoea nil] >gi|1109241763|ref|XP_019195571.1| PREDICTED: protein yippee-like At4g27745 [Ipomoea nil])

HSP 1 Score: 137.887 bits (346), Expect = 7.807e-40
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 0
Query:   19 GPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKD 117
            GP+++CC +C  H+S +D IISK F GR GRAFL+  V+NV  G  E R L+TGLHTVAD+FC DC  LLGWKYE A+E++QKYKEGK+ILEK+ I K+
Sbjct:   13 GPRLYCCYKCKNHVSVHDDIISKAFQGRNGRAFLFSHVMNVIVGAKEDRHLMTGLHTVADVFCGDCHELLGWKYERAYEDTQKYKEGKFILEKSKIVKE 111          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|356535282|ref|XP_003536177.1| (PREDICTED: protein yippee-like At4g27745 [Glycine max] >gi|734358263|gb|KHN14756.1| Protein yippee-like [Glycine soja] >gi|947085545|gb|KRH34266.1| hypothetical protein GLYMA_10G173200 [Glycine max])

HSP 1 Score: 137.502 bits (345), Expect = 9.363e-40
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 0
Query:   19 GPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKD 117
            GP+++CCS C  H++ +D +ISK F G+ GRAFL+   +NVT G  E R L+TGLHTVAD++C DC  +LGWKYE A+EESQKYKEGKY+LEK  I ++
Sbjct:    6 GPRLYCCSNCRNHVALHDDVISKAFQGKSGRAFLFSHAMNVTVGPKEDRELMTGLHTVADVYCSDCHEVLGWKYERAYEESQKYKEGKYVLEKAKIARE 104          
BLAST of EWM24716.1 vs. NCBI_GenBank
Match: gi|470431588|ref|XP_004338414.1| (Yippee putative zincbinding protein [Acanthamoeba castellanii str. Neff] >gi|440795267|gb|ELR16401.1| Yippee putative zincbinding protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 137.117 bits (344), Expect = 1.573e-39
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 0
Query:   16 YLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPD 119
            YL G  ++ CS+C +HL+  D+I+SK F GR G+A+L+  V+NV+TG  E R+L+TGLHTVADI C DC +++GWKYEEA EESQ+YK GKYILEKT + K  D
Sbjct:    8 YLSGSVVYTCSRCNSHLARADEIVSKAFQGRHGQAYLFSSVVNVSTGPREDRILLTGLHTVADISCNDCHSVVGWKYEEAVEESQQYKVGKYILEKTKLAKKTD 111          
The following BLAST results are available for this feature:
BLAST of EWM24716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106250|gb|EWM24716.1|1.397e-85100.00yippee-like protein [Nannochloropsis gaditana][more]
gi|470530408|ref|XP_004368245.1|1.335e-4366.34Protein yippeelike 1, putative [Acanthamoeba caste... [more]
gi|302784428|ref|XP_002973986.1|1.630e-4061.39hypothetical protein SELMODRAFT_100523 [Selaginell... [more]
gi|551664177|ref|XP_005834852.1|2.393e-4062.50hypothetical protein GUITHDRAFT_106421 [Guillardia... [more]
gi|302842771|ref|XP_002952928.1|4.380e-4058.10hypothetical protein VOLCADRAFT_82034 [Volvox cart... [more]
gi|1004135860|gb|KXZ43909.1|5.895e-4059.80hypothetical protein GPECTOR_78g97 [Gonium pectora... [more]
gi|971506255|dbj|GAQ91951.1|6.213e-4061.17hypothetical protein KFL_008890030 [Klebsormidium ... [more]
gi|1109241761|ref|XP_019195570.1|7.807e-4061.62PREDICTED: protein yippee-like At4g27745 [Ipomoea ... [more]
gi|356535282|ref|XP_003536177.1|9.363e-4058.59PREDICTED: protein yippee-like At4g27745 [Glycine ... [more]
gi|470431588|ref|XP_004338414.1|1.573e-3958.65Yippee putative zincbinding protein [Acanthamoeba ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5971rna5971Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications