rna597, rna597 (mRNA) Nannochloropsis gaditana

Overview
Namerna597
Unique Namerna597
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1596
Alignment locationCM002455.1:1493957..1494804 +

Link to JBrowse

Properties
Property NameValue
Producttranscriptional activator myb
Orig transcript idgnl|cribi|Naga_100173g5.4678.mrna
Orig protein idgnl|cribi|Naga_100173g5.4678
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1493957..1494804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100173g5gene575Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna597rna597-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30072.1cds597Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna597 ID=rna597|Name=rna597|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp
TCTACGTCAATCATGACTCCTTTAATCTCAAATCCATACAAACTAAATAC
AGGAAACAATATGGCACCTCACACGACAAAGTCGGTAGAAAACGGTCAAG
TGGGCACGTCTTCTGATATTTCTGACAGTGGACTGCCAACACCTCTTTCC
CACGACTGCTGCTCCTCCCCTGTGCTGCACCCCACCCTGGCTGAGGAGGC
ATTGGCAGTTGGGCTAGAAATCAGGCCTCTACTCGGTCAATCTTTTGGTG
CCGAGGTGCTGAAGATGGATCTTGTCAACAAGCCCATGGCGCCTATCGTC
AATGTGGTGCGCAAAGCTCTTCTGGCCCACAAGGTCCTCGTTTTCCGTGA
CCAAGACGATCTTACACCAGAGAAGCACGTAGAATTTTCCCGTTATTTTG
GTACGTTGTATCAACATGCACTAGACGAAGCCCGCCTGCCAGGCGCGGAG
GATATTGTGGTGGTTTCTAATGAGGTTGATGAAGCAGGAAAGAAGAAGGG
CATAAATGGAATCGAGGAAAGTCAAAGTCGGAACGGCCGGAGGCATTACT
GGCACAGCGATTTGTCTTACATGGCCGCGCCCCCCATGGGCTCTATGCTG
CACATCAAAGTGCTGCCCGCTGACGGTAGCGGGGACACCCTTTTCGCTGA
CATGGTTCAAGCCTACGAAGGCCTTCCTTCGGAGAAGCAGAGCGAGCTCC
TATCCCTCCAGGCCCTCCATCTATTCCATAAGAACCTATCTAAGGAAGCG
TATAGCGCCATGGATGCTTCCGCTAGGGCAGTACTTGAAAATTTGCCGGC
GATGTCCCATCCCGTGGTGAGGACGCATCCAGAGACGGGTCGAAAGTCGC
TTTTTGTAAGCGAAGGGTTCACCACTGGCATTGAGGGCATGGAGGAGGCC
GAGGGCCAGGCCTTGTTGGATTGGCTTTTCGATTACACGAGTCAGGAAAA
ATTTGTGTACCGCCACAAATGGAAAAAAGGCGACATGGTCTTTTGGGATA
ACCGGATGCTTTTACATTTCGCCACGGGCTCCGAGCTGCCTCGCACTTTG
TACCGGACGACCATTAAAGGAGACGTAGTCTTCTGATTTCCGGTCTGCTG
ACATTAAAGAAATGATTGAAGGCGTAGGACCGAAAAATGCCACATTTCTG
TAGAAATTTCTGTAGAAATGGATATATTAGATTGTCACTAGAACATTTAA
TAGTGATTGGACATGTTTAGGGAATGGACATTACGAAATGCCCGGTCGTA
CAGTCCGTGCATGTGCCAATAGTTTGGAGTTTGAGAGTATGACATTGCTG
TACCTCCATAACGTCGCGAAACGAGATTGATGTAGTTATGTACTGGGATG
TGGAGGACCTTTGTGAGCTATATAAATGTGGGATAAATAGCTCTGACTAT
CTCAAAAGCAATGCGAAATATCTGTTCGTTTGGTAGACTGTAAGAGATCG
GCTTCGCCATCAACACAGCTCTAGAAGTAATTTCACGGCTTCATTGATGC
GTATAAGCAGTGAAATTTGAATGGCAAATTGGTCAGTTGACAGTCTTCGT
GCAAGGTTGAAGTCGTGTTCAGTGAAGAATGATTTGATCTTTTTCT
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protein sequence of rna597

>rna597-protein ID=rna597-protein|Name=rna597|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWH
YVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRY
NFLSKRQLEEAQRHFRPFLGPPLSLHIQPA
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mRNA from alignment at CM002455.1:1493957..1494804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna597 ID=rna597|Name=rna597|organism=Nannochloropsis gaditana|type=mRNA|length=848bp|location=Sequence derived from alignment at CM002455.1:1493957..1494804+ (Nannochloropsis gaditana)
ATGCATGACCCAAACAAGCGGCACACCtggacgggagaggaggaccggCG
GCTGAAGGAGCTGGTCCGAACGGTGGGCCCTCGGAAATGGGGCATTATAT
CAACCCATTTCAAGAACCGCAATGCAAAGCAATGTCATCAACGCTGGCAC
TACGTGCTCAAGCCATCCATCACCCGTGAACCctggacggaggaggaaga
taaTGCGATTATGCAATATCAGATCCAGATTGGGAACAAGTGGTCACAAA
TTGCCAAATTTCTTCACGGTCGAACAGGATATGCCATTCGAAATCGGTAT
AACTTTCTGTCTAAACGACAATTAGAGGAAGCCCAGCGACATTTTCGACC
GTTTTTAGGACCGCCCTTGTCCTTACACATGTacgcagctgctgctgcag
cgtCTGCAGAGGGACGAAGTTCAAGGACCATCGAGCAGGAGATGGATGTG
GGAACACAGCACAATGCGGGCCATATTTCGCAGAACGGAGATATTATGAA
TCTAAGTAGGAAAGTAGACGAGGAAAATGCGGAcagcgaggatggggagg
aggagaaggaaattcAACCGAGGCGACCCGAGGTAAATAGCGAGGAAGTA
AACGCGGGAACAGAAAGGCAGTGTCATCTGAGGACATCACCAAGTGATGG
AGAccatggagagagggacggcgCAGAATGTCCTGCGGAAAATCAAGAGG
AAAGCGACCGACCGGACACATCCGCGAACATGCTATTGGAACCTTTACCG
GTGCCGCGGTCTTGGGCCCGTAGCTCTGCTGTCGCAGCGCCACAAGATCC
TTACGTCGACAgtgtctctcctccttccatggCAGACAGCCAGCCTAA
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Coding sequence (CDS) from alignment at CM002455.1:1493957..1494804+

>rna597 ID=rna597|Name=rna597|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at CM002455.1:1493957..1494804+ (Nannochloropsis gaditana)
ATGCATGACCCAAACAAGCGGCACACCtggacgggagaggaggaccggCG
GCTGAAGGAGCTGGTCCGAACGGTGGGCCCTCGGAAATGGGGCATTATAT
CAACCCATTTCAAGAACCGCAATGCAAAGCAATGTCATCAACGCTGGCAC
TACGTGCTCAAGCCATCCATCACCCGTGAACCctggacggaggaggaaga
taaTGCGATTATGCAATATCAGATCCAGATTGGGAACAAGTGGTCACAAA
TTGCCAAATTTCTTCACGGTCGAACAGGATATGCCATTCGAAATCGGTAT
AACTTTCTGTCTAAACGACAATTAGAGGAAGCCCAGCGACATTTTCGACC
GTTTTTAGGACCGCCCTTGTCCTTACACATACAGCCAGCCTAAATGCATG
ACCCAAACAAGCGGCACACCtggacgggagaggaggaccggCGGCTGAAG
GAGCTGGTCCGAACGGTGGGCCCTCGGAAATGGGGCATTATATCAACCCA
TTTCAAGAACCGCAATGCAAAGCAATGTCATCAACGCTGGCACTACGTGC
TCAAGCCATCCATCACCCGTGAACCctggacggaggaggaagataaTGCG
ATTATGCAATATCAGATCCAGATTGGGAACAAGTGGTCACAAATTGCCAA
ATTTCTTCACGGTCGAACAGGATATGCCATTCGAAATCGGTATAACTTTC
TGTCTAAACGACAATTAGAGGAAGCCCAGCGACATTTTCGACCGTTTTTA
GGACCGCCCTTGTCCTTACACATACAGCCAGCCTAA
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Synonyms
Publications