EWM30072.1, cds597 (CDS) Nannochloropsis gaditana

Overview
NameEWM30072.1
Unique Namecds597
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1493957..1494336 +
Alignment locationCM002455.1:1494792..1494804 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30072.1
Producttranscriptional activator myb
Orig transcript idgnl|cribi|Naga_100173g5.4678.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1493957..1494336 +
CM002455.1supercontigCM002455.1:1494792..1494804 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|585112705|gb|EWM30072.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 273.478 bits (698), Expect = 3.848e-93
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA 130
            MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA
Sbjct:    1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA 130          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|585106258|gb|EWM24723.1| (myb family transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 150.984 bits (380), Expect = 9.443e-40
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 0
Query:    1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSK 105
            M D  KR+TWT +ED+ L  LV   GP+KWGI++T+   RNAKQCHQRWHYVLKPSI+RE WTE+ED  I  YQ  +GNKWS IAK+L GRTGYA+RNR+ FL K
Sbjct: 1275 MEDDGKRNTWTADEDKILASLVEKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 1379          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410126|ref|XP_013066118.1| (PREDICTED: transcriptional activator Myb-like isoform X4 [Biomphalaria glabrata])

HSP 1 Score: 117.857 bits (294), Expect = 3.637e-28
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
            WT EED R+ +LV   GP++W +IS H K R  KQC +RWH  L PSI +  WTEEED  I Q   ++GN+W++IAK+L GRT  AI+N +N   KR+ E  +   R ++   LSL+ +P
Sbjct:  122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410120|ref|XP_013066115.1| (PREDICTED: transcriptional activator Myb-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 117.472 bits (293), Expect = 4.583e-28
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
            WT EED R+ +LV   GP++W +IS H K R  KQC +RWH  L PSI +  WTEEED  I Q   ++GN+W++IAK+L GRT  AI+N +N   KR+ E  +   R ++   LSL+ +P
Sbjct:  122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410124|ref|XP_013066117.1| (PREDICTED: transcriptional activator Myb-like isoform X3 [Biomphalaria glabrata])

HSP 1 Score: 117.472 bits (293), Expect = 4.696e-28
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
            WT EED R+ +LV   GP++W +IS H K R  KQC +RWH  L PSI +  WTEEED  I Q   ++GN+W++IAK+L GRT  AI+N +N   KR+ E  +   R ++   LSL+ +P
Sbjct:  122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410122|ref|XP_013066116.1| (PREDICTED: transcriptional activator Myb-like isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 117.472 bits (293), Expect = 4.856e-28
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
            WT EED R+ +LV   GP++W +IS H K R  KQC +RWH  L PSI +  WTEEED  I Q   ++GN+W++IAK+L GRT  AI+N +N   KR+ E  +   R ++   LSL+ +P
Sbjct:  122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410128|ref|XP_013066119.1| (PREDICTED: myb-related protein B-like isoform X5 [Biomphalaria glabrata])

HSP 1 Score: 117.087 bits (292), Expect = 5.123e-28
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
            WT EED R+ +LV   GP++W +IS H K R  KQC +RWH  L PSI +  WTEEED  I Q   ++GN+W++IAK+L GRT  AI+N +N   KR+ E  +   R ++   LSL+ +P
Sbjct:   73 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 192          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|553179728|ref|XP_005852752.1| (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295780|gb|EKU23079.1| myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.153 bits (274), Expect = 5.456e-27
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 0
Query:    5 NKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKR 106
            +K+  W  EED  L+ LV   G R WG I+ HF+NRN KQCHQRW+Y L P++    WT EED  I+ +Q  +GNKW++IA  + GRTG+A++NR + ++ +
Sbjct:  168 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANK 269          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|1072231989|gb|OEU16721.1| (ternary protein-Dna Complex1, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.071 bits (266), Expect = 8.048e-27
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLE 109
            WT EEDR++ ELV+  G +KW +I+T+   R  KQC +RWH  L P I++E W E+ED  I++  I +GN+W++IAK L GRT  AI+N +N   +R++E
Sbjct:   79 WTAEEDRKVVELVKKHGAKKWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWAEIAKMLPGRTDNAIKNHWNSSMRRKIE 178          
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|120974744|gb|ABM46727.1| (MYB, partial [Gorilla gorilla])

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-26
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 0
Query:   10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEE 110
            WT EED+R+ ELV+  GP++W +I+ H K R  KQC +RWH  L P + +  WTEEED  I Q   ++GN+W++IAK L GRT  AI+N +N   +R++E+
Sbjct:   48 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 148          

HSP 2 Score: 72.4034 bits (176), Expect = 4.553e-13
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0
Query:   15 DRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNK-WSQIAKFLHGRTGYAIRNRY 100
            D +LK+LV   G   W +I+ +  NR   QC  RW  VL P + + PWT+EED  +++   + G K WS IAK L GR G   R R+
Sbjct:    1 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERW 87          
The following BLAST results are available for this feature:
BLAST of EWM30072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112705|gb|EWM30072.1|3.848e-93100.00transcriptional activator myb [Nannochloropsis gad... [more]
gi|585106258|gb|EWM24723.1|9.443e-4064.76myb family transcription factor [Nannochloropsis g... [more]
gi|908410126|ref|XP_013066118.1|3.637e-2846.67PREDICTED: transcriptional activator Myb-like isof... [more]
gi|908410120|ref|XP_013066115.1|4.583e-2846.67PREDICTED: transcriptional activator Myb-like isof... [more]
gi|908410124|ref|XP_013066117.1|4.696e-2846.67PREDICTED: transcriptional activator Myb-like isof... [more]
gi|908410122|ref|XP_013066116.1|4.856e-2846.67PREDICTED: transcriptional activator Myb-like isof... [more]
gi|908410128|ref|XP_013066119.1|5.123e-2846.67PREDICTED: myb-related protein B-like isoform X5 [... [more]
gi|553179728|ref|XP_005852752.1|5.456e-2747.06myb-like dna-binding domain containing protein, pa... [more]
gi|1072231989|gb|OEU16721.1|8.048e-2747.00ternary protein-Dna Complex1, partial [Fragilariop... [more]
gi|120974744|gb|ABM46727.1|1.139e-2647.52MYB, partial [Gorilla gorilla][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna597rna597Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications