EWM30072.1, cds597 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|585112705|gb|EWM30072.1| (transcriptional activator myb [Nannochloropsis gaditana]) HSP 1 Score: 273.478 bits (698), Expect = 3.848e-93 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA 130
MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA
Sbjct: 1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA 130
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|585106258|gb|EWM24723.1| (myb family transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 150.984 bits (380), Expect = 9.443e-40 Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 0
Query: 1 MHDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSK 105
M D KR+TWT +ED+ L LV GP+KWGI++T+ RNAKQCHQRWHYVLKPSI+RE WTE+ED I YQ +GNKWS IAK+L GRTGYA+RNR+ FL K
Sbjct: 1275 MEDDGKRNTWTADEDKILASLVEKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 1379
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410126|ref|XP_013066118.1| (PREDICTED: transcriptional activator Myb-like isoform X4 [Biomphalaria glabrata]) HSP 1 Score: 117.857 bits (294), Expect = 3.637e-28 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
WT EED R+ +LV GP++W +IS H K R KQC +RWH L PSI + WTEEED I Q ++GN+W++IAK+L GRT AI+N +N KR+ E + R ++ LSL+ +P
Sbjct: 122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410120|ref|XP_013066115.1| (PREDICTED: transcriptional activator Myb-like isoform X1 [Biomphalaria glabrata]) HSP 1 Score: 117.472 bits (293), Expect = 4.583e-28 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
WT EED R+ +LV GP++W +IS H K R KQC +RWH L PSI + WTEEED I Q ++GN+W++IAK+L GRT AI+N +N KR+ E + R ++ LSL+ +P
Sbjct: 122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410124|ref|XP_013066117.1| (PREDICTED: transcriptional activator Myb-like isoform X3 [Biomphalaria glabrata]) HSP 1 Score: 117.472 bits (293), Expect = 4.696e-28 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
WT EED R+ +LV GP++W +IS H K R KQC +RWH L PSI + WTEEED I Q ++GN+W++IAK+L GRT AI+N +N KR+ E + R ++ LSL+ +P
Sbjct: 122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410122|ref|XP_013066116.1| (PREDICTED: transcriptional activator Myb-like isoform X2 [Biomphalaria glabrata]) HSP 1 Score: 117.472 bits (293), Expect = 4.856e-28 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
WT EED R+ +LV GP++W +IS H K R KQC +RWH L PSI + WTEEED I Q ++GN+W++IAK+L GRT AI+N +N KR+ E + R ++ LSL+ +P
Sbjct: 122 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 241
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|908410128|ref|XP_013066119.1| (PREDICTED: myb-related protein B-like isoform X5 [Biomphalaria glabrata]) HSP 1 Score: 117.087 bits (292), Expect = 5.123e-28 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQP 129
WT EED R+ +LV GP++W +IS H K R KQC +RWH L PSI + WTEEED I Q ++GN+W++IAK+L GRT AI+N +N KR+ E + R ++ LSL+ +P
Sbjct: 73 WTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLYSRP 192
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|553179728|ref|XP_005852752.1| (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295780|gb|EKU23079.1| myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 110.153 bits (274), Expect = 5.456e-27 Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 5 NKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKR 106
+K+ W EED L+ LV G R WG I+ HF+NRN KQCHQRW+Y L P++ WT EED I+ +Q +GNKW++IA + GRTG+A++NR + ++ +
Sbjct: 168 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANK 269
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|1072231989|gb|OEU16721.1| (ternary protein-Dna Complex1, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 107.071 bits (266), Expect = 8.048e-27 Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLE 109
WT EEDR++ ELV+ G +KW +I+T+ R KQC +RWH L P I++E W E+ED I++ I +GN+W++IAK L GRT AI+N +N +R++E
Sbjct: 79 WTAEEDRKVVELVKKHGAKKWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWAEIAKMLPGRTDNAIKNHWNSSMRRKIE 178
BLAST of EWM30072.1 vs. NCBI_GenBank
Match: gi|120974744|gb|ABM46727.1| (MYB, partial [Gorilla gorilla]) HSP 1 Score: 107.457 bits (267), Expect = 1.139e-26 Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 0
Query: 10 WTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEE 110
WT EED+R+ ELV+ GP++W +I+ H K R KQC +RWH L P + + WTEEED I Q ++GN+W++IAK L GRT AI+N +N +R++E+
Sbjct: 48 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 148 HSP 2 Score: 72.4034 bits (176), Expect = 4.553e-13 Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0
Query: 15 DRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNK-WSQIAKFLHGRTGYAIRNRY 100
D +LK+LV G W +I+ + NR QC RW VL P + + PWT+EED +++ + G K WS IAK L GR G R R+
Sbjct: 1 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERW 87 The following BLAST results are available for this feature:
BLAST of EWM30072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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