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Properties
| Property Name | Value |
|---|
| Product | splicing factor 4 |
| Orig transcript id | gnl|cribi|Naga_100180g6.4039.mrna |
| Orig protein id | gnl|cribi|Naga_100180g6.4039 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:224491..226388 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5965 ID=rna5965|Name=rna5965|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp
ACTTGTAACAGTGTCGCTTGAAATCTAAGAGAAGTATGCGCGAGATCCTT
CACATTCAAGCCGGGCAGTGCGGCAATCAAATCGGCTGCAAGTTTTGGGA
GGTCATCTCAGCGGAGCACGGCATCCAACCCGATGGTTCCTATAAAGGAG
AATCCGCCACTCAGCTTGAACGCATCGACGTGTACTACCGCGAAGCCAAC
AGTGGACGCTATGTGCCGCGTGCGTTGTTGATTGATCTGGAGCCTGGGAC
TATGGACTCAGCGAGGTCTAGCGCTTACGGGGGCCTCTTCAGGCCAGACA
ACTTTATCTATGGCCAGTCCGGGGCCGGTAACAACTGGGCTAAAGGGCAT
TACACGGAAGGCGCTGAGCTCCTGGACACGGTGTTAGACGCCTTGCGGAA
AGAGGTAGAAAGCTGCGACTGCCTGCAAGGGTTTCAAATGACGCACTCGC
TGGGGGGTGGGACCGGGTCGGGCCTGGGCACCCTCCTCATGTCCAAAGTG
AAGGAGGAATTCCCCGACCGGATCTTAAGCTCGTACGCTGTCATTCCTTC
AGCCAAGGTCTCTGACACGGTGGTGGAGCCTTACAACGCCATGCTTTCCG
TGCACCAGCTCGTCGAAAACGCTGACCAATGCTTCATTCTTGACAACGAG
GCACTTTACAACATTTGCTTGCGCACGCTCAAATTGGTCAACCCCACCTA
CGGTGATCTCAACCACCTCGTCTCCGCCGCCATGTGTGGGACCACTTGCT
CCCTTCGCTTCCCCGGTCAATTGAATTGCGATTTGCGGAAGCTCTCTGTG
AACATGGTGCCTTTCCCCCGGCTGCACTTCTTCAGCGTTGGCTTTGCACC
CCTGACATGCTCTGCTTCCCAAGACTACCGCACCCTGACCGTCGCAGAGC
TCACACAGCAAGCCTTCGACGCGAAGAACATGATGTGCGCCTCGGATCCC
CGCCACGGCCGGTATTTGACCTGCGCGTGCATGTTCCGAGGCCAGATCTC
CGCGCACGACATGGACGTGCAGATGTCTCAAACCGTCTCCAAGAACAGCG
CTGCCTTTGTCGAATGGATTCCCAACAACATCAAAGCCTCCATTTGCAAT
GTGCCCCCCGTGGGGATGAAGATGTCCGCCACCTTTGTCGGGAACAACAC
GGCCATTCAAAGCGTCTGGAAACGCATTGCCGACCAGTTTGGGCTCATGT
TCTCTCGGAAGGCATTCTTGCACTGGTACACGGGCGAAGGGATGGAGGAA
TTGGAGTTTACAGAGGCAGACTCCAACCTGCAGGACCTCATTGCCGAATA
TCAGCAATACCAGGACGCGATGGTAGACGAGGAGGAGATAGAGGCGGACA
TTTACGGTCATGGCTACACGCTACAAGAGGCGACATAGATGCGTGCAGTG
CAAAATGATATATCATGCCTCTCCGTTTCCTCTTCATTGTTCGTCTCCCA
TGTCCTGCTTCCGTTTTGTTCTTAAGCTTGATGTTTGTGTCGGGCTGTAT
TTCTTTCATCTTGGTCATATCCAGCTTCGAAATACACACTTTGTATATTA
ATTTACATGCGGCAGCAAACGAGAAGATGTGTACAAGAAAGAAATGATAT
CCTTTAAGAAAACAAGTGCGAGAACCCCCAAAACCACGATATAGAACCAA
TGACGCAGAAAACTCTGCATGCAAATAAAGAGTACTGGCCTCCGTTGTCG
TCGAAAGTCGAGGGAGAACCGGTAAAAAAAGAAAAAGTTATGAAAAGAAG
AAACAAGAAAAAGGAGAAGAAAAGAGGATCAAATTAATTACATATTTTTC
AGGTAAAGAAGATCGATTCCACAGTGCATGTGTGCTCTAACCTGCCCATG
GTATGTGTTTGGCAAAGACATACCACGCATCCTACGCGTTCGGTCATTCA
GGGGATGAAGTGGAGGTTACTAGAAAGCACAAAGGTAACAAGTACTGAGA
TAAAGGGGTCACAATGCTTGATACAATGGCTTGGAACGGATGAATTTTTC
AGAATGTATATTTCTTTTGAAGGAAAAGACAAAAATCTGGGTATGTGAAA
GCTTTT back to topprotein sequence of rna5965 >rna5965-protein ID=rna5965-protein|Name=rna5965|organism=Nannochloropsis gaditana|type=polypeptide|length=528bp
MYPSQQYYPPSSAPPPSPPQQPQQQEEYDPLAATSSQANEGGPPGAYDPL
GAPPPPPPPPPSNTPAPTNIYADAQGSFIERFAQMKEEKEREDKSLQEAE
RQVKALKEAHARRVAAENQSQRKRKGGRSGGVMMKRRGGAGTVASVFSME
DDEDEEGDEEGKKGQLEAGEEGGPQPPKRSRWASEGEKDVEHGEERMTEE
MEAKIRALAAWKVKNPERGSQLEEERRGQPGTAAVAKKPKRNRWGPESGV
PPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQK
RIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQ
SEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASK
GRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQL
LKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGD
DFENYRRRMMLAYRFRPNPLNNPRRAYY back to topmRNA from alignment at CM002467.1:224491..226388- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5965 ID=rna5965|Name=rna5965|organism=Nannochloropsis gaditana|type=mRNA|length=1898bp|location=Sequence derived from alignment at CM002467.1:224491..226388- (Nannochloropsis gaditana)
ATGTATCCCTCCCAACAATACTACCCTCCATCTTCCGCACCACCTCCGTC
CCCCCCCCAGCAACCGCAACAGCAGGAGGAATACGACCCGCTTGCGGCCA
CCTCATCTCAGGCAAATGAGGGCGGGCCGCCCGGCGCTTACGATCCCCTC
GGTGCCCCCCCCCCGCCCCCTCCCCCCCCCCCGTCGAACACACCGGCACC
GACGAACATTTATGCGGACGCCCAAGGCTCCTTCATCGAGCGCTTCGCAC
AGATGAAGGAAGAAAAGGAAAGGGAGGACAAGAGCCTCCAAGAGGCGGAA
AGGCAGGTGAAGGCTTTGAAGGAGGCGCATGCCCGAAGGGTGGCGGCAGA
GAACCAATCTCAACGGAAACGGAAAGGGGGGAGAAGTGGAGGGGTGATGA
TGAAGAGGAGAGGAGGGGCGGGGACGGTGGCATCGGTCTTCTCGATGGAG
GACGATGAGGACGAGGAGGGAGACGAGGAAGGGAAGAAGGGGCAGCTGGA
GGCGGGGGAGGAAGGGGGGCCGCAGCCGCCAAAGAGGTCACGTTGGGCGA
GCGAGGGTGAGAAAGATGTGGAGCATGGCGAGGAAAGGATGACGGAGGAG
ATGGAAGCCAAAATACGCGCCTTGGCAGCATGGAAAGTGAAAAATCCGGA
GCGGGGATCCCAGTTGGAGGAGGAGCGGCGAGGACAGCCCGGGTGGGAAT
TTTTGGGGGCGAGAGAGGACAGGAAGGAGGGAGGGAAGGAGGGAGGGAAA
AAATGGGAGTTGGCCCGGCGCTTTTATGAGGAGGTGTTGGAAGAGGTACG
GGTGAAGGAACAGGTCCGTCTGGTGGCCTCGGGGGAGGACGAGGGCGGGG
GGCGGGGGGGGGATCCGAGGCAGCGACGGTCCTCGAGCTCTCCAGGCTGA
GCCTTCCCCCCTCTGCCCTCCATCGTGCCGCGTCGAGCGTGGTGGGACCA
CTTTCCTCCCATCTGCCCCCTCCGGCTCTGGATTCCCTGGCGTCCGACGC
CAGCACGGCAGCCGTAGCCAAGAAGCCCAAACGTAATCGGTGGGGCCCTG
AATCAGGGGTACCGCCCTCCGCCCCACCCTCCGCCCCGCCCTCCCTCCCG
CCCTCCCTCCCGCCTTCCACGAGGAAAAAAGACGGGAAAAAGAACGCCTT
GGACGAGTACCTCCCCACGGTCATGGACGCGGCGGCCATGACCCAATTGC
AGGAGCAGAAAAGGATTCAAGCGCTGGAGAAGAAGATCCGGGAGGCGGCC
CGTCTGAAGGCCTTGGCGGAGGGCGGGAAGGAGGGCGGGAAGGAGGTGGA
GCTCTTCCAGGAGCGGGCCTTGTACTACGAGGAGTTGGCGGAAAAAGAAG
GGAAGGGACAGAGCGAAGGGGAGGCGATCCGTGCCATTGAAGCCGAGAAT
CGCCGGGCAGCGGGCGGGGTGGAAGACGGTGGGACCTGGGAACACCGAAA
ACGCGCGAAGGAGATGCTCCAGACGGCCGAGGACGCCTTGCACGTGACGC
TGGCCTCCAAGGGGCGACATCACGTGGCGCAATACCTCCCTGCCGGGGAG
ATGGAACGGCTCTTGCAGTCGGCGGGGAAAGGCGGGGCAGGGAAGGGAGG
GGACGAAGGAGACTTTGCGGCCAACCGGCTGGAGGCGGAGACCAATGTGG
GCATGCAGCTGTTGAAGAAGCAGGGATGGAACGAAGGTCAGGGGCTGGGA
GCTGAGGGGAAGACAGGTGTGAAGGCGCCAGTGAACATGCAGACGACAGG
AGGGGAGGGAGTCGGCGTGGGGGGCGGTGGTGAAGAGGAGGCCGGGGAGG
AAGGAGGCGACGATTTCGAGAATTACAGACGGCGGATGATGCTTGCCTAC
CGTTTCCGACCGAACCCTTTGAACAATCCACGACGGGCATACTATTAA back to topCoding sequence (CDS) from alignment at CM002467.1:224491..226388- >rna5965 ID=rna5965|Name=rna5965|organism=Nannochloropsis gaditana|type=CDS|length=3174bp|location=Sequence derived from alignment at CM002467.1:224491..226388- (Nannochloropsis gaditana)
CACGGCAGCCGTAGCCAAGAAGCCCAAACGTAATCGGTGGGGCCCTGAAT
CAGGGGTACCGCCCTCCGCCCCACCCTCCGCCCCGCCCTCCCTCCCGCCC
TCCCTCCCGCCTTCCACGAGGAAAAAAGACGGGAAAAAGAACGCCTTGGA
CGAGTACCTCCCCACGGTCATGGACGCGGCGGCCATGACCCAATTGCAGG
AGCAGAAAAGGATTCAAGCGCTGGAGAAGAAGATCCGGGAGGCGGCCCGT
CTGAAGGCCTTGGCGGAGGGCGGGAAGGAGGGCGGGAAGGAGGTGGAGCT
CTTCCAGGAGCGGGCCTTGTACTACGAGGAGTTGGCGGAAAAAGAAGGGA
AGGGACAGAGCGAAGGGGAGGCGATCCGTGCCATTGAAGCCGAGAATCGC
CGGGCAGCGGGCGGGGTGGAAGACGGTGGGACCTGGGAACACCGAAAACG
CGCGAAGGAGATGCTCCAGACGGCCGAGGACGCCTTGCACGTGACGCTGG
CCTCCAAGGGGCGACATCACGTGGCGCAATACCTCCCTGCCGGGGAGATG
GAACGGCTCTTGCAGTCGGCGGGGAAAGGCGGGGCAGGGAAGGGAGGGGA
CGAAGGAGACTTTGCGGCCAACCGGCTGGAGGCGGAGACCAATGTGGGCA
TGCAGCTGTTGAAGAAGCAGGGATGGAACGAAGGTCAGGGGCTGGGAGCT
GAGGGGAAGACAGGTGTGAAGGCGCCAGTGAACATGCAGACGACAGGAGG
GGAGGGAGTCGGCGTGGGGGGCGGTGGTGAAGAGGAGGCCGGGGAGGAAG
GAGGCGACGATTTCGAGAATTACAGACGGCGGATGATGCTTGCCTACCGT
TTCCGACCGAACCCTTTGAACAATCCACGACGGGCATACTATTAAATGTA
TCCCTCCCAACAATACTACCCTCCATCTTCCGCACCACCTCCGTCCCCCC
CCCAGCAACCGCAACAGCAGGAGGAATACGACCCGCTTGCGGCCACCTCA
TCTCAGGCAAATGAGGGCGGGCCGCCCGGCGCTTACGATCCCCTCGGTGC
CCCCCCCCCGCCCCCTCCCCCCCCCCCGTCGAACACACCGGCACCGACGA
ACATTTATGCGGACGCCCAAGGCTCCTTCATCGAGCGCTTCGCACAGATG
AAGGAAGAAAAGGAAAGGGAGGACAAGAGCCTCCAAGAGGCGGAAAGGCA
GGTGAAGGCTTTGAAGGAGGCGCATGCCCGAAGGGTGGCGGCAGAGAACC
AATCTCAACGGAAACGGAAAGGGGGGAGAAGTGGAGGGGTGATGATGAAG
AGGAGAGGAGGGGCGGGGACGGTGGCATCGGTCTTCTCGATGGAGGACGA
TGAGGACGAGGAGGGAGACGAGGAAGGGAAGAAGGGGCAGCTGGAGGCGG
GGGAGGAAGGGGGGCCGCAGCCGCCAAAGAGGTCACGTTGGGCGAGCGAG
GGTGAGAAAGATGTGGAGCATGGCGAGGAAAGGATGACGGAGGAGATGGA
AGCCAAAATACGCGCCTTGGCAGCATGGAAAGTGAAAAATCCGGAGCGGG
GATCCCAGTTGGAGGAGGAGCGGCGAGGACAGCCCGGCACGGCAGCCGTA
GCCAAGAAGCCCAAACGTAATCGGTGGGGCCCTGAATCAGGGGTACCGCC
CTCCGCCCCACCCTCCGCCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCTT
CCACGAGGAAAAAAGACGGGAAAAAGAACGCCTTGGACGAGTACCTCCCC
ACGGTCATGGACGCGGCGGCCATGACCCAATTGCAGGAGCAGAAAAGGAT
TCAAGCGCTGGAGAAGAAGATCCGGGAGGCGGCCCGTCTGAAGGCCTTGG
CGGAGGGCGGGAAGGAGGGCGGGAAGGAGGTGGAGCTCTTCCAGGAGCGG
GCCTTGTACTACGAGGAGTTGGCGGAAAAAGAAGGGAAGGGACAGAGCGA
AGGGGAGGCGATCCGTGCCATTGAAGCCGAGAATCGCCGGGCAGCGGGCG
GGGTGGAAGACGGTGGGACCTGGGAACACCGAAAACGCGCGAAGGAGATG
CTCCAGACGGCCGAGGACGCCTTGCACGTGACGCTGGCCTCCAAGGGGCG
ACATCACGTGGCGCAATACCTCCCTGCCGGGGAGATGGAACGGCTCTTGC
AGTCGGCGGGGAAAGGCGGGGCAGGGAAGGGAGGGGACGAAGGAGACTTT
GCGGCCAACCGGCTGGAGGCGGAGACCAATGTGGGCATGCAGCTGTTGAA
GAAGCAGGGATGGAACGAAGGTCAGGGGCTGGGAGCTGAGGGGAAGACAG
GTGTGAAGGCGCCAGTGAACATGCAGACGACAGGAGGGGAGGGAGTCGGC
GTGGGGGGCGGTGGTGAAGAGGAGGCCGGGGAGGAAGGAGGCGACGATTT
CGAGAATTACAGACGGCGGATGATGCTTGCCTACCGTTTCCGACCGAACC
CTTTGAACAATCCACGACGGGCATACTATTAAATGTATCCCTCCCAACAA
TACTACCCTCCATCTTCCGCACCACCTCCGTCCCCCCCCCAGCAACCGCA
ACAGCAGGAGGAATACGACCCGCTTGCGGCCACCTCATCTCAGGCAAATG
AGGGCGGGCCGCCCGGCGCTTACGATCCCCTCGGTGCCCCCCCCCCGCCC
CCTCCCCCCCCCCCGTCGAACACACCGGCACCGACGAACATTTATGCGGA
CGCCCAAGGCTCCTTCATCGAGCGCTTCGCACAGATGAAGGAAGAAAAGG
AAAGGGAGGACAAGAGCCTCCAAGAGGCGGAAAGGCAGGTGAAGGCTTTG
AAGGAGGCGCATGCCCGAAGGGTGGCGGCAGAGAACCAATCTCAACGGAA
ACGGAAAGGGGGGAGAAGTGGAGGGGTGATGATGAAGAGGAGAGGAGGGG
CGGGGACGGTGGCATCGGTCTTCTCGATGGAGGACGATGAGGACGAGGAG
GGAGACGAGGAAGGGAAGAAGGGGCAGCTGGAGGCGGGGGAGGAAGGGGG
GCCGCAGCCGCCAAAGAGGTCACGTTGGGCGAGCGAGGGTGAGAAAGATG
TGGAGCATGGCGAGGAAAGGATGACGGAGGAGATGGAAGCCAAAATACGC
GCCTTGGCAGCATGGAAAGTGAAAAATCCGGAGCGGGGATCCCAGTTGGA
GGAGGAGCGGCGAGGACAGCCCGG back to top
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