EWM24726.1, cds5950 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|585106261|gb|EWM24726.1| (splicing factor 4 [Nannochloropsis gaditana]) HSP 1 Score: 1048.11 bits (2709), Expect = 0.000e+0 Identity = 528/528 (100.00%), Postives = 528/528 (100.00%), Query Frame = 0 Query: 1 MYPSQQYYPPSSAPPPSPPQQPQQQEEYDPLAATSSQANEGGPPGAYDPLGAPPPPPPPPPSNTPAPTNIYADAQGSFIERFAQMKEEKEREDKSLQEAERQVKALKEAHARRVAAENQSQRKRKGGRSGGVMMKRRGGAGTVASVFSMEDDEDEEGDEEGKKGQLEAGEEGGPQPPKRSRWASEGEKDVEHGEERMTEEMEAKIRALAAWKVKNPERGSQLEEERRGQPGTAAVAKKPKRNRWGPESGVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 MYPSQQYYPPSSAPPPSPPQQPQQQEEYDPLAATSSQANEGGPPGAYDPLGAPPPPPPPPPSNTPAPTNIYADAQGSFIERFAQMKEEKEREDKSLQEAERQVKALKEAHARRVAAENQSQRKRKGGRSGGVMMKRRGGAGTVASVFSMEDDEDEEGDEEGKKGQLEAGEEGGPQPPKRSRWASEGEKDVEHGEERMTEEMEAKIRALAAWKVKNPERGSQLEEERRGQPGTAAVAKKPKRNRWGPESGVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY Sbjct: 1 MYPSQQYYPPSSAPPPSPPQQPQQQEEYDPLAATSSQANEGGPPGAYDPLGAPPPPPPPPPSNTPAPTNIYADAQGSFIERFAQMKEEKEREDKSLQEAERQVKALKEAHARRVAAENQSQRKRKGGRSGGVMMKRRGGAGTVASVFSMEDDEDEEGDEEGKKGQLEAGEEGGPQPPKRSRWASEGEKDVEHGEERMTEEMEAKIRALAAWKVKNPERGSQLEEERRGQPGTAAVAKKPKRNRWGPESGVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|298713305|emb|CBJ27001.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 182.185 bits (461), Expect = 1.626e-45 Identity = 125/272 (45.96%), Postives = 160/272 (58.82%), Query Frame = 0 Query: 272 KKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEG--------------GKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLL-QSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 ++D K L LP MDA QL++QK +Q LE ++REAA +A+ G+ + EL++ER Y +LA + K + E + + E+ A GGV DGGTWEHRKRAKEML+TAE AL+VTL +KG HH+ QYLP E+ER L +S + E DF N+L AE N+G Q+LKK GW EG+GLG EG+ PVNM G E EG ++FE YR+RMMLAYRFRPNPLNNPRR+YY Sbjct: 837 RRDAKSAGL--ALPETMDADQEEQLRQQKEMQRLEARVREAAARQAMPGAGVAAAAAAAGGKPEGEAERRMRELYEERLREYGDLATGDEKEEEERDTV-----EDAEATGGVIDGGTWEHRKRAKEMLKTAEGALNVTLQAKGAHHMGQYLPKDELERFLKKSGKAAKGEEAEAEEDFEKNKL-AEDNIGFQMLKKAGWTEGKGLGKEGEGAA-VPVNMAAG--ADGAGVGVKETHEVTEGDNEFEQYRKRMMLAYRFRPNPLNNPRRSYY 1097
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|926637379|ref|XP_013784662.1| (PREDICTED: SURP and G-patch domain-containing protein 1-like [Limulus polyphemus]) HSP 1 Score: 161.384 bits (407), Expect = 1.369e-39 Identity = 154/551 (27.95%), Postives = 247/551 (44.83%), Query Frame = 0 Query: 4 SQQYYPPSSAPPPSPPQ-QPQQQEEYDPLAATS-SQANEGGPPGAYDPLGAPPPPPPPPPSNTPAPTNIYADAQGSFIERFAQMKEEKER--EDK----SLQEAERQVKALKEAHARRVAAENQSQRKRKGGRSGGVMMKRRGGAGTVASVFSMEDDEDEEGDEE-------GKKGQLEAGEEGGPQPPKRSRWASEGEKDVEHGEERMTEEMEAKIRALAAWKVKNPERG-SQLEEERRGQPGTAAVAKKPKR-NRWGPESGVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGV---------EDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 ++ ++ + S P Q Q E P+A T+ S N +++ + PA +++ + GSF+ERF Q++ EK++ +DK S+ A K LK + + +N+ + + R V S+ED++ + E +G EA P + ++ ++ +R+ E +AK RA A+ +K + S+ + + +K KR +RWGP+ P+ P L + ++ + P + K Q L I+ A ++ + E K++E ++ ++ Y+ + K+ + E R AG V +GGTWEH+KRA EM +T A +T KG+HH+ +LP E+ER ++ G+ D D+ +L+ E N+G Q+L+K GW EGQGLGA+G +G+ APVN T E G G G EE G D++E YR+RMMLAYRFRPNPLNNPRR YY Sbjct: 74 TETFHQTCNIKSTSLPSGQDSTQHELAPVAMTNISNTNTVVANVSFNT------SNQSDKLHVPAAGDLFKN-DGSFLERFKQLQAEKDKPGDDKTKGISMILAPNTSKVLKPSSVVDILDDNEEESTVEKDR-----------------VSSLEDNKSCQAVERVAISVAVNGQGAEEAARTANIDNPAFNFLNNKQSFTYKYFLQRVKELTQAKKRAEASGSIKTEGKSRSEFNSDSDSNSNSDEPKRKKKRLSRWGPQDKTLPA--PGVAGVLTTGI-------------MNSHFPEFV-----------KHDQGL---IKYAVQVFGRTDLTLEQWKQLEDQRKMSVLYQMMEAKQKQN------------EQLRKAGKVRYDYDSDEETEGGTWEHKKRAVEMEKTKAVAEELTEFGKGKHHIGDFLPPDELERFMEKWDAMKEGRAPDLSDYKDFKLK-EDNIGFQMLQKLGWTEGQGLGADG-SGIVAPVNKATAPVEKAGFGQGRPEEVSV-GDDEYEAYRKRMMLAYRFRPNPLNNPRRPYY 556
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|1101360444|ref|XP_018906530.1| (PREDICTED: R3H domain-containing protein 1-like [Bemisia tabaci]) HSP 1 Score: 164.081 bits (414), Expect = 2.288e-39 Identity = 113/306 (36.93%), Postives = 158/306 (51.63%), Query Frame = 0 Query: 237 KKPKRNRWGPES-----GVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVE---------DGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 KK +R+RW PE P P A P PP+L P KD LP V + AM Q Q+R AL + R++ L+E E K+ E + L Y+++ K E E RAAG + +GGTWEH+ R EM+ T A +T +KG+HH+ +LP E+ER ++ G+ D D+ +L E N+G Q+L+K GW+EG+GLG++G +G+ PVN ++ E G+G E G D+++ YR+RMMLAYRFRPNPLNNPRR YY Sbjct: 950 KKKRRSRWAPEDCKVNLSTPTLLPTGAVP--PPTLTPIINTKD---------LPGV--SGAMIS-QVQRRDPALLQYARQSFGTINLSE---EDWKKCEDHYKINLLYQDMLRKRE------------EIEKLRAAGKFKYEYDSDEETEGGTWEHKLRRDEMVATQLWADELTEKAKGKHHIGDFLPPDELERFMEKYNALKEGREPDLSDYKEFKLR-EDNIGFQMLQKLGWSEGKGLGSDG-SGIVDPVNKASSRMENQGLGVEKPAEVNR-GDDEYDAYRKRMMLAYRFRPNPLNNPRRPYY 1223
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|449679683|ref|XP_002158499.2| (PREDICTED: SURP and G-patch domain-containing protein 1-like [Hydra vulgaris]) HSP 1 Score: 152.91 bits (385), Expect = 7.169e-39 Identity = 71/157 (45.22%), Postives = 105/157 (66.88%), Query Frame = 0 Query: 372 DGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 +GGTWEH+KR +EM++T E A +T +KG+HH++ +LP E+E+ L+ G+ D D+A +++ E N+G ++L+K GW EG+GLG++G G+ P+N + G+G E ++ DDFE YR+RMMLAY+FRPNPLNNPRR YY Sbjct: 134 EGGTWEHKKRHQEMMKTLEWARDLTENAKGKHHLSDFLPPEELEKFLEKVKAVKEGREADFSDYAKYKIQ-EDNIGFKMLQKAGWKEGEGLGSKG-DGIVQPINKGKVSFDQSGIGVEKVHEV-QQDDDDFEVYRKRMMLAYKFRPNPLNNPRRPYY 287
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|762141192|ref|XP_011453777.1| (PREDICTED: formin-like protein 20 [Crassostrea gigas]) HSP 1 Score: 159.844 bits (403), Expect = 4.910e-38 Identity = 111/309 (35.92%), Postives = 161/309 (52.10%), Query Frame = 0 Query: 224 EERRGQPGTAAVAKKPKRNRWGPESGVPPSAPPSAP-PSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVED--GGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDD-FENYRRRMMLAYRFRPNPLNNPRRAYY 528 EE G+ + + K+ KR+RWGP+ P P P P + S PP +D + + + + Q++ Q+ + + + I LA+ K+VE E AL E++A + + N+ ED GGTWEH+ R EM T + A +T A+KG+H + +LP E+ER +++ G+ D D+ +L + N+G Q+L+K GW EG+GLG+EG+ G+K PVN + EG GVG E A E DD F+ YR+RMMLAYRFRPNPLNNPRR YY Sbjct: 728 EEMDGKSASGSKMKRKKRSRWGPQDDQPQVPPVGVPIPHVVQSRPPQVTLQDFARKMVGS---DTLSEDQIKQIRHQQEMNMMYELI--------LAK------KKVE---EAALMEEQMASMSAA---------SFKKVNKYEYDSDEDIEGGTWEHKNRTAEMEATRDWAEALTEANKGKHFIGDFLPPDELERFMETFRALKEGREPDLSDYKDFKLTCD-NLGYQMLQKLGWKEGEGLGSEGQ-GIKNPVNKGSVSVEGRGVGT--ERPAALEKDDDEFDAYRKRMMLAYRFRPNPLNNPRRPYY 1003
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|405974767|gb|EKC39389.1| (Splicing factor 4 [Crassostrea gigas]) HSP 1 Score: 159.844 bits (403), Expect = 5.815e-38 Identity = 111/309 (35.92%), Postives = 161/309 (52.10%), Query Frame = 0 Query: 224 EERRGQPGTAAVAKKPKRNRWGPESGVPPSAPPSAP-PSLPPSLPPSTRKKDGKKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVED--GGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDD-FENYRRRMMLAYRFRPNPLNNPRRAYY 528 EE G+ + + K+ KR+RWGP+ P P P P + S PP +D + + + + Q++ Q+ + + + I LA+ K+VE E AL E++A + + N+ ED GGTWEH+ R EM T + A +T A+KG+H + +LP E+ER +++ G+ D D+ +L + N+G Q+L+K GW EG+GLG+EG+ G+K PVN + EG GVG E A E DD F+ YR+RMMLAYRFRPNPLNNPRR YY Sbjct: 752 EEMDGKSASGSKMKRKKRSRWGPQDDQPQVPPVGVPIPHVVQSRPPQVTLQDFARKMVGS---DTLSEDQIKQIRHQQEMNMMYELI--------LAK------KKVE---EAALMEEQMASMSAA---------SFKKVNKYEYDSDEDIEGGTWEHKNRTAEMEATRDWAEALTEANKGKHFIGDFLPPDELERFMETFRALKEGREPDLSDYKDFKLTCD-NLGYQMLQKLGWKEGEGLGSEGQ-GIKNPVNKGSVSVEGRGVGT--ERPAALEKDDDEFDAYRKRMMLAYRFRPNPLNNPRRPYY 1027
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|585186300|ref|XP_006744643.1| (PREDICTED: SURP and G-patch domain-containing protein 1 [Leptonychotes weddellii]) HSP 1 Score: 150.599 bits (379), Expect = 2.569e-37 Identity = 105/308 (34.09%), Postives = 156/308 (50.65%), Query Frame = 0 Query: 228 GQPGTAAVAKKPKRNRWGPESG---VPPSAPPSAPPSLPPSLPPSTRKKDG----KKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 G+P T A KK +++RWGPE +PP+ PS P S + G K + T + A QL+EQ+ +Q + I + R ++++L E+AL ++ G E + + + GTWEH+ R EM +T E A +T +G+H + +LP E+E+ +++ G+ D ++ +L E N+G Q+L K GW EG GLG+EG+ G+K PVN TT +G G G E +E D++E +R+RMMLAYRFRPNPLNNPRR YY Sbjct: 78 GKPTTTATVKKKRKSRWGPEEDKVELPPAELVQRDVDASPS-PLSVQDLKGLGYEKGKPVGLVGVTELSDAQKKQLKEQQEMQQMYDMIMQHKR----------AMQDMQLLWEKAL------QQHQHGYDSDEEVDS-------------ELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVE-NIGYQMLMKMGWKEGDGLGSEGQ-GIKNPVNKGTTTVDGAGFGIDRPAELSKED-DEYEAFRKRMMLAYRFRPNPLNNPRRPYY 352
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|1048451616|ref|XP_017497755.1| (PREDICTED: SURP and G-patch domain-containing protein 1 [Manis javanica]) HSP 1 Score: 148.288 bits (373), Expect = 5.612e-36 Identity = 103/308 (33.44%), Postives = 155/308 (50.32%), Query Frame = 0 Query: 228 GQPGTAAVAKKPKRNRWGPESG---VPPSAPPSAPPSLPPSLPPSTRKKDG----KKNALDEYLPTVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 G+P A K+ +++RWGPE +PP+ PS P S + G K + T + A QL+EQ+ +Q + I + R ++++L E+AL ++ G E + + + GTWEH+ R EM +T E A +T +G+H + +LP E+E+ +++ G+ D ++ +L E N+G Q+L K GW EG GLG+EG+ G+K PVN TT +G G G E +E D++E +R+RMMLAYRFRPNPLNNPRR YY Sbjct: 122 GKPAATATVKRKRKSRWGPEEDKVELPPAELVQKDVDASPS-PLSVQDLKGLGYEKGKPVGLVGVTELSDAQKKQLKEQQEMQQMYDMIMQHKR----------AMQDMQLLWEKAL------QQHQHGYDSDEEVDS-------------ELGTWEHQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVE-NIGYQMLMKMGWKEGDGLGSEGQ-GIKNPVNKGTTTVDGAGFGIDRPAELSKED-DEYEAFRKRMMLAYRFRPNPLNNPRRPYY 396
BLAST of EWM24726.1 vs. NCBI_GenBank
Match: gi|1147379954|ref|XP_020039309.1| (SURP and G-patch domain-containing protein 1 isoform X1 [Castor canadensis]) HSP 1 Score: 152.14 bits (383), Expect = 6.034e-36 Identity = 102/307 (33.22%), Postives = 154/307 (50.16%), Query Frame = 0 Query: 228 GQPGTAAVAKKPKRNRWGPESGVPPSAPPSAPPSLPPSLPPSTRKKDGKKNALDEYLP------TVMDAAAMTQLQEQKRIQALEKKIREAARLKALAEGGKEGGKEVELFQERALYYEELAEKEGKGQSEGEAIRAIEAENRRAAGGVEDGGTWEHRKRAKEMLQTAEDALHVTLASKGRHHVAQYLPAGEMERLLQSAGKGGAGKGGDEGDFAANRLEAETNVGMQLLKKQGWNEGQGLGAEGKTGVKAPVNMQTTGGEGVGVGGGGEEEAGEEGGDDFENYRRRMMLAYRFRPNPLNNPRRAYY 528 G+P + K+ +++RWGPE P P + P +D K ++ P T + A QL+EQ+ +Q + I + R ++V+L E+AL ++ G E + + + GTWEH+ R EM +T E A +T +G+H + +LP E+ER +++ G+ D ++ +L E N+G Q+L K GW EG+GLG+EG+ G+K PVN TT +G G G E +E D++E +R+RMMLAYRFRPNPLNNPRR YY Sbjct: 368 GKPASTTTVKRKRKSRWGPEEDKVELPPAELVPRDVDAAPSPLSVQDLKGLGYEKGKPVGLVGVTELSEAQKKQLKEQQEMQQMYDMIMQHKR----------AMQDVQLLWEKAL------QQHQHGYDSDEEVDS-------------ELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELERFMETFKALKEGREPDYSEYKEFKLTVE-NIGYQMLVKMGWKEGEGLGSEGQ-GIKNPVNKGTTTVDGAGFGIDRPAELSKED-DEYEAFRKRMMLAYRFRPNPLNNPRRPYY 642 The following BLAST results are available for this feature:
BLAST of EWM24726.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|