rna5959, rna5959 (mRNA) Nannochloropsis gaditana

Overview
Namerna5959
Unique Namerna5959
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1919
Alignment locationCM002467.1:206293..207659 -

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Properties
Property NameValue
ProductAnkyrin repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100459g3.451.mrna
Orig protein idgnl|cribi|Naga_100459g3.451
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:206293..207659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100459g3gene5756Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24731.1cds5944Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5959rna5959-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5959 ID=rna5959|Name=rna5959|organism=Nannochloropsis gaditana|type=mRNA|length=1919bp
GCAGTTGTTATCGAACATTTCACAGGCCAAAAACAGGAAGACAACGAGGG
GAAATCGAGTAGCTGCAGAGAAGATGATGAATGCTCCGGTCATGGTATTA
AATGCCAACACCAAACGAGAAACCGGTCGGACCGCTCAGCTGGGAAATAT
CGCAGCTGCTAAAGCTGTATCGGATATTGTTAGGACAACACTTGGTCCAC
GCGCCATGTTGAAAATGCTTTTGGATCCGATGGGCGGGATTGTGATCACG
AACGACGGGCATTGCATATTAAGGGAAGTGGACGTTTCCCACCCTGCTGC
CAAGAGCATGATTGAGCTGAGCCGAGCCCAGGACGAGGAAGTTGGGGACG
GAACGACCAGTGTCATCATTTTGGCAGGTGAAATGCTCGCGCAAGCAGAG
CCGTTCCTTCACCGGAACATACACCCGACGCAAATCGTGGCAGGCTACAG
CAAAGCGCTCCAAGAAGCACTCAAAGTGTGCAACGCGCTGGCCAAACCCA
TCGATGTCAATGATAAGCAAGCCCTTTCTCAGATCGTCTCCGCCTGTGTC
GGCACCAAATTTTCGAGTCGCTGGGGCCCCTTCATGGTGGATCTGGCGGT
GGACAGTGTGTTGAAGGTTGTGCGGCAGGTCGGGGGGGAGGGCGGGGCGG
AGGGCGGTTACAAGGAATGCGACGTCAAGCGCTACGTGCGGGTGGAGAAG
ATTCCCGGAGGCGAGTTGGGAGATTCGAAAGTCATCGACGGCGTCATGTT
CAACAAAGACGTGACGCACTCGAAGATGCGGCGACGCATCGAGAAGCCGC
GTATCCTCCTCTTGGACTGCCCCTTGGAGTACAAGAAGGGCGAGAGTCAG
ACCAACGTGGAGGTGAAGCAAGAGGAAGACTGGAACACCTTGTTGCGGAT
GGAGGAAGAATTCATCGAGAAGATGTGCGCGGAAATCGTGGCCTTTCGCC
CCGACATTGTGATCACGGAGAAAGGCGTGAGTGACTTGGCCCAGCACTAC
CTGTTGAAAGCCGGGGTCACGGCCTTCCGCCGGGTGCGGAAGAGCGACAA
CAACCGGATTGCGCGGGCCGTGGGCGCCGTGATTGTGAGTCGCCCCGACG
AAATCCAGGAGGGGGACGTCGGGACGGGCTGTGGCCTCTTTGAGGTACGG
AAAATCGGTGACGAATACTTCGCCTTTTTAGAGCAATGCGAGCAGCCCCA
GGCCTGCACCGTGCTCCTCCGGGGGGGCAGCAAGGACGTGTTGAACGAGG
TGGAACGGAATTTGCAGGACGCCTTGCAGGTGGTGAGGAATTTGGTTTTC
GAGAGCAAGCTTTTGCCGGGGGGAGGGGCGACAGAGATGGCGGTGGGGCA
GGCCCTGGCTCGGGCGTCGACGGAGGTGGAGGGCGTGCAACAGTGGCCCT
ACAAGGCGGTCGGGGAGGCCTTGGAGGTGATCCCTCGGACCCTGGCTCAG
AATTGTGGGACGAACGTTTTGCGGATCATGACGCAATTGCGGGCCAAGCA
CGCGCAGGGCCCGACCACCTGGGGCATCGACGGGGAGAAAGGTATTTTGG
TGCCGATGGAGACGTTGGGCGTGTGGGAGCCTTACGCAGTCAAAGTGCAG
ACGATCAAGACGGCGGTGGAGGCGGCGTGCATGCTGCTGCGGATCGACGA
CGTGGTGAGCGGGATGAAGAAGAAGAAGTGAGGAGAAAAGAGGGGGGGGG
TTGGGGGCTAGGAGGGGATGAGGGCGGAGCTGGAGGATGAGGTGGGTGGT
GCCACGTCTTGGCTGGACGGAGACAAAGGGATAAAACGGCAGTAGGGTGG
TCTGCCGCGCGTGGCAAACGGCGGGGAAAGGAGTGTGGACAAGCGAGAGC
TAGCGGCCCTGCGGGTCCTTCCTGAGTGGATCGGTACAAAAGAAATTAAG
ATCAATGCACGTATCGTAT
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protein sequence of rna5959

>rna5959-protein ID=rna5959-protein|Name=rna5959|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MLSIDHPATSVLLERVLASNAIKEYDTAAIISRLTSSPPISLDEVNYQDE
QGRSPLGVAVTREGQSDLVKALVEEGNASLGLRDARLRTPLLLASEFNQT
SNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVA
RAQASDVQNPENGNSSSVLSLLVNEKTSSGETPLFWLAQSIADTNKKSKE
KRFERAEAHDHTDEAVAHCHDDKASTNDILEIARLLVGAGAEPRAGNALG
QSPATLVNQMRARAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDV
RGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATL
SPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAK
QDRI
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mRNA from alignment at CM002467.1:206293..207659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5959 ID=rna5959|Name=rna5959|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at CM002467.1:206293..207659- (Nannochloropsis gaditana)
TGGTCGCTGTAAAAGCTTCATTTCTTTGTTCCCCTTCTCCCAATAACACG
GAACATGTCCCTTTGCTAAGTCACATATCTATTATGAAAACAAATTCAGA
CGCTTTTGATGATTTAATTGAATTCGCATGCTCTCTATCGACCACCCCGC
GACCTCCGTGCTGCTTGAACGAGTTCTTGCATCGAATGCCATCAAAGAAT
ACGACACTGCAGCAATAATCTCTCGCCTTACATCGTCTCCTCCGATCAGC
CTCGATGAAGTCAACTACCAAGATGAGCAGGGTCGAAGTCCTTTGGGAGT
TGCCGTCACAAGAGAAGGACAATCGGACCTTGTGAAGGCTTTGGTCGAGG
AAGGGAATGCTAGCCTGGGCCTGCGAGACGCTCGTCTTCGGACACCTTTA
TTGCTCGCTTCTGAGTTCAACCAGACTTCCAATGTCTTATATCTGCTAAA
AAAGCTCCAGGCGCAAAATAATAAATGGCGTTTGGCCGACGAACGCGATT
GCTTTCGCAGGGGGCCTTTGCATTATATGTGTAAGCATTGGAACGTGGAA
GGAGTACAAGCTCTCGTTTCCGTCGCGAGAGCGCAAGCTAGCGATGTTCA
GAATCCAGAAAATGGAAATTCAAGCAGTGTGCTATCACTGCTTGTGAACG
AGAAAACTAGCAGTGGAGAAACGCCGCTTTTTTGGCTCGCGCAATCCATT
GCTGATACCAATAAGAAATCGAAAGAGAAGAGGTTCGAACGGGCCGAAGC
CCACGACCACACGGACGAGGCAGTCGCACATTGCCACGACGACAAGGCAA
GCACGAATGATATTTTGGAAATTGCGCGGCTCCTTGTCGGAGCAGGAGCG
GAGCCAAGGGCTGGAAATGCCTTGGGCCAATCACCGGCGACATTGGTCAA
TCAAATGAGGGCAAGGGCAAAGGAGGGGAGGGTAGAGGAATTGAAAGAGG
GCCTTCAGGCGCTATTTTTGGCAGCCGAAGGAAAATGCGAGGATGAAGAG
GCGTGGGAGGTGAAAAAGGAGGACGTAAGGGGGGCTTCAGGAGTTGCTGT
CGAGGCTTCCCGGGACAGTCCTACGGGATCCTCCTCTACCCTGCCCGGTG
TCTCTCAGGGGCCTCAACCATGCAGGAATTCCTTGGCGTCCTTGCCCGCA
CGCCGAGAGGGGTCGTCGGCCACGCTTTCTCCAGGAGGCGTGGGGTTGGT
AAGGGCTTTGGGTGGGCAGACGAACGGAAGGCAGGGAGCCGCAGGGGGAG
GCCGGGGCCCTGGCGGGGCGGTGGGGAAAAAGCTCAGGATCAAAATGAGG
GCACCCACAGGGGAACAGGATGCCAAGCAAGACAGAATATGAACGAAAAT
GGTCACAAGTGTAAACA
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Coding sequence (CDS) from alignment at CM002467.1:206293..207659-

>rna5959 ID=rna5959|Name=rna5959|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002467.1:206293..207659- (Nannochloropsis gaditana)
ATGCTCTCTATCGACCACCCCGCGACCTCCGTGCTGCTTGAACGAGTTCT
TGCATCGAATGCCATCAAAGAATACGACACTGCAGCAATAATCTCTCGCC
TTACATCGTCTCCTCCGATCAGCCTCGATGAAGTCAACTACCAAGATGAG
CAGGGTCGAAGTCCTTTGGGAGTTGCCGTCACAAGAGAAGGACAATCGGA
CCTTGTGAAGGCTTTGGTCGAGGAAGGGAATGCTAGCCTGGGCCTGCGAG
ACGCTCGTCTTCGGACACCTTTATTGCTCGCTTCTGAGTTCAACCAGACT
TCCAATGTCTTATATCTGCTAAAAAAGCTCCAGGCGCAAAATAATAAATG
GCGTTTGGCCGACGAACGCGATTGCTTTCGCAGGGGGCCTTTGCATTATA
TGTGTAAGCATTGGAACGTGGAAGGAGTACAAGCTCTCGTTTCCGTCGCG
AGAGCGCAAGCTAGCGATGTTCAGAATCCAGAAAATGGAAATTCAAGCAG
TGTGCTATCACTGCTTGTGAACGAGAAAACTAGCAGTGGAGAAACGCCGC
TTTTTTGGCTCGCGCAATCCATTGCTGATACCAATAAGAAATCGAAAGAG
AAGAGGTTCGAACGGGCCGAAGCCCACGACCACACGGACGAGGCAGTCGC
ACATTGCCACGACGACAAGGCAAGCACGAATGATATTTTGGAAATTGCGC
GGCTCCTTGTCGGAGCAGGAGCGGAGCCAAGGGCTGGAAATGCCTTGGGC
CAATCACCGGCGACATTGGTCAATCAAATGAGGGCAAGGGCAAAGGAGGG
GAGGGTAGAGGAATTGAAAGAGGGCCTTCAGGCGCTATTTTTGGCAGCCG
AAGGAAAATGCGAGGATGAAGAGGCGTGGGAGGTGAAAAAGGAGGACGTA
AGGGGGGCTTCAGGAGTTGCTGTCGAGGCTTCCCGGGACAGTCCTACGGG
ATCCTCCTCTACCCTGCCCGGTGTCTCTCAGGGGCCTCAACCATGCAGGA
ATTCCTTGGCGTCCTTGCCCGCACGCCGAGAGGGGTCGTCGGCCACGCTT
TCTCCAGGAGGCGTGGGGTTGGTAAGGGCTTTGGGTGGGCAGACGAACGG
AAGGCAGGGAGCCGCAGGGGGAGGCCGGGGCCCTGGCGGGGCGGTGGGGA
AAAAGCTCAGGATCAAAATGAGGGCACCCACAGGGGAACAGGATGCCAAG
CAAGACAGAATATGA
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Synonyms
Publications