EWM24731.1, cds5944 (CDS) Nannochloropsis gaditana

Overview
NameEWM24731.1
Unique Namecds5944
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:206318..207532 -

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Properties
Property NameValue
Protein idEWM24731.1
ProductAnkyrin repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100459g3.451.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:206318..207532 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
Homology
BLAST of EWM24731.1 vs. NCBI_GenBank
Match: gi|585106267|gb|EWM24731.1| (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0
Query:    1 MLSIDHPATSVLLERVLASNAIKEYDTAAIISRLTSSPPISLDEVNYQDEQGRSPLGVAVTREGQSDLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENGNSSSVLSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHDDKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRARAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDVRGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATLSPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAKQDRI 404
            MLSIDHPATSVLLERVLASNAIKEYDTAAIISRLTSSPPISLDEVNYQDEQGRSPLGVAVTREGQSDLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENGNSSSVLSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHDDKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRARAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDVRGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATLSPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAKQDRI
Sbjct:    1 MLSIDHPATSVLLERVLASNAIKEYDTAAIISRLTSSPPISLDEVNYQDEQGRSPLGVAVTREGQSDLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENGNSSSVLSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHDDKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRARAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDVRGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATLSPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAKQDRI 404          
BLAST of EWM24731.1 vs. NCBI_GenBank
Match: gi|1069520736|ref|XP_018146224.1| (ankyrin repeat-containing protein [Pochonia chlamydosporia 170] >gi|1032862914|gb|OAQ69687.1| ankyrin repeat-containing protein [Pochonia chlamydosporia 170])

HSP 1 Score: 62.7734 bits (151), Expect = 7.017e-7
Identity = 67/227 (29.52%), Postives = 106/227 (46.70%), Query Frame = 0
Query:   44 EVNYQDEQGRSPLGVAVTREGQSDLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSV--ARAQASDV-------QNPENGNSSSVLSLL-------VNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHDDKASTNDILEIARLLVGA-GAEPRAGNALGQSP 253
             V+ +D+ G +PL  A +  G   + + L++ GNA + ++ A LRTPLLLA+     +    LL K  A  N    ADE  C    PL    ++ NV+ VQ L++       A D        +  ENG+  +VL LL       ++ K  +G T L+W A+   +T++   E+     +AH    +A        A+ N    I +LL+G  GA+  A +  G+ P
Sbjct: 1042 HVDTKDQNGETPLSWAAS-NGHHAVAELLIDTGNADVNVKGAYLRTPLLLAACNGHIAMAKLLLDKGNADINA---ADEGGC---TPLSLAAQNGNVDIVQLLLNTGGVNVNAKDTFGGTALSRAAENGH-PAVLKLLLDTGNIDIDSKDVNGWTALWWAAE---NTHEAIVEQLLHTGKAHADVKDAYGRTPLWWAAQNGHAAIVKLLLGVGGADVNAKDVYGRIP 1257          
The following BLAST results are available for this feature:
BLAST of EWM24731.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106267|gb|EWM24731.1|0.000e+0100.00Ankyrin repeat-containing domain protein [Nannochl... [more]
gi|1069520736|ref|XP_018146224.1|7.017e-729.52ankyrin repeat-containing protein [Pochonia chlamy... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5959rna5959Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications