rna5958, rna5958 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5958
Unique Name	rna5958
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1181
Alignment location	CM002467.1:204002..206282 +

Link to JBrowse

Properties


Property Name	Value
Product	t-complex protein 1 subunit gamma
Orig transcript id	gnl\|cribi\|Naga_100459g4.449.mrna
Orig protein id	gnl\|cribi\|Naga_100459g4.449
Gene	CCT3
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:204002..206282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CCT3	gene5755	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5958	rna5958-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24729.1	cds5943	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:204002..206282+
coding sequence from alignment at CM002467.1:204002..206282+

mRNA sequence

>rna5958 ID=rna5958|Name=rna5958|organism=Nannochloropsis gaditana|type=mRNA|length=1181bp
ATGCAGCCGGGCAGACACGTCGCCACCGGGACCGCCAGGACCGGGCCCTA
GAGTGTGAGCAGCGGAATGGAAGCATTGCCCTGGCTCGTCCCAAGGGGGG
GCGCTCGCGTCAGGCTGCCCACAAGCACGAGGAGGCTGGCGCTGAGACCC
GCTCTCTCCTTTTCCAGAAGGTCCTTCCTCCCTTGCCCTGCCTCCCGACC
TACCACCAGCGTCACGACCAAGCTGTGGAGACGGTGGACGTGGTGTGGAG
GGAGGGAGGGACGAAAGGAGGGAGGGAGGGAGGGCAGGAGAAGGGGAAAG
TGCCCATGTGGGGTCTTCCGCTCTCCCGCGCCATTTCCTCCCCCGACTTC
TTCTCCGAAGCCAAGCGAAGTCTGTGGGAAGGCAAAGGAGTGGGAGGGGG
GGAGGGAGGGGGAGAGAGAGGGACGGGTCACAATGGCTTTCGGACCGGCA
CGAGCCAGAAGGTCAAGACACCTCTGCCTCCCTACATTCCTCCCTCTCTT
CCTCCCCTCCCACCGGTACTGAAAGAACGACCGCACAGTCTCTCCGAAAG
TGGCCGCCCAGCGAGGAGAGAAACAGGAAAGGAGGATGGGCAGGACGGAG
GAAGGGAAGGAGGAAGGGATGGAGGGTGGAGTGAGAGGGTGGAGGGAGCC
GGTAAATTGAATTTGGGGGGAAACGTGATGATGGAGAGGAAGAACAGGGT
CCTGCGCGAGTCAGAGGCGTTTCGAAAAGCCTACTTTCACTACGTGGAGG
TTCTCCTTCGTGATGTCGTTAGGAGGAAGCGGGAGGCTAGGCAGAGGAGA
AGGGAGGAGGAAGAGGAAGGAGGAGGAGAGAGCGTGGTCCCATGAAGATT
AGTGTACACAGGCAGCAACAATGTTGAGGGGGACTTGTCAGGGGTAGATA
GAAATAATTGTGCATCTTAGTCTCTTCTGGGGTCGGTTGGGCCTGGGAGC
ACGCAAAGAATCGCAATGGCAGCGTAACCGAGCCGCAGCAGTAATAGAAT
GGACAGACGCGACAGCAGTCACGGAACCTTACAGAAGACAAAATTTGGCA
TTGACGTGAGAATGATTCAATGTTATGCGACAGAAATCATGGCGTAAATA
AATGGAGCCTCCACTCATATGGCCTTAAAAAGAGGAAGATATTACAGATG
TACCTGCACTTTGAAAGTATGCCCCGGTCGC

protein sequence of rna5958

>rna5958-protein ID=rna5958-protein|Name=rna5958|organism=Nannochloropsis gaditana|type=polypeptide|length=535bp
MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLL
DPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIIL
AGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQA
LSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECD
VKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCP
LEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEK
GVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVG
TGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDA
LQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEAL
EVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGV
WEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK

mRNA from alignment at CM002467.1:204002..206282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5958 ID=rna5958|Name=rna5958|organism=Nannochloropsis gaditana|type=mRNA|length=2281bp|location=Sequence derived from alignment at CM002467.1:204002..206282+ (Nannochloropsis gaditana)
GCAGTTGTTATCGAACATTTCACAGGCCAAAAACAGGAAGACAACGAGGG
GAAATCGAGTAGCTGCAGAGAAGATGATGAATGCTCCGGTCATGGTATTA
AGTAAGTAGCCCTTAGTTTTTTATTCAGTGCCTCGAAAAAAAGAACAATT
TGTTTCATCACAgtccttttttcccattcATTAaactttcttttccactg
CCGTTCGAAGACGCATTAACTGTGTATAATGATGTCACAATCATGTGCTG
CCACCGCTATTCACCGTCTTAAACGCTTTTCTTAATATTCTTCCGCCCTT
CCTATCGTCCGTGATCATCTGATAGATGCCAACACCAAACGAGAAACCGG
TCGGACCGCTCAGCTGGGAAATATCGCAGCTGCTAAAGCTGTATCGGATA
TTGTTAGGACAACACTTGGTCCACGCGCCATGTTGAAAATGCTTTTGGAT
CCGATGGGCGGGATTGTGATCACGAACGACGGGCATTGCATATTAAGGGA
AGTGGACGTTTCCCACCCTGCTGCCAAGAGCATGATTGAGCTGAGCCGAG
cccaggacgaggaagttGGGGACGGAACGACCAGTGTCATCATTTTGGCA
GGTGCGGTGACggtctttctctcccatAACCTGTAGGGGGCTTGATGACA
CCCGGGGGCCTTCGTAGCCGATCAAACTGTGTAGAATATTTTGGACTGCA
GGTGACTTATCTCTTTCCCTTGGATCTCTTTTTTGACAGGTGAAATGCTC
GCGCAAGCAGAGCCGTTCCTTCACCGGAACATACACCCGACGCAAATCGT
GGCAGGCTACAGCAAAGCGCTCCAAGAAGCACTCAAAGTGTGCAACGCGC
TGGCCAAACCCATCGATGTCAATGATAAGCAAGCCCTTTCTCAGATCGTC
TCCGCCTGTGTCGGCACCAAATTTTCGAGTCGCTGGGGCCCCTTCATGGT
GGATCTGGCGGTGGACAGTGTGTTGAAGGTTGTGCGgcaggtcggggggg
agggcggggcggagggcggttACAAGGAATGCGACGTCAAGCGCTACGTG
CGGGTGGAGAAGATTCCCGGAGGCGAGTTGGGAGATTCGAAAGTCATCGA
CGGCGTCATGTTCAACAAAGACGTGACGCACTCGAAGATGCGGCGACGCA
TCGAGAAGCCGCGTATCCTCCTCTTGGACTGCCCCTTGGAGTACAAGAAG
GGCGAGAGTCAGACCAACGTGGAGgtgaagcaagaggaagactGGAACAC
CTTGTtgcggatggaggaagaattCATCGAGAAGATGTGCGCGGAAATCG
TGGCCTTTCGCCCCGACATTGTGATCACGGAGAAAGGCGTGAGTGACTTG
GCCCAGCACTACCTGTTGAAAGCCGGGGTCACGGCCTTCCGCCGGGTGCG
GAAGAGCGACAACAACCGGATTGCGCGGGCCGTGGGCGCCGTGATTGTGA
GTCGCCCCGACGAAATCCAGGAGGGGGACGTCGGGACGGGCTGTGGCCTC
TTTGAGGTACGGAAAATCGGTGACGAATACTTCGCCTTTTTAGAGCAATG
CGAGCAGCCCCAGGCCTGCACCGTGCTCCTCCGGGGGGGCAGCAAGGACG
TGTTGAACGAGGTGGAACGGAATTTGCAGGACGCCTTGCAGGTGGTGAGG
AATTTGGTTTTCGAGAGCAAGCTTttgccggggggaggggcgacagAGAT
GGCGGTGGGGCAGGCCCTGGCTCGGGCGTcgacggaggtggagggcgtgc
aaCAGTGGCCCTACAAGGCGGtcggggaggccttggaggtgaTCCCTCGG
ACCCTGGCTCAGAATTGTGGGACGAACGTTTTGCGGATCATGACGCAATT
GCGGGCCAAGCACGCGCAGGGCCCGACCACCTGGGGCATCgacggggaga
aaggtaTTTTGGTGCCGATGGAGACGTTGGGCGTGTGGGAGCCTTACGCA
GTCAAAGTGCAGACGATCAAgacggcggtggaggcggcgtgCATGCTGCT
GCGGATCGACGACGTGGTGAGcgggatgaagaagaagaagtgaggagaaa
agagggggggggttgggggctaggaggggatgagggcggagctggaggat
gaggtggGTGGTGCCACGTCTTGGCTGGACGGAGACAAAGGGATAAAACG
GCAGTAGGGTGGTCTGCCGCGCGTGGCAAacggcggggaaaggagtgTGG
ACAAGCGAGAGCTAGCGGCCCTGCGGGTCCTTCCTGAGTGGATCGGTACA
AAAGAAATTAAGATCAATGCACGTATCGTAT

Coding sequence (CDS) from alignment at CM002467.1:204002..206282+

>rna5958 ID=rna5958|Name=rna5958|organism=Nannochloropsis gaditana|type=CDS|length=4824bp|location=Sequence derived from alignment at CM002467.1:204002..206282+ (Nannochloropsis gaditana)
ATGATGAATGCTCCGGTCATGGTATTAAATGCCAACACCAAACGAGAAAC
CGGTCGGACCGCTCAGCTGGGAAATATCGCAGCTGCTAAAGCTGTATCGG
ATATTGTTAGGACAACACTTGGTCCACGCGCCATGTTGAAAATGCTTTTG
GATCCGATGGGCGGGATTGTGATCACGAACGACGGGCATTGCATATTAAG
GGAAGTGGACGTTTCCCACCCTGCTGCCAAGAGCATGATTGAGCTGAGCC
GAGcccaggacgaggaagttGGGGACGGAACGACCAGTGTCATCATTTTG
GCAGGTGAAATGCTCGCGCAAGCAGAGCCGTTCCTTCACCGGAACATACA
CCCGACGCAAATCGTGGCAGGCTACAGCAAAGCGCTCCAAGAAGCACTCA
AAGTGTGCAACGCGCTGGCCAAACCCATCGATGTCAATGATAAGCAAGCC
CTTTCTCAGATCGTCTCCGCCTGTGTCGGCACCAAATTTTCGAGTCGCTG
GGGCCCCTTCATGGTGGATCTGGCGGTGGACAGTGTGTTGAAGGTTGTGC
GgcaggtcgggggggagggcggggcggagggcggttACAAGGAATGCGAC
GTCAAGCGCTACGTGCGGGTGGAGAAGATTCCCGGAGGCGAGTTGGGAGA
TTCGAAAGTCATCGACGGCGTCATGTTCAACAAAGACGTGACGCACTCGA
AGATGCGGCGACGCATCGAGAAGCCGCGTATCCTCCTCTTGGACTGCCCC
TTGGAGTACAAGAAGGGCGAGAGTCAGACCAACGTGGAGgtgaagcaaga
ggaagactGGAACACCTTGTtgcggatggaggaagaattCATCGAGAAGA
TGTGCGCGGAAATCGTGGCCTTTCGCCCCGACATTGTGATCACGGAGAAA
GGCGTGAGTGACTTGGCCCAGCACTACCTGTTGAAAGCCGGGGTCACGGC
CTTCCGCCGGGTGCGGAAGAGCGACAACAACCGGATTGCGCGGGCCGTGG
GCGCCGTGATTGTGAGTCGCCCCGACGAAATCCAGGAGGGGGACGTCGGG
ACGGGCTGTGGCCTCTTTGAGGTACGGAAAATCGGTGACGAATACTTCGC
CTTTTTAGAGCAATGCGAGCAGCCCCAGGCCTGCACCGTGCTCCTCCGGG
GGGGCAGCAAGGACGTGTTGAACGAGGTGGAACGGAATTTGCAGGACGCC
TTGCAGGTGGTGAGGAATTTGGTTTTCGAGAGCAAGCTTttgccgggggg
aggggcgacagAGATGGCGGTGGGGCAGGCCCTGGCTCGGGCGTcgacgg
aggtggagggcgtgcaaCAGTGGCCCTACAAGGCGGtcggggaggccttg
gaggtgaTCCCTCGGACCCTGGCTCAGAATTGTGGGACGAACGTTTTGCG
GATCATGACGCAATTGCGGGCCAAGCACGCGCAGGGCCCGACCACCTGGG
GCATCgacggggagaaaggtaTTTTGGTGCCGATGGAGACGTTGGGCGTG
TGGGAGCCTTACGCAGTCAAAGTGCAGACGATCAAgacggcggtggaggc
ggcgtgCATGCTGCTGCGGATCGACGACGTGGTGAGcgggatgaagaaga
agaagtgaATGATGAATGCTCCGGTCATGGTATTAAATGCCAACACCAAA
CGAGAAACCGGTCGGACCGCTCAGCTGGGAAATATCGCAGCTGCTAAAGC
TGTATCGGATATTGTTAGGACAACACTTGGTCCACGCGCCATGTTGAAAA
TGCTTTTGGATCCGATGGGCGGGATTGTGATCACGAACGACGGGCATTGC
ATATTAAGGGAAGTGGACGTTTCCCACCCTGCTGCCAAGAGCATGATTGA
GCTGAGCCGAGcccaggacgaggaagttGGGGACGGAACGACCAGTGTCA
TCATTTTGGCAGGTGAAATGCTCGCGCAAGCAGAGCCGTTCCTTCACCGG
AACATACACCCGACGCAAATCGTGGCAGGCTACAGCAAAGCGCTCCAAGA
AGCACTCAAAGTGTGCAACGCGCTGGCCAAACCCATCGATGTCAATGATA
AGCAAGCCCTTTCTCAGATCGTCTCCGCCTGTGTCGGCACCAAATTTTCG
AGTCGCTGGGGCCCCTTCATGGTGGATCTGGCGGTGGACAGTGTGTTGAA
GGTTGTGCGgcaggtcgggggggagggcggggcggagggcggttACAAGG
AATGCGACGTCAAGCGCTACGTGCGGGTGGAGAAGATTCCCGGAGGCGAG
TTGGGAGATTCGAAAGTCATCGACGGCGTCATGTTCAACAAAGACGTGAC
GCACTCGAAGATGCGGCGACGCATCGAGAAGCCGCGTATCCTCCTCTTGG
ACTGCCCCTTGGAGTACAAGAAGGGCGAGAGTCAGACCAACGTGGAGgtg
aagcaagaggaagactGGAACACCTTGTtgcggatggaggaagaattCAT
CGAGAAGATGTGCGCGGAAATCGTGGCCTTTCGCCCCGACATTGTGATCA
CGGAGAAAGGCGTGAGTGACTTGGCCCAGCACTACCTGTTGAAAGCCGGG
GTCACGGCCTTCCGCCGGGTGCGGAAGAGCGACAACAACCGGATTGCGCG
GGCCGTGGGCGCCGTGATTGTGAGTCGCCCCGACGAAATCCAGGAGGGGG
ACGTCGGGACGGGCTGTGGCCTCTTTGAGGTACGGAAAATCGGTGACGAA
TACTTCGCCTTTTTAGAGCAATGCGAGCAGCCCCAGGCCTGCACCGTGCT
CCTCCGGGGGGGCAGCAAGGACGTGTTGAACGAGGTGGAACGGAATTTGC
AGGACGCCTTGCAGGTGGTGAGGAATTTGGTTTTCGAGAGCAAGCTTttg
ccggggggaggggcgacagAGATGGCGGTGGGGCAGGCCCTGGCTCGGGC
GTcgacggaggtggagggcgtgcaaCAGTGGCCCTACAAGGCGGtcgggg
aggccttggaggtgaTCCCTCGGACCCTGGCTCAGAATTGTGGGACGAAC
GTTTTGCGGATCATGACGCAATTGCGGGCCAAGCACGCGCAGGGCCCGAC
CACCTGGGGCATCgacggggagaaaggtaTTTTGGTGCCGATGGAGACGT
TGGGCGTGTGGGAGCCTTACGCAGTCAAAGTGCAGACGATCAAgacggcg
gtggaggcggcgtgCATGCTGCTGCGGATCGACGACGTGGTGAGcgggat
gaagaagaagaagtgaATGATGAATGCTCCGGTCATGGTATTAAATGCCA
ACACCAAACGAGAAACCGGTCGGACCGCTCAGCTGGGAAATATCGCAGCT
GCTAAAGCTGTATCGGATATTGTTAGGACAACACTTGGTCCACGCGCCAT
GTTGAAAATGCTTTTGGATCCGATGGGCGGGATTGTGATCACGAACGACG
GGCATTGCATATTAAGGGAAGTGGACGTTTCCCACCCTGCTGCCAAGAGC
ATGATTGAGCTGAGCCGAGcccaggacgaggaagttGGGGACGGAACGAC
CAGTGTCATCATTTTGGCAGGTGAAATGCTCGCGCAAGCAGAGCCGTTCC
TTCACCGGAACATACACCCGACGCAAATCGTGGCAGGCTACAGCAAAGCG
CTCCAAGAAGCACTCAAAGTGTGCAACGCGCTGGCCAAACCCATCGATGT
CAATGATAAGCAAGCCCTTTCTCAGATCGTCTCCGCCTGTGTCGGCACCA
AATTTTCGAGTCGCTGGGGCCCCTTCATGGTGGATCTGGCGGTGGACAGT
GTGTTGAAGGTTGTGCGgcaggtcgggggggagggcggggcggagggcgg
ttACAAGGAATGCGACGTCAAGCGCTACGTGCGGGTGGAGAAGATTCCCG
GAGGCGAGTTGGGAGATTCGAAAGTCATCGACGGCGTCATGTTCAACAAA
GACGTGACGCACTCGAAGATGCGGCGACGCATCGAGAAGCCGCGTATCCT
CCTCTTGGACTGCCCCTTGGAGTACAAGAAGGGCGAGAGTCAGACCAACG
TGGAGgtgaagcaagaggaagactGGAACACCTTGTtgcggatggaggaa
gaattCATCGAGAAGATGTGCGCGGAAATCGTGGCCTTTCGCCCCGACAT
TGTGATCACGGAGAAAGGCGTGAGTGACTTGGCCCAGCACTACCTGTTGA
AAGCCGGGGTCACGGCCTTCCGCCGGGTGCGGAAGAGCGACAACAACCGG
ATTGCGCGGGCCGTGGGCGCCGTGATTGTGAGTCGCCCCGACGAAATCCA
GGAGGGGGACGTCGGGACGGGCTGTGGCCTCTTTGAGGTACGGAAAATCG
GTGACGAATACTTCGCCTTTTTAGAGCAATGCGAGCAGCCCCAGGCCTGC
ACCGTGCTCCTCCGGGGGGGCAGCAAGGACGTGTTGAACGAGGTGGAACG
GAATTTGCAGGACGCCTTGCAGGTGGTGAGGAATTTGGTTTTCGAGAGCA
AGCTTttgccggggggaggggcgacagAGATGGCGGTGGGGCAGGCCCTG
GCTCGGGCGTcgacggaggtggagggcgtgcaaCAGTGGCCCTACAAGGC
GGtcggggaggccttggaggtgaTCCCTCGGACCCTGGCTCAGAATTGTG
GGACGAACGTTTTGCGGATCATGACGCAATTGCGGGCCAAGCACGCGCAG
GGCCCGACCACCTGGGGCATCgacggggagaaaggtaTTTTGGTGCCGAT
GGAGACGTTGGGCGTGTGGGAGCCTTACGCAGTCAAAGTGCAGACGATCA
AgacggcggtggaggcggcgtgCATGCTGCTGCGGATCGACGACGTGGTG
AGcgggatgaagaagaagaagtga

Synonyms

Publications