EWM24729.1, cds5943 (CDS) Nannochloropsis gaditana

Overview
NameEWM24729.1
Unique Namecds5943
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:204075..204102 +
Alignment locationCM002467.1:204327..204602 +
Alignment locationCM002467.1:204741..206044 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24729.1
Productt-complex protein 1 subunit gamma
Orig transcript idgnl|cribi|Naga_100459g4.449.mrna
GeneCCT3
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:204075..204102 +
CM002467.1supercontigCM002467.1:204327..204602 +
CM002467.1supercontigCM002467.1:204741..206044 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051082unfolded protein binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR002194Chaperonin_TCP-1_CS
IPR027413GROEL-like_equatorial
IPR012719Chap_CCT_gamma
IPR027410TCP-1-like_intermed
IPR027409GroEL-like_apical_dom
IPR002423Cpn60/TCP-1
IPR017998Chaperone_TCP-1
Homology
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|585106265|gb|EWM24729.1| (t-complex protein 1 subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 1097.03 bits (2836), Expect = 0.000e+0
Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK
Sbjct:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|299473696|emb|CBN78089.1| (T-complex protein 1, gamma subunit [Ectocarpus siliculosus])

HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 401/532 (75.38%), Postives = 455/532 (85.53%), Query Frame = 0 
Query:    2 MNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHA-QGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMK 532
            M+APVMVL  NTKRETGR AQLGNI AAKAV+DI+RTTLGPR+MLKMLLDPMGGIVITNDG+CILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIIL GEML+ AEP L R +HPTQIV GY++ALQ AL  C+ALA+ IDV++   L ++V A VGTKFS RWG  +V +A+D+V +V   V G         E DVKRY RVEKIPGGE+ D  V+DGVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVEV +EEDWNTLLRMEEE+IE +CA+IVAF PDIVITEKGVSDLAQHYL+KA +TAFRR+RK+DNNRIARAVGA +VSRPDEIQE D+GTGCGLFEVRKIGDEYF FLE C+  +ACTVLLRGGSKDVLNEVERNL DA+QVVRN+VFE +LLPGGGATEMAV QAL++ + EVEGVQQW +KA   ALEVIPRTLAQNCG NV+R++TQLRAKHA +   TWGIDG  G++  M  LG+WEP+ VK QT KTAVEAACM+LRIDD+VSG+K
Sbjct:    1 MSAPVMVLPVNTKRETGRAAQLGNITAAKAVADIIRTTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILTGEMLSVAEPILTRGVHPTQIVMGYARALQTALDACDALAETIDVDNGPQLKKLVDAAVGTKFSHRWGDKLVSMAIDAVKRVRTVVDGR-------VEVDVKRYARVEKIPGGEMEDCTVLDGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADITAFRRLRKTDNNRIARAVGATVVSRPDEIQESDIGTGCGLFEVRKIGDEYFTFLEGCKDAKACTVLLRGGSKDVLNEVERNLADAMQVVRNVVFEPRLLPGGGATEMAVSQALSKKAQEVEGVQQWAFKAAASALEVIPRTLAQNCGANVVRVLTQLRAKHANEAKCTWGIDGTTGVMTDMRDLGIWEPFTVKTQTYKTAVEAACMILRIDDIVSGIK 525
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|695415287|ref|XP_009526514.1| (hypothetical protein PHYSODRAFT_346179 [Phytophthora sojae] >gi|348677639|gb|EGZ17456.1| hypothetical protein PHYSODRAFT_346179 [Phytophthora sojae])

HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0
Identity = 379/535 (70.84%), Postives = 452/535 (84.49%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NTKRETGRTAQLGNI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIILAGE+L  AEPFL   +HPT I+ G+++AL  ++++   LA+ ID+++K+ +  +V + +GTKFS R G  + DLA+D+VL VVR          G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEE+IE +CA+IVA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C+ P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + + E+EGV+Q+P++AVGEALEVIPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G + P E LGVWEP+ VK Q+IKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLNTNTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVVAEPFLSHQVHPTVIIRGFNRALNASIEIAKTLARTIDIDNKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRTTAS------GRKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEYIENLCAQIVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQEADIGTKCGLFEVRKLGDEYFAFFEECKDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHELKKRADEIEGVEQFPFRAVGEALEVIPRTLLQNCGADVVRVMTSLRAKQAETEESYGVDGVTGKVTPSEELGVWEPFQVKTQSIKTAVEAACMLLRIDDIVSGLAKKK 529
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|301095842|ref|XP_002897020.1| (T-complex protein 1 subunit gamma [Phytophthora infestans T30-4] >gi|262108449|gb|EEY66501.1| T-complex protein 1 subunit gamma [Phytophthora infestans T30-4])

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 379/535 (70.84%), Postives = 452/535 (84.49%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NTKRETGRTAQL NI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIILAGE+L  AEPFL   +HPT I+ G+++AL  +L++   LA+PID+ +K+ +  +V + +GTKFS R G  + DLA+D+VL VVR       +  G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEE+IE +CA++VA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C+ P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + + E+EGV+Q+P++AVGEALEVIPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G + P E LGVWEP+ VK Q+IKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLNTNTKRETGRTAQLSNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVIAEPFLGHQVHPTVIIRGFNRALNASLEIAKKLARPIDIENKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRT------SASGQKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEYIENLCAQVVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQESDIGTKCGLFEVRKLGDEYFAFFEECKDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHELKKRADEIEGVEQFPFRAVGEALEVIPRTLLQNCGADVVRVMTSLRAKQAETDESYGVDGVTGKVTPSEQLGVWEPFQVKTQSIKTAVEAACMLLRIDDIVSGLAKKK 529
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|567960030|gb|ETK85594.1| (T-complex protein 1 subunit gamma, variant, partial [Phytophthora parasitica] >gi|567988750|gb|ETL39023.1| T-complex protein 1 subunit gamma, variant, partial [Phytophthora parasitica] >gi|568017968|gb|ETL92145.1| T-complex protein 1 subunit gamma, variant, partial [Phytophthora parasitica] >gi|568048389|gb|ETM45443.1| T-complex protein 1 subunit gamma, variant, partial [Phytophthora parasitica])

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 380/535 (71.03%), Postives = 452/535 (84.49%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NTKRETGRTAQLGNI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIILAGE+L  AEPFL   +HPT I+ G+++AL  +L++   LA PID+ +K+ +  +V + +GTKFS R G  + DLA+D+VL VVR       +  G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEE+IE +CA++VA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C+ P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + + E+EGV+Q+P++AVGEALEVIPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G + P E LGVWEP+ VK Q+IKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:   23 MMQAPVMVLNTNTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVVAEPFLGHQVHPTVIIRGFNRALNASLEIAKKLACPIDIENKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRT------SASGQKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEYIENLCAQVVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQESDIGTKCGLFEVRKLGDEYFAFFEECKDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHELKKRADEIEGVEQFPFRAVGEALEVIPRTLLQNCGADVVRVMTSLRAKQAETDESYGVDGVTGKVTPSEQLGVWEPFQVKTQSIKTAVEAACMLLRIDDIVSGLAKKK 551
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|675167959|ref|XP_008892864.1| (T-complex protein 1 subunit gamma [Phytophthora parasitica INRA-310] >gi|566022723|gb|ETI45634.1| T-complex protein 1 subunit gamma [Phytophthora parasitica P1569] >gi|568106399|gb|ETN21029.1| T-complex protein 1 subunit gamma [Phytophthora parasitica INRA-310] >gi|570326329|gb|ETO74277.1| T-complex protein 1 subunit gamma [Phytophthora parasitica P1976] >gi|570950185|gb|ETP15442.1| T-complex protein 1 subunit gamma [Phytophthora parasitica CJ01A1] >gi|570983746|gb|ETP43518.1| T-complex protein 1 subunit gamma [Phytophthora parasitica P10297] >gi|970664950|gb|KUG01735.1| T-complex protein 1 subunit gamma [Phytophthora nicotianae])

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 380/535 (71.03%), Postives = 452/535 (84.49%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NTKRETGRTAQLGNI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIILAGE+L  AEPFL   +HPT I+ G+++AL  +L++   LA PID+ +K+ +  +V + +GTKFS R G  + DLA+D+VL VVR       +  G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEE+IE +CA++VA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C+ P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + + E+EGV+Q+P++AVGEALEVIPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G + P E LGVWEP+ VK Q+IKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLNTNTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVVAEPFLGHQVHPTVIIRGFNRALNASLEIAKKLACPIDIENKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRT------SASGQKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEYIENLCAQVVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQESDIGTKCGLFEVRKLGDEYFAFFEECKDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHELKKRADEIEGVEQFPFRAVGEALEVIPRTLLQNCGADVVRVMTSLRAKQAETDESYGVDGVTGKVTPSEQLGVWEPFQVKTQSIKTAVEAACMLLRIDDIVSGLAKKK 529
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|1173931482|gb|OQR83875.1| (T-complex protein 1 subunit gamma [Achlya hypogyna])

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 388/535 (72.52%), Postives = 446/535 (83.36%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NT+RETGR+AQLGNI AAKAVS+IVRTTLGPR+MLKMLLDPMGGIV+T+DG+ ILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIIL+GEML  AEPFL R +HPT I+ GY +ALQ  L+ C  +AK IDV+DK A+  ++ + VGTK+S R G  + DLA+D+VL V+R          G KE DVKRY +VEKIPGGEL +S+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  E+DWNTLLRMEEE+IE++CA IVA +PDIVITEKGVSDLAQHY +KA +T FRR+RK+DNNR+ARA GA IVSR +EIQE D+GT CGLFEVRKI DEYFAF E C+ P ACT+LLRGGSKDVLNEVERNLQDALQV RN+VFE  LLPGGGATEM +   L + + EVEGV+QWP+KAV EALEVIPRTL QNCG +V+R+MT LRAK A+    + +DG KG +V  E LGVWEPY VK QTIKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLNTNTQRETGRSAQLGNIQAAKAVSEIVRTTLGPRSMLKMLLDPMGGIVMTSDGNAILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGEMLVVAEPFLTRQVHPTVIIRGYHQALQMCLETCKRMAKQIDVHDKIAMRNLILSSVGTKYSPRVGNIVSDLALDAVLTVMRT-----NPHTGKKEVDVKRYAKVEKIPGGELEESRVLSGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNEQDWNTLLRMEEEYIEQLCAHIVAVKPDIVITEKGVSDLAQHYFVKANITCFRRLRKTDNNRVARATGATIVSRAEEIQESDIGTKCGLFEVRKIADEYFAFFEDCKDPGACTILLRGGSKDVLNEVERNLQDALQVARNVVFEPLLLPGGGATEMRLAHELRQRAHEVEGVEQWPFKAVAEALEVIPRTLLQNCGASVVRVMTALRAKVAEANGGYAVDGVKGAVVTSEELGVWEPYQVKTQTIKTAVEAACMLLRIDDIVSGLAKKK 530
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|1214705932|gb|OWZ17553.1| (T-complex protein 1 subunit gamma [Phytophthora megakarya])

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 377/535 (70.47%), Postives = 449/535 (83.93%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVLN NTKRETGRTAQLGNI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTTSVIILAGE+L  AEPFL   +HPT I+ G+++AL  ++++   LA+ ID+ +K+ +  +V + +GTKFS R G  + DLA+D+VL VVR          G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEE+IE +CA++VA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C  P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + + E+EGV+Q+P++AVGEALEVIPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G +   E LGVWEP+ VK Q+IKTAVEAACMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLNTNTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTSVIILAGELLVVAEPFLRHQVHPTVIIRGFNRALNASIEIAKQLARTIDIENKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVVRTTAS------GRKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEYIENLCAQVVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQEADIGTKCGLFEVRKLGDEYFAFFEECTDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHELKKRADEIEGVEQFPFRAVGEALEVIPRTLLQNCGADVVRVMTSLRAKQAETDESFGVDGVTGKVTVSEELGVWEPFQVKTQSIKTAVEAACMLLRIDDIVSGLAKKK 529
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|397579955|gb|EJK51400.1| (hypothetical protein THAOC_29426 [Thalassiosira oceanica])

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 382/550 (69.45%), Postives = 451/550 (82.00%), Query Frame = 0 
Query:    5 PVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQ------VGGEGGAEGGYK-ECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQG-------------PTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKK 534
            PVMVLN+ T+R  GR AQLGNIAAA+AV+DI+R+TLGPR+MLKMLLDPMGGIVITNDG+CILREVDVSHP AKSMIELSRAQDEEVGDGTTSVIILAGEML  AEPF   N+HPT IV GY+ ALQEAL +C  LA  +DV D + +  +V +C+GTKFSSRW   M+D+A+ +VL V R+      + G+G +    K E D+KRY +VEKIPGGE+ D  V+ GVMFNKDVTHSKMRRRIE PRILLLD PLEYKKGESQTNVE+  EEDWNTLL+MEEE++E MC EI+AF+PDIVITEKGVSDLAQHY  KA +TAFRR+RK+DNNR+ARA GA IVSR DEI+E D+GTGCGLFE+RKIG+EYFAF E+C++P+ACTV+LRGGSKDVLNE+ERNL DA+QVVRN+VF+++LLPGGGATEMAV   L RA  ++EGVQQ P+ AVGEA+EVIPRTLAQNCG +V+R +TQLRAKHA                  WGIDG  G LV M+  G+WEP++VK+QTIKTAVE+ACM+LRIDD+VSG KKK
Sbjct:   11 PVMVLNSKTQRTHGRQAQLGNIAAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIILAGEMLINAEPFARANVHPTVIVRGYNYALQEALSICEKLALTVDVKDTERMKDLVQSCIGTKFSSRWNDIMIDMALKAVLTVARETPMPSLLPGDGSSMYSQKMEVDIKRYAKVEKIPGGEISDCTVLSGVMFNKDVTHSKMRRRIENPRILLLDTPLEYKKGESQTNVEITDEEDWNTLLKMEEEYVENMCMEIIAFKPDIVITEKGVSDLAQHYFAKADITAFRRLRKTDNNRVARATGATIVSRTDEIRESDIGTGCGLFEMRKIGEEYFAFFEECKEPKACTVILRGGSKDVLNEIERNLTDAMQVVRNVVFDTRLLPGGGATEMAVSTGLRRAGLKLEGVQQGPFLAVGEAMEVIPRTLAQNCGVSVIRTVTQLRAKHAAAYEEAEQDGKDIFPKCNWGIDGTTGKLVDMDEFGIWEPFSVKIQTIKTAVESACMILRIDDIVSGSKKK 560
[Close]
BLAST of EWM24729.1 vs. NCBI_GenBank
Match: gi|953502161|emb|CEG36652.1| (t-complex protein 1 subunit gamma [Plasmopara halstedii])

HSP 1 Score: 801.586 bits (2069), Expect = 0.000e+0
Identity = 372/535 (69.53%), Postives = 451/535 (84.30%), Query Frame = 0 
Query:    1 MMNAPVMVLNANTKRETGRTAQLGNIAAAKAVSDIVRTTLGPRAMLKMLLDPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILAGEMLAQAEPFLHRNIHPTQIVAGYSKALQEALKVCNALAKPIDVNDKQALSQIVSACVGTKFSSRWGPFMVDLAVDSVLKVVRQVGGEGGAEGGYKECDVKRYVRVEKIPGGELGDSKVIDGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQTNVEVKQEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVITEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGAVIVSRPDEIQEGDVGTGCGLFEVRKIGDEYFAFLEQCEQPQACTVLLRGGSKDVLNEVERNLQDALQVVRNLVFESKLLPGGGATEMAVGQALARASTEVEGVQQWPYKAVGEALEVIPRTLAQNCGTNVLRIMTQLRAKHAQGPTTWGIDGEKGILVPMETLGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK 535
            MM APVMVL+ NTKRETGRTAQLGNI AAKAVSDIVRTTLGPR+MLKMLLDPMGGIV+TNDG+ ILREVDV+HPAAKSMIELSRAQDEEVGDGTT+VIIL GE+L  AEPFL+  +HPT I+ G+++AL  +L+    LA+PID+ +K+ +  +V + +GTKFS R G  + DLA+D+VL V+R       +  G KE DVKRY +VEKIPGGEL DS+V+ GVMFNKDVTHSKMRRRIE PR+LLLDCPLEYKKGESQTNVE+  ++DWNTLLR+EEEFIE +CA++VA +PD+VITEKGVSDLAQHY +KAG+TAFRR+RK+DNNR+ARA GA IVSR DEIQE D+GT CGLFEVRK+GDEYFAF E+C+ P AC++LLRGGSKDVLNE+ERNLQDA+QV RN+VFE  LLPGGGATEM +   L + +  +EG++Q+P++AVGEALE+IPRTL QNCG +V+R+MT LRAK A+   ++G+DG  G + P + LGVWEP+ VK Q+IKTAVEA+CMLLRIDD+VSG+ KKK
Sbjct:    1 MMQAPVMVLSTNTKRETGRTAQLGNIEAAKAVSDIVRTTLGPRSMLKMLLDPMGGIVMTNDGNAILREVDVAHPAAKSMIELSRAQDEEVGDGTTTVIILTGELLVVAEPFLNHQVHPTVIIRGFNRALNASLEFAKELARPIDIANKEDMRNLVQSSIGTKFSPRVGNLVSDLALDAVLTVMRT------SPSGQKEVDVKRYAKVEKIPGGELEDSRVLKGVMFNKDVTHSKMRRRIENPRVLLLDCPLEYKKGESQTNVELTNDQDWNTLLRLEEEFIENLCAQVVAMKPDVVITEKGVSDLAQHYFVKAGITAFRRLRKTDNNRVARATGATIVSRADEIQESDIGTKCGLFEVRKLGDEYFAFFEECKDPGACSILLRGGSKDVLNEIERNLQDAMQVARNVVFEPLLLPGGGATEMRLAHKLKQRADNIEGIEQFPFRAVGEALEIIPRTLLQNCGADVVRVMTALRAKQAETDESYGVDGVTGKVTPSQVLGVWEPFQVKTQSIKTAVEASCMLLRIDDIVSGLAKKK 529
The following BLAST results are available for this feature:
BLAST of EWM24729.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106265|gb|EWM24729.1|0.000e+0100.00t-complex protein 1 subunit gamma [Nannochloropsis... [more]
gi|299473696|emb|CBN78089.1|0.000e+075.38T-complex protein 1, gamma subunit [Ectocarpus sil... [more]
gi|695415287|ref|XP_009526514.1|0.000e+070.84hypothetical protein PHYSODRAFT_346179 [Phytophtho... [more]
gi|301095842|ref|XP_002897020.1|0.000e+070.84T-complex protein 1 subunit gamma [Phytophthora in... [more]
gi|567960030|gb|ETK85594.1|0.000e+071.03T-complex protein 1 subunit gamma, variant, partia... [more]
gi|675167959|ref|XP_008892864.1|0.000e+071.03T-complex protein 1 subunit gamma [Phytophthora pa... [more]
gi|1173931482|gb|OQR83875.1|0.000e+072.52T-complex protein 1 subunit gamma [Achlya hypogyna... [more]
gi|1214705932|gb|OWZ17553.1|0.000e+070.47T-complex protein 1 subunit gamma [Phytophthora me... [more]
gi|397579955|gb|EJK51400.1|0.000e+069.45hypothetical protein THAOC_29426 [Thalassiosira oc... [more]
gi|953502161|emb|CEG36652.1|0.000e+069.53t-complex protein 1 subunit gamma [Plasmopara hals... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5958rna5958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications