rna5950, rna5950 (mRNA) Nannochloropsis gaditana

Overview
Namerna5950
Unique Namerna5950
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1722
Alignment locationCM002467.1:187120..188142 -

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Properties
Property NameValue
ProductConserved hypothetical protein CHP02058
Orig transcript idgnl|cribi|Naga_100272g3.10158.mrna
Orig protein idgnl|cribi|Naga_100272g3.10158
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:187120..188142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100272g3gene5748Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5950rna5950-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24740.1cds5935Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5950 ID=rna5950|Name=rna5950|organism=Nannochloropsis gaditana|type=mRNA|length=1722bp
AGAACGTCAGTGGTGGGCCCTAGGCATACATGGCGTATATTTGCGAGGCC
GCATTTATACCTGATAGAATCCCGTCTGGTCATATCTGTCTTCTTTTCCC
TACGTCGTCCAATTTCACAAGATGATAACACGGGCCCCCGGGAATCACTT
GCATATTCCCCTTTCTTTTTGCATGAGGTGTATTTCCCCTAAGACTGTCC
GACCCCCTCGTATGTCGCCGTCCTCGCTTCATCTCCTTCACAGTTTCCGC
ATCAGAATGTAGCACGTAAGTTTTTTACACCGTAAAACTTTTTTTGACCG
TTTTCTCCACCGTCTTTTTTTGACGACAGGGGGGTTGGGTGCCGACAGAG
CCTTTCTTCCTCTTCCACACGTCGAGCTCTCCTTAACCTCCCTAGCGCAG
CAATATCTCCGTAAAAGCGCCATGGTCCTGTGCACGGGGTTTCTGAAGAT
GATTGGGACAGCCTCCGTCGCCTTGACTGGGAGCACAACGGGCTTGTCCA
GCCGAGGGCTCACCACCTTATCCTACGTACCGCCCTCAGCCTCTCCTACT
ATCATGGCCGATATCACGACAAACCCATCCACAAGCTCGACACCAGCGGC
GCCAAGCCCAGGGATCGCAGCCACGGGAACTGGTGCACGAAGAAGCCCGG
GAAAAGAGGCGATGCGAGTAAAGTCCCCTCTCATCTATTCCCACCCCATG
TCTAGCCTGGAGAACGCACCGCCCATCTATCTGAAGCTGGACGCATTGCA
ACCCTCTGGCTCGTTCAAAGACCGGGGTATGGCCACCTTGTGTTCCACGT
TGCAACGCCAGGGTGCCCGACGCCTGGTCTCTTCCTCGGGCGGCAACGCT
GGCCTCTCCGCCGCCCTGTGCGGCCGTATCTTGGGCATGCCAGTACAGGT
CATCGTCCCGTCCACGACGAAACCCTTGATGTTGGAGAAAATTCGGGCCC
AGGGGGCAAAAGTGGAGGTGTTTGGGAAAAATTGGAACGAAGCCGACGCC
CGTGCCCGGTGGGTGGTGGAGGAGGGAGGGAGGGAGGGAGGGCCCGAGGC
GGTGGCCTATATCCCTCCCTACGACCATCCCTTGTTGTGGGAGGGGCACA
GCACGCTGGTGGATGAATTGGTGGAGGGAGGAAGGGAGGGCGGGATGGAG
GAAGCGCCGGCGGCCATCGTGGCGAGCGTGGGGGGGGGGGGGTTGTTGTG
TGGGATTTACGAAGGGTTGAGTCGGTACGAAGGCCGGGCGGGCTGGGAGG
ACGTAGGGGTGGTGGGCGTGGAAACCGAGGGCGCCGCGTCCTTTGCGGCT
GGTCTGGCGGCGGGTGAGGTAGTGAGATTAACGGAAATTCAAACGGTGGC
CACGTCTCTGGGGGCGTTGGAAGTCACGCCTCGGGCATTGGAGTACGCGA
GAAGCGGAGGGCGGGCGGGAGGGCGGGACGGAGGGCAGGACAAAGGGCCA
CGCCTCACCCTCAGTGAGGTGGTAACGGATGCGGAGGCCGTGCAAGCCTG
TCGGGCTTTCCTCCGGGACCATCGGCTCTTGGTGGAGCCGGCGTGCGGTG
CGGCGTTGGCCCTCGTGTACTCTCCCCGGCTGCGGAAACGTTTGAAAGCC
TGGTCGGCGGCCAAGGGGGGAAGGCCGGTGGTGATCGTGGTGTGTGGGGG
GAGTGGGATCACCCCCGAAATATTGGTAGAAATGGAGAGAGGGTTGGGCG
TGGGGAGTTGAGGGAGGGAGGG
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protein sequence of rna5950

>rna5950-protein ID=rna5950-protein|Name=rna5950|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSK
ASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSL
PSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQS
GGMRASSGIALPAMGDRNDDWIVAIAAVSVGW
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mRNA from alignment at CM002467.1:187120..188142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5950 ID=rna5950|Name=rna5950|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp|location=Sequence derived from alignment at CM002467.1:187120..188142- (Nannochloropsis gaditana)
TGTCACAGATAAAAGCTGGCCGTTGGCGCCGATGCTAGCAAAGGGCTCCA
CAACGCTTTACATAGTAAGCTTTTTGGCAATCCTCCTCTGTCCTCACGCC
TTTTTTCGATCGACATTACATGCTACAAGAAATTCGCATCTCCCTGTGAC
AAGATCATTTACGATTATGGCATCTTCCAAAGCCTCCACATCCGATGTCA
CGGTATCTAGTGTCGAGGGCATGCAGCAATTGCTCTTCGTGCAGGTAAAC
AAGAGGATGTTTTATGCAAGGACTGATTTTTGTACCATAATTTTTTACCT
CACAGTTCTCATCCGTTATTGTCAGATGGGCTTTGGGTGCGATCAACATG
GGCAAGACGCCACCAAAGCGGCCGTCAAGGCCTGTCGCAACGCGATCGAG
TGGAATTCGCTTCCGTCGATAAACCAGATCGTCCCAGGAGGGTACGATGC
CATGAAAGTAAGTGGGACAGGGTCACCTAGACAACGATCCTATCCTACGG
TAATGTTTGATACCTCTCCATTATGTGAGGACAAACACTTAATCCCCTTT
GTTGTTCCAGCCCGAGTCGATTTGGCGGAAAACTTGCTATCAATGTGTTA
AGCTCTTGTTTTAACCTGTAGGTGCGTGTGCAGATAGCCGTGCCAGTGGA
TGCGTCAAACATCGACACAGAAGCCATCAAAAAAGCATTTCCATACGGTC
AGCTCTTACCCGTAGAGATCCAAAGCGGGGGAATGCGTGCGTCGAGTGGC
ATCGCCTTGCCGGCCATGGGCGACCGGAATGACGATTGGATCGTGGCGAT
TGCCGCAGTGTCCGTAGGATGGTGAGAGTTGACTAGTACGGCGTCCTCCT
GAGGAAGGCCAGTAAGGCACTTTTTGGAGGGTCATTGGGAGGTCCGACAA
GACCGAGGGAGAGAAGGGAGGTGCAGTCACAGGGGATGCTGTCAAAGAAG
GCAAGCACGGTGGATGTGAAGTAACAACTACATAATACGACCCTGTCGAT
GGACCGGATCGACGTTTTCTGAT
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Coding sequence (CDS) from alignment at CM002467.1:187120..188142-

>rna5950 ID=rna5950|Name=rna5950|organism=Nannochloropsis gaditana|type=CDS|length=1647bp|location=Sequence derived from alignment at CM002467.1:187120..188142- (Nannochloropsis gaditana)
GTGCGTGTGCAGATAGCCGTGCCAGTGGATGCGTCAAACATCGACACAGA
AGCCATCAAAAAAGCATTTCCATACGGTCAGCTCTTACCCGTAGAGATCC
AAAGCGGGGGAATGCGTGCGTCGAGTGGCATCGCCTTGCCGGCCATGGGC
GACCGGAATGACGATTGGATCGTGGCGATTGCCGCAGTGTCCGTAGGATG
GTGAATGGGCTTTGGGTGCGATCAACATGGGCAAGACGCCACCAAAGCGG
CCGTCAAGGCCTGTCGCAACGCGATCGAGTGGAATTCGCTTCCGTCGATA
AACCAGATCGTCCCAGGAGGGTACGATGCCATGAAAATGCTAGCAAAGGG
CTCCACAACGCTTTACATAGTAAGCTTTTTGGCAATCCTCCTCTGTCCTC
ACGCCTTTTTTCGATCGACATTACATGCTACAAGAAATTCGCATCTCCCT
GTGACAAGATCATTTACGATTATGGCATCTTCCAAAGCCTCCACATCCGA
TGTCACGGTATCTAGTGTCGAGGGCATGCAGCAATTGCTCTTCGTGCAGG
TGCGTGTGCAGATAGCCGTGCCAGTGGATGCGTCAAACATCGACACAGAA
GCCATCAAAAAAGCATTTCCATACGGTCAGCTCTTACCCGTAGAGATCCA
AAGCGGGGGAATGCGTGCGTCGAGTGGCATCGCCTTGCCGGCCATGGGCG
ACCGGAATGACGATTGGATCGTGGCGATTGCCGCAGTGTCCGTAGGATGG
TGAATGGGCTTTGGGTGCGATCAACATGGGCAAGACGCCACCAAAGCGGC
CGTCAAGGCCTGTCGCAACGCGATCGAGTGGAATTCGCTTCCGTCGATAA
ACCAGATCGTCCCAGGAGGGTACGATGCCATGAAAATGCTAGCAAAGGGC
TCCACAACGCTTTACATAGTAAGCTTTTTGGCAATCCTCCTCTGTCCTCA
CGCCTTTTTTCGATCGACATTACATGCTACAAGAAATTCGCATCTCCCTG
TGACAAGATCATTTACGATTATGGCATCTTCCAAAGCCTCCACATCCGAT
GTCACGGTATCTAGTGTCGAGGGCATGCAGCAATTGCTCTTCGTGCAGGT
GCGTGTGCAGATAGCCGTGCCAGTGGATGCGTCAAACATCGACACAGAAG
CCATCAAAAAAGCATTTCCATACGGTCAGCTCTTACCCGTAGAGATCCAA
AGCGGGGGAATGCGTGCGTCGAGTGGCATCGCCTTGCCGGCCATGGGCGA
CCGGAATGACGATTGGATCGTGGCGATTGCCGCAGTGTCCGTAGGATGGT
GAATGGGCTTTGGGTGCGATCAACATGGGCAAGACGCCACCAAAGCGGCC
GTCAAGGCCTGTCGCAACGCGATCGAGTGGAATTCGCTTCCGTCGATAAA
CCAGATCGTCCCAGGAGGGTACGATGCCATGAAAATGCTAGCAAAGGGCT
CCACAACGCTTTACATAGTAAGCTTTTTGGCAATCCTCCTCTGTCCTCAC
GCCTTTTTTCGATCGACATTACATGCTACAAGAAATTCGCATCTCCCTGT
GACAAGATCATTTACGATTATGGCATCTTCCAAAGCCTCCACATCCGATG
TCACGGTATCTAGTGTCGAGGGCATGCAGCAATTGCTCTTCGTGCAG
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Synonyms
Publications