EWM24740.1, cds5935 (CDS) Nannochloropsis gaditana

Overview
NameEWM24740.1
Unique Namecds5935
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:187899..188111 -
Alignment locationCM002467.1:187686..187817 -
Alignment locationCM002467.1:187318..187521 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24740.1
ProductConserved hypothetical protein CHP02058
Orig transcript idgnl|cribi|Naga_100272g3.10158.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:187899..188111 -
CM002467.1supercontigCM002467.1:187686..187817 -
CM002467.1supercontigCM002467.1:187318..187521 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR011719CHP02058
Homology
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|585106278|gb|EWM24740.1| (Conserved hypothetical protein CHP02058 [Nannochloropsis gaditana])

HSP 1 Score: 377.096 bits (967), Expect = 2.036e-132
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW
Sbjct:    1 MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|553180697|ref|XP_005853447.1| (hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526] >gi|422295614|gb|EKU22913.1| hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 351.673 bits (901), Expect = 1.312e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:   14 FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW
Sbjct:    1 FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 169          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|298712307|emb|CBJ33102.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 171.4 bits (433), Expect = 5.127e-52
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 0
Query:   64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            M  +LFV++GFG DQHGQ+ATKA V+ACRNAIE+NS+PSI  IVPGGY  MK+RVQ+AVPV    +D E IKK FPYG+LLP+E QSGGMRASSGIALP MGD NDD IVAI+ V+VG+
Sbjct:    1 MDHVLFVELGFGNDQHGQNATKACVRACRNAIEFNSIPSIKNIVPGGYAGMKLRVQLAVPVAEEEVDVEEIKKVFPYGELLPIEFQSGGMRASSGIALPEMGDTNDDMIVAISCVTVGY 119          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|255086071|ref|XP_002509002.1| (predicted protein [Micromonas commoda] >gi|226524280|gb|ACO70260.1| predicted protein [Micromonas commoda])

HSP 1 Score: 162.54 bits (410), Expect = 2.155e-47
Identity = 71/121 (58.68%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   63 GMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLL-PVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            GM  +LFV++G G DQHGQDATKAAV+ACRNAIE+NS+PSI QIVPGGYD MK+ +QI VP  A  +D E I++ FPYGQ+  P+E+  GG+ A SGI +P MGD++D++++A+AA+++G+
Sbjct:   88 GMNHVLFVEIGMGADQHGQDATKAAVRACRNAIEFNSIPSIRQIVPGGYDNMKLHIQIGVPKGAV-LDLEKIRRVFPYGQICEPIEVVEGGLMARSGIKIPEMGDKSDEFVIAVAAITIGY 207          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|308805146|ref|XP_003079885.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 159.844 bits (403), Expect = 4.219e-47
Identity = 72/127 (56.69%), Postives = 99/127 (77.95%), Query Frame = 0
Query:   56 VTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            V V + +GM+ +LF + GFG DQHGQDATKAA++ACRNAIE+NS+PSI +IVPGGY+ MK+ V + VP  AS +D +A++ +FPYG++LPV +  GG+R  S IA+P  GD NDD++V +A VSVG+
Sbjct:   20 VRVYAPDGMESVLFSECGFGADQHGQDATKAALRACRNAIEFNSIPSIREIVPGGYEGMKIHVHLGVPRGAS-VDRDAVRDSFPYGEVLPVVVDDGGLRTRSWIAIPEQGDANDDFLVCVAYVSVGY 145          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|693499562|emb|CEF98376.1| (Conserved hypothetical protein CHP02058 [Ostreococcus tauri] >gi|1199293356|gb|OUS48440.1| hypothetical protein BE221DRAFT_189740 [Ostreococcus tauri])

HSP 1 Score: 159.844 bits (403), Expect = 4.757e-47
Identity = 72/127 (56.69%), Postives = 99/127 (77.95%), Query Frame = 0
Query:   56 VTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            V V + +GM+ +LF + GFG DQHGQDATKAA++ACRNAIE+NS+PSI +IVPGGY+ MK+ V + VP  AS +D +A++ +FPYG++LPV +  GG+R  S IA+P  GD NDD++V +A VSVG+
Sbjct:   20 VRVYAPDGMESVLFSECGFGADQHGQDATKAALRACRNAIEFNSIPSIREIVPGGYEGMKIHVHLGVPRGAS-VDRDAVRDSFPYGEVLPVVVDDGGLRTRSWIAIPEQGDANDDFLVCVANVSVGY 145          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|303284939|ref|XP_003061760.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226457090|gb|EEH54390.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 154.836 bits (390), Expect = 1.629e-45
Identity = 69/120 (57.50%), Postives = 94/120 (78.33%), Query Frame = 0
Query:   64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLL-PVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            M Q+LFV+ G G DQHGQDATKAAV+ACRNAIE+NS+PSI  +VPGGYD MK+ + + VP     +D E++K  FPYG+++ PV + +GG+ A SGIA+  MGD NDD+++A+AAV+VG+
Sbjct:    1 MTQVLFVECGIGADQHGQDATKAAVRACRNAIEFNSIPSIRAVVPGGYDNMKLHIHLGVPA-GHEVDLESVKAVFPYGRIVEPVRVDAGGLLAKSGIAIAEMGDVNDDFVIAVAAVTVGY 119          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|145348051|ref|XP_001418471.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144578700|gb|ABO96764.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 149.443 bits (376), Expect = 2.333e-43
Identity = 65/121 (53.72%), Postives = 94/121 (77.69%), Query Frame = 0
Query:   62 EGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
             G ++ LF + GFG DQHGQDATKAAV+ACRNAIE+NS+PS+  +VPGGY  MK+ VQ+ VP +A  +D   +++ FPYG+++ V+I +GG+RA S I++PA GD NDD+++ +A V+VG+
Sbjct:    2 RGFERALFAECGFGADQHGQDATKAAVRACRNAIEFNSVPSVRAVVPGGYAKMKIHVQLGVPENA-KVDAGRVREVFPYGEVVDVQIDTGGLRARSWISIPAQGDANDDFLICVACVTVGY 121          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|676395191|ref|XP_009040873.1| (hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens] >gi|323448589|gb|EGB04486.1| hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens])

HSP 1 Score: 147.132 bits (370), Expect = 1.692e-42
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 0
Query:   66 QLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDA-SNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
            ++LFV+MG+GCDQHGQD TKAAV+A RNAIE+NS+PSI  +VPGGYD MK+ + +A+P      +D   ++  FPYG +  VE+Q GG    SGIALPAMGDRNDD IVAI +V+VG+
Sbjct:    1 RVLFVEMGWGCDQHGQDPTKAAVRAARNAIEFNSIPSIGAVVPGGYDNMKLGLDVALPRRCHGELDQTQLRAVFPYGNIAFVELQDGGALFRSGIALPAMGDRNDDAIVAIVSVTVGY 118          
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|612395350|ref|XP_007513195.1| (conserved hypothetical protein [Bathycoccus prasinos] >gi|412993220|emb|CCO16753.1| conserved hypothetical protein [Bathycoccus prasinos])

HSP 1 Score: 143.28 bits (360), Expect = 6.738e-41
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 0
Query:   64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGD-------RNDDWIVAIAAVSVGW 182
            M + LFV++G G DQHGQD TKAAV+AC++AI +NSLP+I  ++PGGY  MK+ V +A P+DA  +D + +KK FPYG  + VE+  GGM ASSGIA+ AMGD        NDD+IV  AAVSVG+
Sbjct:    1 MSKTLFVELGVGSDQHGQDGTKAAVRACKDAISFNSLPAIADLIPGGYGGMKLHVLVAAPIDAYPVDVDEVKKVFPYGS-VDVELVRGGMVASSGIAIEAMGDGFDADGRANDDFIVVNAAVSVGY 125          
The following BLAST results are available for this feature:
BLAST of EWM24740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106278|gb|EWM24740.1|2.036e-132100.00Conserved hypothetical protein CHP02058 [Nannochlo... [more]
gi|553180697|ref|XP_005853447.1|1.312e-122100.00hypothetical protein NGA_0179302, partial [Nannoch... [more]
gi|298712307|emb|CBJ33102.1|5.127e-5270.59conserved unknown protein [Ectocarpus siliculosus][more]
gi|255086071|ref|XP_002509002.1|2.155e-4758.68predicted protein [Micromonas commoda] >gi|2265242... [more]
gi|308805146|ref|XP_003079885.1|4.219e-4756.69unnamed protein product [Ostreococcus tauri][more]
gi|693499562|emb|CEF98376.1|4.757e-4756.69Conserved hypothetical protein CHP02058 [Ostreococ... [more]
gi|303284939|ref|XP_003061760.1|1.629e-4557.50predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|145348051|ref|XP_001418471.1|2.333e-4353.72predicted protein, partial [Ostreococcus lucimarin... [more]
gi|676395191|ref|XP_009040873.1|1.692e-4259.32hypothetical protein AURANDRAFT_6937, partial [Aur... [more]
gi|612395350|ref|XP_007513195.1|6.738e-4155.56conserved hypothetical protein [Bathycoccus prasin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5950rna5950Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications