EWM24740.1, cds5935 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|585106278|gb|EWM24740.1| (Conserved hypothetical protein CHP02058 [Nannochloropsis gaditana]) HSP 1 Score: 377.096 bits (967), Expect = 2.036e-132 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query: 1 MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW
Sbjct: 1 MLAKGSTTLYIVSFLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|553180697|ref|XP_005853447.1| (hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526] >gi|422295614|gb|EKU22913.1| hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 351.673 bits (901), Expect = 1.312e-122 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 14 FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW
Sbjct: 1 FLAILLCPHAFFRSTLHATRNSHLPVTRSFTIMASSKASTSDVTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 169
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|298712307|emb|CBJ33102.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 171.4 bits (433), Expect = 5.127e-52 Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 0
Query: 64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
M +LFV++GFG DQHGQ+ATKA V+ACRNAIE+NS+PSI IVPGGY MK+RVQ+AVPV +D E IKK FPYG+LLP+E QSGGMRASSGIALP MGD NDD IVAI+ V+VG+
Sbjct: 1 MDHVLFVELGFGNDQHGQNATKACVRACRNAIEFNSIPSIKNIVPGGYAGMKLRVQLAVPVAEEEVDVEEIKKVFPYGELLPIEFQSGGMRASSGIALPEMGDTNDDMIVAISCVTVGY 119
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|255086071|ref|XP_002509002.1| (predicted protein [Micromonas commoda] >gi|226524280|gb|ACO70260.1| predicted protein [Micromonas commoda]) HSP 1 Score: 162.54 bits (410), Expect = 2.155e-47 Identity = 71/121 (58.68%), Postives = 98/121 (80.99%), Query Frame = 0
Query: 63 GMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLL-PVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
GM +LFV++G G DQHGQDATKAAV+ACRNAIE+NS+PSI QIVPGGYD MK+ +QI VP A +D E I++ FPYGQ+ P+E+ GG+ A SGI +P MGD++D++++A+AA+++G+
Sbjct: 88 GMNHVLFVEIGMGADQHGQDATKAAVRACRNAIEFNSIPSIRQIVPGGYDNMKLHIQIGVPKGAV-LDLEKIRRVFPYGQICEPIEVVEGGLMARSGIKIPEMGDKSDEFVIAVAAITIGY 207
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|308805146|ref|XP_003079885.1| (unnamed protein product [Ostreococcus tauri]) HSP 1 Score: 159.844 bits (403), Expect = 4.219e-47 Identity = 72/127 (56.69%), Postives = 99/127 (77.95%), Query Frame = 0
Query: 56 VTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
V V + +GM+ +LF + GFG DQHGQDATKAA++ACRNAIE+NS+PSI +IVPGGY+ MK+ V + VP AS +D +A++ +FPYG++LPV + GG+R S IA+P GD NDD++V +A VSVG+
Sbjct: 20 VRVYAPDGMESVLFSECGFGADQHGQDATKAALRACRNAIEFNSIPSIREIVPGGYEGMKIHVHLGVPRGAS-VDRDAVRDSFPYGEVLPVVVDDGGLRTRSWIAIPEQGDANDDFLVCVAYVSVGY 145
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|693499562|emb|CEF98376.1| (Conserved hypothetical protein CHP02058 [Ostreococcus tauri] >gi|1199293356|gb|OUS48440.1| hypothetical protein BE221DRAFT_189740 [Ostreococcus tauri]) HSP 1 Score: 159.844 bits (403), Expect = 4.757e-47 Identity = 72/127 (56.69%), Postives = 99/127 (77.95%), Query Frame = 0
Query: 56 VTVSSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
V V + +GM+ +LF + GFG DQHGQDATKAA++ACRNAIE+NS+PSI +IVPGGY+ MK+ V + VP AS +D +A++ +FPYG++LPV + GG+R S IA+P GD NDD++V +A VSVG+
Sbjct: 20 VRVYAPDGMESVLFSECGFGADQHGQDATKAALRACRNAIEFNSIPSIREIVPGGYEGMKIHVHLGVPRGAS-VDRDAVRDSFPYGEVLPVVVDDGGLRTRSWIAIPEQGDANDDFLVCVANVSVGY 145
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|303284939|ref|XP_003061760.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226457090|gb|EEH54390.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 154.836 bits (390), Expect = 1.629e-45 Identity = 69/120 (57.50%), Postives = 94/120 (78.33%), Query Frame = 0
Query: 64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLL-PVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
M Q+LFV+ G G DQHGQDATKAAV+ACRNAIE+NS+PSI +VPGGYD MK+ + + VP +D E++K FPYG+++ PV + +GG+ A SGIA+ MGD NDD+++A+AAV+VG+
Sbjct: 1 MTQVLFVECGIGADQHGQDATKAAVRACRNAIEFNSIPSIRAVVPGGYDNMKLHIHLGVPA-GHEVDLESVKAVFPYGRIVEPVRVDAGGLLAKSGIAIAEMGDVNDDFVIAVAAVTVGY 119
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|145348051|ref|XP_001418471.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144578700|gb|ABO96764.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 149.443 bits (376), Expect = 2.333e-43 Identity = 65/121 (53.72%), Postives = 94/121 (77.69%), Query Frame = 0
Query: 62 EGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
G ++ LF + GFG DQHGQDATKAAV+ACRNAIE+NS+PS+ +VPGGY MK+ VQ+ VP +A +D +++ FPYG+++ V+I +GG+RA S I++PA GD NDD+++ +A V+VG+
Sbjct: 2 RGFERALFAECGFGADQHGQDATKAAVRACRNAIEFNSVPSVRAVVPGGYAKMKIHVQLGVPENA-KVDAGRVREVFPYGEVVDVQIDTGGLRARSWISIPAQGDANDDFLICVACVTVGY 121
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|676395191|ref|XP_009040873.1| (hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens] >gi|323448589|gb|EGB04486.1| hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens]) HSP 1 Score: 147.132 bits (370), Expect = 1.692e-42 Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 0
Query: 66 QLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDA-SNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182
++LFV+MG+GCDQHGQD TKAAV+A RNAIE+NS+PSI +VPGGYD MK+ + +A+P +D ++ FPYG + VE+Q GG SGIALPAMGDRNDD IVAI +V+VG+
Sbjct: 1 RVLFVEMGWGCDQHGQDPTKAAVRAARNAIEFNSIPSIGAVVPGGYDNMKLGLDVALPRRCHGELDQTQLRAVFPYGNIAFVELQDGGALFRSGIALPAMGDRNDDAIVAIVSVTVGY 118
BLAST of EWM24740.1 vs. NCBI_GenBank
Match: gi|612395350|ref|XP_007513195.1| (conserved hypothetical protein [Bathycoccus prasinos] >gi|412993220|emb|CCO16753.1| conserved hypothetical protein [Bathycoccus prasinos]) HSP 1 Score: 143.28 bits (360), Expect = 6.738e-41 Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 0
Query: 64 MQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGD-------RNDDWIVAIAAVSVGW 182
M + LFV++G G DQHGQD TKAAV+AC++AI +NSLP+I ++PGGY MK+ V +A P+DA +D + +KK FPYG + VE+ GGM ASSGIA+ AMGD NDD+IV AAVSVG+
Sbjct: 1 MSKTLFVELGVGSDQHGQDGTKAAVRACKDAISFNSLPAIADLIPGGYGGMKLHVLVAAPIDAYPVDVDEVKKVFPYGS-VDVELVRGGMVASSGIAIEAMGDGFDADGRANDDFIVVNAAVSVGY 125 The following BLAST results are available for this feature:
BLAST of EWM24740.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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