rna5947, rna5947 (mRNA) Nannochloropsis gaditana

Overview
Namerna5947
Unique Namerna5947
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length267
Alignment locationCM002467.1:177762..178904 -

Link to JBrowse

Properties
Property NameValue
Productnascent polypeptide-associated complex subunit alpha
Orig transcript idgnl|cribi|Naga_101149g1.10183.mrna
Orig protein idgnl|cribi|Naga_101149g1.10183
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:177762..178904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101149g1gene5745Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5947rna5947-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24741.1cds5932Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5947 ID=rna5947|Name=rna5947|organism=Nannochloropsis gaditana|type=mRNA|length=267bp
ATGCCCCCATACCCGTACCTGATGCATCCAAGCGCCACAATCAGCCCCAC
TCCACCATTACGGTCACATTTCTCCGTGGCATTCTTTTCCCTCACCGTTT
GGAGCGTTTGTTGCTGCGCTTCGACCTCCGCCTTTGTCCTGCGCCTCCCC
ACGGCAACCCCGTGTGCCAAACTAGACACGAAGCCTCTTTCAATCCATTT
GCCCTTTCGACACGCCACACTAGCAGCCAAGGTAGGTGATTTCGTTTGTA
TGACTCCTTTTCCTTGA
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protein sequence of rna5947

>rna5947-protein ID=rna5947-protein|Name=rna5947|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MLPKPHARTSKPMKQEAFQEFSNRTKMVEEHEPENPKVEEEGSEEEEEEE
ESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNI
LFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQ
GLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALK
KNDGDIVNAIMELTV
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mRNA from alignment at CM002467.1:177762..178904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5947 ID=rna5947|Name=rna5947|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at CM002467.1:177762..178904- (Nannochloropsis gaditana)
TCTGTCACAGTGTCCTTTTCACGCCGTACAATGCCACCGTACTTTCCTAC
GCGTGCCCTTCATTCATTTGTAGGTTTGTGTGCTCGCCATGCGTATGCAT
AGACGCACATGGATTGACCTCGATATCTGAGCTCGCTAGCCTCCCCTCCC
TTCCTTCTCTGGATACTCCCATTTTCTCTTATCTGTTACATGCTTCCAAA
ACCCCATGCACGCACTTCGAAACCCATGAAACAGGAAGCTTTTCAAGAAT
TCTCAAACAGGACCAAGATGGTGGAAGAGCACGAGCCTGAGAACCCGAAA
GTCGAGGAGGAAGGAAGCGAGGAGGAGGAGGAGGAGGAGGAGTCTGAGGA
GGAGGGGGAGGAGACAGGGGCGGGCCGGGGGGGGAAGCAAAGTCGCAGCG
AGAAAAAGAGCCGTAAGGCTGTCCAGAAATTGGTAAGTCCAGAGAAGGAA
GGGCTTGGTAAATGGGTAGGAGGGAAAACGGCTCATGATCGAGCGGGGGG
GAATGGGACGGAGGCTTCGGCAGGGCTGTGGATGGCACATGACCTGTGCC
GTGTGGCAGCATCTCGGCTCGCTCAGAGCGGTCGAAAATCCACCGCGTCC
TGCACTCACCTCCGTCATTCGGACGCGTTCTTTAACAGGGCATGAAGCCT
TTACCGGGCATCGCCCGGGTGACGGTGAAGAAGAGTAAGAACATTCTCTT
CGTGATCGGACAGCCGGACGTGTACAAATCCCCCTTTTCGGACACCTACA
TCGTCTTTGGCGAGGCTAAGTTGGAAGACTTGGGGGCCCAGGCTCAAAGC
GCGGCCGCGGCGCAATTTTCCCGGGAGCCCACCGGCATGCCTCAGGGGCT
GGGCGGAGGAGGGGGAGGAGGGGCGGGGGCGCCGGTGGTGGAGGAGGAGG
GGGAGGTGGATGAGACAGGGGTGGAGGCGAAGGATATTGAGCTGGTGATG
AGCCAGGCGGCGTGCTCCCGGGCGCGGGCGGTGGGCGCTCTGAAGAAAAA
CGACGGGGACATTGTGAACGCGATCATGGAGCTGACCGTGTAGGAGTGAG
GGAGGGAGGGTGTGCGGGATCGAGGGAGGGATCGAGGGAGGGATCGAGGG
AGGGCTAGGGGAAGCGAAGGAAACAAAAAGAAACTTTGAGGGA
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Coding sequence (CDS) from alignment at CM002467.1:177762..178904-

>rna5947 ID=rna5947|Name=rna5947|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002467.1:177762..178904- (Nannochloropsis gaditana)
GGCATGAAGCCTTTACCGGGCATCGCCCGGGTGACGGTGAAGAAGAGTAA
GAACATTCTCTTCGTGATCGGACAGCCGGACGTGTACAAATCCCCCTTTT
CGGACACCTACATCGTCTTTGGCGAGGCTAAGTTGGAAGACTTGGGGGCC
CAGGCTCAAAGCGCGGCCGCGGCGCAATTTTCCCGGGAGCCCACCGGCAT
GCCTCAGGGGCTGGGCGGAGGAGGGGGAGGAGGGGCGGGGGCGCCGGTGG
TGGAGGAGGAGGGGGAGGTGGATGAGACAGGGGTGGAGGCGAAGGATATT
GAGCTGGTGATGAGCCAGGCGGCGTGCTCCCGGGCGCGGGCGGTGGGCGC
TCTGAAGAAAAACGACGGGGACATTGTGAACGCGATCATGGAGCTGACCG
TGTAGATGCTTCCAAAACCCCATGCACGCACTTCGAAACCCATGAAACAG
GAAGCTTTTCAAGAATTCTCAAACAGGACCAAGATGGTGGAAGAGCACGA
GCCTGAGAACCCGAAAGTCGAGGAGGAAGGAAGCGAGGAGGAGGAGGAGG
AGGAGGAGTCTGAGGAGGAGGGGGAGGAGACAGGGGCGGGCCGGGGGGGG
AAGCAAAGTCGCAGCGAGAAAAAGAGCCGTAAGGCTGTCCAGAAATTGGG
CATGAAGCCTTTACCGGGCATCGCCCGGGTGACGGTGAAGAAGAGTAAGA
ACATTCTCTTCGTGATCGGACAGCCGGACGTGTACAAATCCCCCTTTTCG
GACACCTACATCGTCTTTGGCGAGGCTAAGTTGGAAGACTTGGGGGCCCA
GGCTCAAAGCGCGGCCGCGGCGCAATTTTCCCGGGAGCCCACCGGCATGC
CTCAGGGGCTGGGCGGAGGAGGGGGAGGAGGGGCGGGGGCGCCGGTGGTG
GAGGAGGAGGGGGAGGTGGATGAGACAGGGGTGGAGGCGAAGGATATTGA
GCTGGTGATGAGCCAGGCGGCGTGCTCCCGGGCGCGGGCGGTGGGCGCTC
TGAAGAAAAACGACGGGGACATTGTGAACGCGATCATGGAGCTGACCGTG
TAGATGCTTCCAAAACCCCATGCACGCACTTCGAAACCCATGAAACAGGA
AGCTTTTCAAGAATTCTCAAACAGGACCAAGATGGTGGAAGAGCACGAGC
CTGAGAACCCGAAAGTCGAGGAGGAAGGAAGCGAGGAGGAGGAGGAGGAG
GAGGAGTCTGAGGAGGAGGGGGAGGAGACAGGGGCGGGCCGGGGGGGGAA
GCAAAGTCGCAGCGAGAAAAAGAGCCGTAAGGCTGTCCAGAAATTG
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Synonyms
Publications