EWM24741.1, cds5932 (CDS) Nannochloropsis gaditana

Overview
NameEWM24741.1
Unique Namecds5932
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:178473..178715 -
Alignment locationCM002467.1:177862..178266 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24741.1
Productnascent polypeptide-associated complex subunit alpha
Orig transcript idgnl|cribi|Naga_101149g1.10183.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:178473..178715 -
CM002467.1supercontigCM002467.1:177862..178266 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR016641EGD2/NACA
IPR002715Nas_poly-pep-assoc_cplx_dom
Homology
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|585106281|gb|EWM24741.1| (nascent polypeptide-associated complex subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 426.402 bits (1095), Expect = 7.315e-151
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MLPKPHARTSKPMKQEAFQEFSNRTKMVEEHEPENPKVEEEGSEEEEEEEESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELTV 215
            MLPKPHARTSKPMKQEAFQEFSNRTKMVEEHEPENPKVEEEGSEEEEEEEESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELTV
Sbjct:    1 MLPKPHARTSKPMKQEAFQEFSNRTKMVEEHEPENPKVEEEGSEEEEEEEESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELTV 215          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|532021153|gb|AGT63357.1| (NAC transcription factor 1 [Salvia miltiorrhiza])

HSP 1 Score: 194.512 bits (493), Expect = 1.471e-59
Identity = 99/160 (61.88%), Postives = 124/160 (77.50%), Query Frame = 0
Query:   55 EGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            EG+E  +GR  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTY++FGEAK+EDL +Q Q+ AA QF + P      +           V++++ +VDETGVE KDIELVM+QA  SRARAV AL++ +GDIV+AIMELT
Sbjct:   43 EGQEDASGRS-KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQF-KAP-----NISQAAPKAEPTTVIQDDEDVDETGVEPKDIELVMTQAGVSRARAVKALREANGDIVSAIMELT 195          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|359481448|ref|XP_003632619.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Vitis vinifera])

HSP 1 Score: 194.126 bits (492), Expect = 2.970e-59
Identity = 100/160 (62.50%), Postives = 124/160 (77.50%), Query Frame = 0
Query:   55 EGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            EG++ G+GR  KQSRSEKKSRKA+ KLGMK +PG++RVT+KKSKNILFVI +PDV+KSP SDTY++FGEAK+EDL +Q Q+ AA QF + P   P            A VV+++ EVDETGVE KDI+LVM+QA  SR++AV ALK  DGDIV+AIMELT
Sbjct:   49 EGQDDGSGRS-KQSRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPTSDTYVIFGEAKIEDLSSQLQTQAAEQF-KAPNVHP-----AAAQPETAAVVQDDEEVDETGVEPKDIDLVMTQAGVSRSKAVKALKAADGDIVSAIMELT 201          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|568856861|ref|XP_006481991.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Citrus sinensis])

HSP 1 Score: 193.741 bits (491), Expect = 3.978e-59
Identity = 103/159 (64.78%), Postives = 123/159 (77.36%), Query Frame = 0
Query:   56 GEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            G+  G+GR  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTYIVFGEAK+EDL +Q Q+ AA QF + P   P   G        + +V+++ EVDETGVE KDIELVM+QA   R+RAV ALK  DGDIV+AIMELT
Sbjct:   50 GKGDGSGRS-KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQF-KVP---PPNTGNVASKPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|747064978|ref|XP_011079101.1| (nascent polypeptide-associated complex subunit alpha-like protein [Sesamum indicum])

HSP 1 Score: 192.2 bits (487), Expect = 1.218e-58
Identity = 101/160 (63.12%), Postives = 123/160 (76.88%), Query Frame = 0
Query:   55 EGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            EG+E  +GR  KQSRSEKKSRKA+ KLGMKP+ G++RVTVKKSKNILFVI +PDV+KSP SDTY++FGEAK+EDL +Q Q+ AA QF + P      +         AP+ +++ +VDETGVE KDIELVM+QA  SRARAV ALK  DGDIV+AIMELT
Sbjct:   44 EGQEDASGRS-KQSRSEKKSRKAMLKLGMKPILGVSRVTVKKSKNILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQF-KAP-----NVSNVVPKAEPAPLPQDDEDVDETGVEPKDIELVMTQAGVSRARAVKALKDADGDIVSAIMELT 196          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|763800885|gb|KJB67840.1| (hypothetical protein B456_010G214300 [Gossypium raimondii])

HSP 1 Score: 192.586 bits (488), Expect = 1.418e-58
Identity = 104/164 (63.41%), Postives = 125/164 (76.22%), Query Frame = 0
Query:   51 ESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            E   EGE  G GR  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTY++FGEAK+EDL +Q Q+ AA QF + P  + Q +       A    V+++ EVDETGVE KDIELVM+QA  SR++AV ALK  DGDIV+AIMELT
Sbjct:   50 EGHHEGEGDGTGRS-KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQTRAAEQF-KAP-DLSQVISKPESSTA----VQDDEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELT 206          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|567875727|ref|XP_006430453.1| (hypothetical protein CICLE_v10012803mg [Citrus clementina] >gi|557532510|gb|ESR43693.1| hypothetical protein CICLE_v10012803mg [Citrus clementina] >gi|641838438|gb|KDO57381.1| hypothetical protein CISIN_1g028762mg [Citrus sinensis])

HSP 1 Score: 191.815 bits (486), Expect = 2.299e-58
Identity = 102/159 (64.15%), Postives = 122/159 (76.73%), Query Frame = 0
Query:   56 GEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            G+  G+GR  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTYIVFGEAK+EDL +Q Q+ AA QF + P   P   G        + + +++ EVDETGVE KDIELVM+QA   R+RAV ALK  DGDIV+AIMELT
Sbjct:   50 GKGDGSGRS-KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQF-KVP---PPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|567875729|ref|XP_006430454.1| (hypothetical protein CICLE_v10012803mg [Citrus clementina] >gi|557532511|gb|ESR43694.1| hypothetical protein CICLE_v10012803mg [Citrus clementina])

HSP 1 Score: 190.274 bits (482), Expect = 4.758e-58
Identity = 102/159 (64.15%), Postives = 122/159 (76.73%), Query Frame = 0
Query:   56 GEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            G+  G+GR  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTYIVFGEAK+EDL +Q Q+ AA QF + P   P   G        + + +++ EVDETGVE KDIELVM+QA   R+RAV ALK  DGDIV+AIMELT
Sbjct:   32 GKGDGSGRS-KQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQF-KVP---PPNTGNVASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 185          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|1204926827|ref|XP_021296517.1| (nascent polypeptide-associated complex subunit alpha-like protein 1 [Herrania umbratica])

HSP 1 Score: 191.045 bits (484), Expect = 5.965e-58
Identity = 101/161 (62.73%), Postives = 121/161 (75.16%), Query Frame = 0
Query:   55 EGEETGAGRG-GKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            EG   G G G  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTY+VFGEAK+EDL +Q Q+ AA QF + P      L         + + +++ EVDETGVE KDIELVM+QA  SR++AV ALK  DGDIV+AIMELT
Sbjct:   53 EGHHDGDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQF-KAP-----DLSHVISKPESSTMAQDDEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELT 207          
BLAST of EWM24741.1 vs. NCBI_GenBank
Match: gi|1063527044|ref|XP_007010737.2| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Theobroma cacao])

HSP 1 Score: 190.66 bits (483), Expect = 7.024e-58
Identity = 101/161 (62.73%), Postives = 122/161 (75.78%), Query Frame = 0
Query:   55 EGEETGAGRG-GKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQGLGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELT 214
            EG + G G G  KQSRSEKKSRKA+ KLGMKP+PG++RVTVKKSKNILFVI +PDV+KSP SDTY+VFGEAK+EDL +Q Q+ AA QF + P      L         + + +++ EVDETGVE KDIELVM+QA  SR++AV ALK  DGDIV+AIMELT
Sbjct:   53 EGHQEGDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQF-KAP-----DLSHVISKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELT 207          
The following BLAST results are available for this feature:
BLAST of EWM24741.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106281|gb|EWM24741.1|7.315e-151100.00nascent polypeptide-associated complex subunit alp... [more]
gi|532021153|gb|AGT63357.1|1.471e-5961.88NAC transcription factor 1 [Salvia miltiorrhiza][more]
gi|359481448|ref|XP_003632619.1|2.970e-5962.50PREDICTED: nascent polypeptide-associated complex ... [more]
gi|568856861|ref|XP_006481991.1|3.978e-5964.78PREDICTED: nascent polypeptide-associated complex ... [more]
gi|747064978|ref|XP_011079101.1|1.218e-5863.13nascent polypeptide-associated complex subunit alp... [more]
gi|763800885|gb|KJB67840.1|1.418e-5863.41hypothetical protein B456_010G214300 [Gossypium ra... [more]
gi|567875727|ref|XP_006430453.1|2.299e-5864.15hypothetical protein CICLE_v10012803mg [Citrus cle... [more]
gi|567875729|ref|XP_006430454.1|4.758e-5864.15hypothetical protein CICLE_v10012803mg [Citrus cle... [more]
gi|1204926827|ref|XP_021296517.1|5.965e-5862.73nascent polypeptide-associated complex subunit alp... [more]
gi|1063527044|ref|XP_007010737.2|7.024e-5862.73PREDICTED: nascent polypeptide-associated complex ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5947rna5947Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications