rna5946, rna5946 (mRNA) Nannochloropsis gaditana

Overview
Namerna5946
Unique Namerna5946
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length934
Alignment locationCM002467.1:176302..176568 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101682g2.10367.mrna
Orig protein idgnl|cribi|Naga_101682g2.10367
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:176302..176568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101682g2gene5744Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5946rna5946-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24742.1cds5931Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5946 ID=rna5946|Name=rna5946|organism=Nannochloropsis gaditana|type=mRNA|length=934bp
TGCATCAAATTTCCCCTACCAACCCATGTCCTGCCTCCTTCTTACCCACA
CACACACAAGTCACAGCTAGACCACGTGCCATGCGGGAGTATGCCTGATG
GACTGCCAAAGGCACGAAGACTTGAGTCCTTCCAGCAACTTTCTAACCTC
CTCCTCCCAGCCCCCCTCCTCCCCCTCCTCCCCCTCAACACCGTCTTATA
TTCCTATTATAAGCCTTTCGCCCCTCCATGATCAGTCAGTGGAAGGCAAG
CAAGCTGTCGCGCAAGCCATTAGGAAAGCTTGTGAAGATATCGGTTTTTT
TCATCATCACCCACCACAATGTCGATCCCTCGACGATTTCCGAGGCTTCA
GCCGCTGCAACGGCGTTTTTTGACCTTCCAGCAGACGTGAAATCGTCAGT
CCGCATGGACGACGCCTACCCCTATGGTAAGGAAAAAGCCGGCCGCGGCA
ACGGGAGGACCTCAGGGACGTAGACACTCTCCACAAGGCCCTTCCTTGTA
GGACTTGCCTTTTATTCCTTGGCCTTCCCCCCCTTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCTACTCCGGCCTT
GGCGCGGAAGTCCTCGCCAAGAGTAAGGAGTACGAGCAATCCCAGGACCC
TGGTACCAGCACCAACCCTCCCTCCCCCCGCCCCCCCCCGACACCTCCCT
CACTTCCTCGCCCTCCGACCCCAAGGAATCTTTCTCCCTCGGCCCATATG
ACGGGGCTTCGGGCATGCCCCCTATCCGATGGCCCTCCCTCCCTCCCTCC
TTCGCCCCCGCCCTCACGGCTTATTACAAGGTACTACCATTTCCCTCCTC
TCCCCTTCGTTTTCCCCTTCCTTCACCCCTCCCCCCTCCCTCCCTTCCTT
GGATGCCTGTGGTAACCTCGCCCTCTCCCCCTCC
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protein sequence of rna5946

>rna5946-protein ID=rna5946-protein|Name=rna5946|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MPPYPYLMHPSATISPTPPLRSHFSVAFFSLTVWSVCCCASTSAFVLRLP
TATPCAKLDTKPLSIHLPFRHATLAAKVGDFVCMTPFP
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mRNA from alignment at CM002467.1:176302..176568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5946 ID=rna5946|Name=rna5946|organism=Nannochloropsis gaditana|type=mRNA|length=267bp|location=Sequence derived from alignment at CM002467.1:176302..176568+ (Nannochloropsis gaditana)
ATGCCCCCATACCCGTACCTGATGCATCCAAGCGCCACAATCAGCCCCAC
TCCACCATTACGGTCACATTTCTCCGTGGCATTCTTTTCCCTCACCGTTT
GGAGCGTTTGTTGCTGCGCTTCGACCTCCGCCTTTGTCCTGCGCCTCCCC
ACGGCAACCCCGTGTGCCAAACTAGACACGAAGCCTCTTTCAATCCATTT
GCCCTTTCGACACGCCACACTAGCAGCCAAGGTAGGTGATTTCGTTTGTA
TGACTCCTTTTCCTTGA
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Coding sequence (CDS) from alignment at CM002467.1:176302..176568+

>rna5946 ID=rna5946|Name=rna5946|organism=Nannochloropsis gaditana|type=CDS|length=267bp|location=Sequence derived from alignment at CM002467.1:176302..176568+ (Nannochloropsis gaditana)
ATGCCCCCATACCCGTACCTGATGCATCCAAGCGCCACAATCAGCCCCAC
TCCACCATTACGGTCACATTTCTCCGTGGCATTCTTTTCCCTCACCGTTT
GGAGCGTTTGTTGCTGCGCTTCGACCTCCGCCTTTGTCCTGCGCCTCCCC
ACGGCAACCCCGTGTGCCAAACTAGACACGAAGCCTCTTTCAATCCATTT
GCCCTTTCGACACGCCACACTAGCAGCCAAGGTAGGTGATTTCGTTTGTA
TGACTCCTTTTCCTTGA
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Synonyms
Publications