rna5945, rna5945 (mRNA) Nannochloropsis gaditana

Overview
Namerna5945
Unique Namerna5945
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1139
Alignment locationCM002467.1:174992..176021 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101682g1.10368.mrna
Orig protein idgnl|cribi|Naga_101682g1.10368
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:174992..176021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101682g1gene5743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5945rna5945-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24743.1cds5930Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5945 ID=rna5945|Name=rna5945|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp
TCCTCCCTCCCCTTCGACCCCCTCCTCCATCGCCCTCCCTCCGTCGTTGC
CGCCGACGAACGCGCCGCCGCCAAAGCCCTGCCTCCTCCTTTCCGTCCCT
GGAGGGAGGGTGAAGGCGCCGTCCTCCTGATCCCCCTACGGTGCGTGCGC
TTCCATGTGGGGAGGTGGCTCGGGGTGTATGTAGGTCTATGGATGTGCGT
ATCCGGGTTTGGTCGGACGTTCCCTCCCTGCAAGCACGGTCATTGCCTTC
CGCCGACTGAACCGTGCCCTCCCTCCCTCCCTTCCTCGGTCCCTTCCTCC
CTCTCCCTCCCTCTCTCCCTCTGTCCCTACCTCCTTCCCTCCCTCAGCCT
AGGTCTAGCCTCCCTCAACCCTGACTATATTCCTGGCCTTCTTGCCTCCC
TCCAAATTCCTCACTCCCTCGGGTTCGTAGGGGGTAGACCCCATCATGCC
ATTTACTTCGTAGGCGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GGCGGTGGTCGGTCTGGACCCGCACACGGTGCAAGTGGCGCCAGGGCCGC
AAGGAGACGGGGACCAAGGGGGACAAGGAGGGAGGGAGGGAGGGAAGGAG
GGAGGGGGGGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGCGAAG
GTACCGACCGACCGACGAACACCTTCGTTCCGTGCAATGCCGGACACCGG
CGATGATGCTCGCCAAAGACCTGGATCCTTCCTTGGCCTTGGGTTTCTAT
CTGCGAAATGAAGTGGATTTCCAGCTTTTTATTCAACATGTCCATGCCCT
GAAAGACACTTTGCAACGGCATCGTCTACCCGTCCCGTTTTCAGTGGAAC
AAGCGCCCCCAGAGTATGAAGGCGCCATGATGCAGAGCTTGGTCGAAGAG
GAAGAACATCGAGTGGAGGAGGAGGAGGAGGAGGAAGAGGAAGACCTTGA
GGATGATTATGTTGTAATATGACGGCGGAATGAACGTGGAAGGAAAGAGC
ACGTCTGGTGGATCCCAGGGGTTCACGATAGGCAGGATGAAAGGGGTGCG
CGAACGAGAAGGAAATTTGTATAGCATGTCGAAACTAAGACAAGGCAATG
TAGAACGTCCTCACACCAGGAAAAATTAGTGTACTTATT
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protein sequence of rna5945

>rna5945-protein ID=rna5945-protein|Name=rna5945|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MDCQRHEDLSPSSNFLTSSSQPPSSPSSPSTPSYIPIISLSPLHDQSVEG
KQAVAQAIRKACEDIGFFHHHPPQCRSLDDFRGFSRCNGVF
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mRNA from alignment at CM002467.1:174992..176021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5945 ID=rna5945|Name=rna5945|organism=Nannochloropsis gaditana|type=mRNA|length=1030bp|location=Sequence derived from alignment at CM002467.1:174992..176021- (Nannochloropsis gaditana)
TGCATCAAATTTCCCCTACCAACCCATGTCCTGCCTCCTTCTTACCCACA
CACACACAAGTCACAGCTAGACCACGTGCCATGCGGGAGTATGCCTGATG
GACTGCCAAAGGCACGAAGACTTGAGTCCTTCCAGCAACTTTCTAACCTC
CTCCTCCCAGCCCCCCTCCTCCCCCTCCTCCCCCTCAACACCGTCTTATA
TTCCTATTATAAGCCTTTCGCCCCTCCATGATCAGTCAGTGGAAGGCAAG
CAAGCTGTCGCGCAAGCCATTAGGAAGTGCGTCCGCCCCCCTCCCTTCCC
CTCCGTCCCCCTTCCCGCCTCATCCCTCCCTTCCTTCATCCCCTCACTCC
TTTTCCCCTCTCCTCTCTTCAGAGCTTGTGAAGATATCGGTTTTTTTCAT
CATCACCCACCACAATGTCGATCCCTCGACGATTTCCGAGGCTTCAGCCG
CTGCAACGGCGTTTTTTGACCTTCCAGCAGACGTGAAATCGTCAGTCCGC
ATGGACGACGCCTACCCCTATGGTAAGGAAAAAGCCGGCCGCGGCAACGG
GAGGACCTCAGGGACGTAGACACTCTCCACAAGGCCCTTCCTTGTAGGAC
TTGCCTTTTATTCCTTGGCCTTCCCCCCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCTACTCCGGCCTTGGCG
CGGAAGTCCTCGCCAAGAGTAAGGAGTACGAGCAATCCCAGGACCCTGGT
ACCAGCACCAACCCTCCCTCCCCCCGCCCCCCCCCGACACCTCCCTCACT
TCCTCGCCCTCCGACCCCAAGGAATCTTTCTCCCTCGGCCCATATGACGG
GGCTTCGGGCATGCCCCCTATCCGATGGCCCTCCCTCCCTCCCTCCTTCG
CCCCCGCCCTCACGGCTTATTACAAGGTACTACCATTTCCCTCCTCTCCC
CTTCGTTTTCCCCTTCCTTCACCCCTCCCCCCTCCCTCCCTTCCTTGGAT
GCCTGTGGTAACCTCGCCCTCTCCCCCTCC
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Coding sequence (CDS) from alignment at CM002467.1:174992..176021-

>rna5945 ID=rna5945|Name=rna5945|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002467.1:174992..176021- (Nannochloropsis gaditana)
AGCTTGTGAAGATATCGGTTTTTTTCATCATCACCCACCACAATGTCGAT
CCCTCGACGATTTCCGAGGCTTCAGCCGCTGCAACGGCGTTTTTTGAATG
GACTGCCAAAGGCACGAAGACTTGAGTCCTTCCAGCAACTTTCTAACCTC
CTCCTCCCAGCCCCCCTCCTCCCCCTCCTCCCCCTCAACACCGTCTTATA
TTCCTATTATAAGCCTTTCGCCCCTCCATGATCAGTCAGTGGAAGGCAAG
CAAGCTGTCGCGCAAGCCATTAGGAAAGCTTGTGAAGATATCGGTTTTTT
TCATCATCACCCACCACAATGTCGATCCCTCGACGATTTCCGAGGCTTCA
GCCGCTGCAACGGCGTTTTTTGAATGGACTGCCAAAGGCACGAAGACTTG
AGTCCTTCCAGCAACTTTCTAACCTCCTCCTCCCAGCCCCCCTCCTCCCC
CTCCTCCCCCTCAACACCGTCTTATATTCCTATTATAAGCCTTTCGCCCC
TCCATGATCAGTCAGTGGAAGGCAAGCAAGCTGTCGCGCAAGCCATTAGG
AA
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Synonyms
Publications