EWM24743.1, cds5930 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24743.1
Unique Name	cds5930
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002467.1:175746..175924 -
Alignment location	CM002467.1:175553..175649 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24743.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101682g1.10368.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:175746..175924 -
CM002467.1	supercontig	CM002467.1:175553..175649 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR027443	IPNS-like
IPR026992	DIOX_N

Homology

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BLAST of EWM24743.1 vs. NCBI_GenBank
Match: gi|585106285|gb|EWM24743.1| (hypothetical protein Naga_101682g1 [Nannochloropsis gaditana])

HSP 1 Score: 185.267 bits (469), Expect = 1.901e-59
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query:    1 MDCQRHEDLSPSSNFLTSSSQPPSSPSSPSTPSYIPIISLSPLHDQSVEGKQAVAQAIRKACEDIGFFHHHPPQCRSLDDFRGFSRCNGVF 91
            MDCQRHEDLSPSSNFLTSSSQPPSSPSSPSTPSYIPIISLSPLHDQSVEGKQAVAQAIRKACEDIGFFHHHPPQCRSLDDFRGFSRCNGVF
Sbjct:    1 MDCQRHEDLSPSSNFLTSSSQPPSSPSSPSTPSYIPIISLSPLHDQSVEGKQAVAQAIRKACEDIGFFHHHPPQCRSLDDFRGFSRCNGVF 91

The following BLAST results are available for this feature:

BLAST of EWM24743.1 vs. NCBI_GenBank

BLAST of EWM24743.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106285\|gb\|EWM24743.1\|	1.901e-59	100.00	hypothetical protein Naga_101682g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5945	rna5945	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications