rna5942, rna5942 (mRNA) Nannochloropsis gaditana

Overview
Namerna5942
Unique Namerna5942
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1252
Alignment locationCM002467.1:168247..168827 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101138g2.1646.mrna
Orig protein idgnl|cribi|Naga_101138g2.1646
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:168247..168827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101138g2gene5740Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5942rna5942-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24745.1cds5927Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5942 ID=rna5942|Name=rna5942|organism=Nannochloropsis gaditana|type=mRNA|length=1252bp
CACTGGTTTGCTGATTACATAAAAACCCCAGGAGCAGGATGAAAGCAACT
CGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCTGTCTCCACC
AGCCTCTCGACCCTCCTCCTCCTCCATCCCTGACTCCAGTACTCTATCTC
AACACCTTCTCTCCCACTTTTCGGACTCTCCGCTTGGGAGCAACGAAGGG
AACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAATCTGGCCACT
TCTCCTTCCAAGTACCTTTTTTTTCATAACCCTCTTTGGTATCCAACCCA
TCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGATTAGGCGCTTCT
GATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATTGACGATGAAATA
CCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGATCGGAACGCTGG
GTGCCTTCTCCGACTATATGGGCCGCAGGAAAGTCCTCCTCATCAGCTCC
TGCGGACAGTTCCTTTACCTCTTGCTCTTCCTCCTTGCCCTCACACACTC
CTCGTCCTCATCCTCCACCCCGTCCGCCGCGCCCTCATCCCCCTCCTCTT
CCTCGTCCTACCGGGCTGCCCGCATTTGCCTCTTCGTGGCCACTTTCGTG
AATGGACTGACGGGCTCATACGGCACTTATTTGTCGGGCGTGTATGCCTA
TGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCGTCATTTTTG
CGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGACCTTTCTTG
TCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCTGGTGGTTCA
TGCGATCATGGCTGGATTGACGCTGGTGTTGATAGGATGCTGGGTGAAGG
AATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTTCGCATCTGCCGG
CAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTGGACACGGCAGCA
CCAGGCCGTGGAAGGGGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGGG
ACGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGCGGG
GGAGGGCCGGCGCCGTCCCTCTTGGCGTTGTCCGGGTGCTTCTGCCTGGC
CTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGTACTACGCCAAGA
GGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAAGCCCCGGGGGAAGAG
GA
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protein sequence of rna5942

>rna5942-protein ID=rna5942-protein|Name=rna5942|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MHSHVKAWREADPRDPDDGGVTTGVEQCLQRLRPRIPRVCVARAGIRLGG
RRGFPLPGISRLKEERGPEEGRKGRREGSVGVDWRRRGRGKANGCITPDG
GTRVPCHRSQMAGSKGVWNAGTN
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mRNA from alignment at CM002467.1:168247..168827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5942 ID=rna5942|Name=rna5942|organism=Nannochloropsis gaditana|type=mRNA|length=581bp|location=Sequence derived from alignment at CM002467.1:168247..168827+ (Nannochloropsis gaditana)
ATGCATTCGCATGTGAAGGCTTGGCGGGAAGCAGACCGTGTGCCAGGAAG
GGTGCCGCACAcagaccctcccttccatgtcCGCGTGCCTATCGTCATGC
CGGCGCCTTTTTTAATGTCCCTTTCATGCCGGTTCTCATTCACGTCGTAC
CCTCTTTCTTACgatcttccttccccctttcccccctccctgtccccccc
ctttttccctcccaccctccctcttccgcctgctcccgACCGCTAGCTCG
AGACCCTGACGACGGCGGTGTCACCACTGGTGTTGAACAGTGTCTACAac
gcctccgcccgcgcATTCCCCGAGTGTGTGTGGCTCGTGCTGGTATTCGC
CTTGGTGGGCGCCGAGGCTTCCCTCTACCTGGCATTTCGCGCCTTAAGGA
GGAACGAGGGccggaagaagggagaaaaggacggagggaaggctcTGTTG
GCGTCGATTGGCGAagacggggacgaggaaaggcaaATGGATGTATAACA
CCTGACGGTGGGACGCGTGTGCCATGCCATCGCTCACAGATGGCAGGTTC
GAAGGGCGTCTGGAATGCAGGTACAAATTGA
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Coding sequence (CDS) from alignment at CM002467.1:168247..168827+

>rna5942 ID=rna5942|Name=rna5942|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at CM002467.1:168247..168827+ (Nannochloropsis gaditana)
ATGCATTCGCATGTGAAGGCTTGGCGGGAAGCAGACCCTCGAGACCCTGA
CGACGGCGGTGTCACCACTGGTGTTGAACAGTGTCTACAacgcctccgcc
cgcgcATTCCCCGAGTGTGTGTGGCTCGTGCTGGTATTCGCCTTGGTGGG
CGCCGAGGCTTCCCTCTACCTGGCATTTCGCGCCTTAAGGAGGAACGAGG
GccggaagaagggagaaaaggacggagggaaggctcTGTTGGCGTCGATT
GGCGAagacggggacgaggaaaggcaaATGGATGTATAACACCTGACGGT
GGGACGCGTGTGCCATGCCATCGCTCACAGATGGCAGGTTCGAAGGGCGT
CTGGAATGCAGGTACAAATTGAATGCATTCGCATGTGAAGGCTTGGCGGG
AAGCAGACCCTCGAGACCCTGACGACGGCGGTGTCACCACTGGTGTTGAA
CAGTGTCTACAacgcctccgcccgcgcATTCCCCGAGTGTGTGTGGCTCG
TGCTGGTATTCGCCTTGGTGGGCGCCGAGGCTTCCCTCTACCTGGCATTT
CGCGCCTTAAGGAGGAACGAGGGccggaagaagggagaaaaggacggagg
gaaggctcTGTTGGCGTCGATTGGCGAagacggggacgaggaaaggcaaA
TGGATGTATAACACCTGACGGTGGGACGCGTGTGCCATGCCATCGCTCAC
AGATGGCAGGTTCGAAGGGCGTCTGGAATGCAGGTACAAATTGA
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Synonyms
Publications