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Properties
| Property Name | Value |
|---|
| Product | tetracycline-efflux transporter, putative |
| Orig transcript id | gnl|cribi|Naga_100513g3.7562.mrna |
| Orig protein id | gnl|cribi|Naga_100513g3.7562 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:165368..167606 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5941 ID=rna5941|Name=rna5941|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGTGCTTCAATTACGACGTACAGCGGTGGAGCGCTGAAGAAGCCCGCTC
TCAAACCAAAAGATGGGAAATGAGAGGCTTTACATGGAATCCCTGTCCGC
CCACTAGGCTGAGGCAGCGAAGAGGCTATGGATGTCAAGGTTTTAAGTGT
ATAAATGAGGAGCGATGGGCAATCACAGGGGAAAGAGGAGGACGCTTGGG
TGCCTACGGAGGGATTGTCCTCATCTAG back to topprotein sequence of rna5941 >rna5941-protein ID=rna5941-protein|Name=rna5941|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLG
SNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDR
LGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVL
LISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFV
ATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTA
GPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPF
RICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRD
GGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG back to topmRNA from alignment at CM002467.1:165368..167606+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5941 ID=rna5941|Name=rna5941|organism=Nannochloropsis gaditana|type=mRNA|length=2239bp|location=Sequence derived from alignment at CM002467.1:165368..167606+ (Nannochloropsis gaditana)
CACTGGTTTGCTGATTACATAAAAACCCCAGGAGCAGGATGAAAGCAACT
CGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCTGTCTCCACC
AGCCTCtcgaccctcctcctcctccatccctgaCTCCAGTACTCTATCTC
AacaccttctctcccactTTTCGGACTCTCCGCTTGGGAGCAACGAAGGG
AACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAATCTGgccact
tctccttccaagtaccttttttttcataACCCTCTTTGGTATCCAACCCA
TCCTATCCCAGTTTCTCATTCAGGTAAGAGGACAAAATTTCCAATGATCC
CGAACAATCTTTTTATCCTTACTCAAGGACTATGATTATTTCTTTCGGGC
AatatccttcccccccgaccttCTGAAAAGCTACGTTTGCTTTTCTtatc
ctcctctacctcctcccttcccacgggACCTCGTCCTGAATTTCTCGCAG
CTAGAATGTGACAGATTAGGCGCTTCTGATTGCGACAGTGCTAACATTAG
CGGGACGGCAGCATTGACGATGAAAGTACgtgttcctctccccttctcgg
tTTTCCCGCATTTTACCGTGGAGTGCATGTCTGGCTTTTGCCTTTCACAg
atcctttctctccttttcaAGCGCTCGACAATTTCTtattcctttctttc
cctcctcatccccttctCAGTACCTGTACGCACTTGAATTCGCCAGCGCC
ACCCTGACGATCGGAACGCTGGGTGCCTTCTCCGACTATATGGGCCGCAG
GAAagtcctcctcatcagctCCTGCGGACAGTTCCTTTAcctcttgctct
tcctccttgccctcacacactcctcgtcctcatcctccaccccgtccgcc
gcgccctcatccccctcctcttcctcgtcctacCGGGCTGCCCGCATTTG
CCTCTTCGTGGCCACTTTCGTGAATGGACTGACGGGCTCATACGGCACTT
ATTTGTCGGGCGTGTATGCCTATGCAGCAGGTACGTCTCTCTCCGTTAGt
gtcctcctgctctttttctcctttatTATGGGgggttcccctcctccccc
gcctttccctccctcctttgggCCTCTGAGGCGTGAGATTGGCCAGCTTT
AGGGTCCTGATACCAGGGAACGAAGAGGCCATAAACGACTTGCTCGCCCT
CTCGAACGCACCCACATGTCAACCAATTTAAAAAATGTAAGCAATCGAAA
ATCTTTCAAATATCCAAACATGCGAACATCCACCTGCACGTCAACGCGGG
TGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCGTCATTTTTGCGA
AAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGACCTTTCTTGTCC
GGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCTGGTGGTTCATGC
GATCATGGCTGGATTGACGCTGGTGTTGATAGGTGAGTcttggggaaggg
atggggggatTGTAGAGTGCTGGTTCGGGCCGTAGCTATTGAGTACTGCC
Tgtgaggatgatgaagatgggggggttggggaaggtatagggaggaggaa
gaggacgtgtCTGTGTCTTCGAAGCGTGACGATTGTGGAGACTTGTCCTG
CTCGTTGGAAACCGGCGTATCGTGTGCTTCAAACAAATTTTCCATCTCTG
TTAGGTTCCCtcattctccctccctccttccgtcccttcttccctccctg
ccgccctcccttcctccccccctccctccctccctcccgctgtccctccc
tccctccctccctcccgctgtccctccctccctccctccctcccgctgtc
cctccctccctccctccctcaggatGCTGGGTGAAGGAATCGCTGGACCC
CGGGGACAAGCCCTCCGAGCCCTTTCGCATCTGCCGGCAGCACAACACCT
TCGTGGTCCTCTATCAGTTCCTCTGGACACGGCAGCACCAGgccgtggaa
gggggagggcgggacggagggcgggacggagggcgggacggagggcggga
cggagggcgggacggagggcgggacggagggcgcgggggagggccggcgc
CGTCCCTCTTGGCGTTGTCCGGGTGCTTCTGCCTGGCCTTCCTGGGCCTG
GTGGGGCAGGGGACGATATTTGTGTACTACGCCAAGAGGATGTTCGGATG
GAAAGCCGACGTGCTCGGGTAAGCcccgggggaagagga back to topCoding sequence (CDS) from alignment at CM002467.1:165368..167606+ >rna5941 ID=rna5941|Name=rna5941|organism=Nannochloropsis gaditana|type=CDS|length=5985bp|location=Sequence derived from alignment at CM002467.1:165368..167606+ (Nannochloropsis gaditana)
ATGAAAGCAACTCGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGC
GCTGTCTCCACCAGCCTCtcgaccctcctcctcctccatccctgaCTCCA
GTACTCTATCTCAacaccttctctcccactTTTCGGACTCTCCGCTTGGG
AGCAACGAAGGGAACACGACGAATTCGACACATGCTGGCCTGGCGTCGTC
AATCTGgccacttctccttccaagtaccttttttttcataACCCTCTTTG
GTATCCAACCCATCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGA
TTAGGCGCTTCTGATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATT
GACGATGAAATACCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGA
TCGGAACGCTGGGTGCCTTCTCCGACTATATGGGCCGCAGGAAagtcctc
ctcatcagctCCTGCGGACAGTTCCTTTAcctcttgctcttcctccttgc
cctcacacactcctcgtcctcatcctccaccccgtccgccgcgccctcat
ccccctcctcttcctcgtcctacCGGGCTGCCCGCATTTGCCTCTTCGTG
GCCACTTTCGTGAATGGACTGACGGGCTCATACGGCACTTATTTGTCGGG
CGTGTATGCCTATGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGG
GCGTCATTTTTGCGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCG
GGACCTTTCTTGTCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCC
TCTGGTGGTTCATGCGATCATGGCTGGATTGACGCTGGTGTTGATAGgat
GCTGGGTGAAGGAATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTT
CGCATCTGCCGGCAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTG
GACACGGCAGCACCAGgccgtggaagggggagggcgggacggagggcggg
acggagggcgggacggagggcgggacggagggcgggacggagggcgggac
ggagggcgcgggggagggccggcgcCGTCCCTCTTGGCGTTGTCCGGGTG
CTTCTGCCTGGCCTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGT
ACTACGCCAAGAGGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAAATG
AAAGCAACTCGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCT
GTCTCCACCAGCCTCtcgaccctcctcctcctccatccctgaCTCCAGTA
CTCTATCTCAacaccttctctcccactTTTCGGACTCTCCGCTTGGGAGC
AACGAAGGGAACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAAT
CTGgccacttctccttccaagtaccttttttttcataACCCTCTTTGGTA
TCCAACCCATCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGATTA
GGCGCTTCTGATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATTGAC
GATGAAATACCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGATCG
GAACGCTGGGTGCCTTCTCCGACTATATGGGCCGCAGGAAagtcctcctc
atcagctCCTGCGGACAGTTCCTTTAcctcttgctcttcctccttgccct
cacacactcctcgtcctcatcctccaccccgtccgccgcgccctcatccc
cctcctcttcctcgtcctacCGGGCTGCCCGCATTTGCCTCTTCGTGGCC
ACTTTCGTGAATGGACTGACGGGCTCATACGGCACTTATTTGTCGGGCGT
GTATGCCTATGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCG
TCATTTTTGCGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGA
CCTTTCTTGTCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCT
GGTGGTTCATGCGATCATGGCTGGATTGACGCTGGTGTTGATAGgatGCT
GGGTGAAGGAATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTTCGC
ATCTGCCGGCAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTGGAC
ACGGCAGCACCAGgccgtggaagggggagggcgggacggagggcgggacg
gagggcgggacggagggcgggacggagggcgggacggagggcgggacgga
gggcgcgggggagggccggcgcCGTCCCTCTTGGCGTTGTCCGGGTGCTT
CTGCCTGGCCTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGTACT
ACGCCAAGAGGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAAATGAAA
GCAACTCGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCTGTC
TCCACCAGCCTCtcgaccctcctcctcctccatccctgaCTCCAGTACTC
TATCTCAacaccttctctcccactTTTCGGACTCTCCGCTTGGGAGCAAC
GAAGGGAACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAATCTG
gccacttctccttccaagtaccttttttttcataACCCTCTTTGGTATCC
AACCCATCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGATTAGGC
GCTTCTGATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATTGACGAT
GAAATACCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGATCGGAA
CGCTGGGTGCCTTCTCCGACTATATGGGCCGCAGGAAagtcctcctcatc
agctCCTGCGGACAGTTCCTTTAcctcttgctcttcctccttgccctcac
acactcctcgtcctcatcctccaccccgtccgccgcgccctcatccccct
cctcttcctcgtcctacCGGGCTGCCCGCATTTGCCTCTTCGTGGCCACT
TTCGTGAATGGACTGACGGGCTCATACGGCACTTATTTGTCGGGCGTGTA
TGCCTATGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCGTCA
TTTTTGCGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGACCT
TTCTTGTCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCTGGT
GGTTCATGCGATCATGGCTGGATTGACGCTGGTGTTGATAGgatGCTGGG
TGAAGGAATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTTCGCATC
TGCCGGCAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTGGACACG
GCAGCACCAGgccgtggaagggggagggcgggacggagggcgggacggag
ggcgggacggagggcgggacggagggcgggacggagggcgggacggaggg
cgcgggggagggccggcgcCGTCCCTCTTGGCGTTGTCCGGGTGCTTCTG
CCTGGCCTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGTACTACG
CCAAGAGGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAAATGAAAGCA
ACTCGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCTGTCTCC
ACCAGCCTCtcgaccctcctcctcctccatccctgaCTCCAGTACTCTAT
CTCAacaccttctctcccactTTTCGGACTCTCCGCTTGGGAGCAACGAA
GGGAACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAATCTGgcc
acttctccttccaagtaccttttttttcataACCCTCTTTGGTATCCAAC
CCATCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGATTAGGCGCT
TCTGATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATTGACGATGAA
ATACCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGATCGGAACGC
TGGGTGCCTTCTCCGACTATATGGGCCGCAGGAAagtcctcctcatcagc
tCCTGCGGACAGTTCCTTTAcctcttgctcttcctccttgccctcacaca
ctcctcgtcctcatcctccaccccgtccgccgcgccctcatccccctcct
cttcctcgtcctacCGGGCTGCCCGCATTTGCCTCTTCGTGGCCACTTTC
GTGAATGGACTGACGGGCTCATACGGCACTTATTTGTCGGGCGTGTATGC
CTATGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCGTCATTT
TTGCGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGACCTTTC
TTGTCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCTGGTGGT
TCATGCGATCATGGCTGGATTGACGCTGGTGTTGATAGgatGCTGGGTGA
AGGAATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTTCGCATCTGC
CGGCAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTGGACACGGCA
GCACCAGgccgtggaagggggagggcgggacggagggcgggacggagggc
gggacggagggcgggacggagggcgggacggagggcgggacggagggcgc
gggggagggccggcgcCGTCCCTCTTGGCGTTGTCCGGGTGCTTCTGCCT
GGCCTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGTACTACGCCA
AGAGGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAAATGAAAGCAACT
CGCGGAGACACGGGAAGTGCTTCCTCCGACAAGGCGGCGCTGTCTCCACC
AGCCTCtcgaccctcctcctcctccatccctgaCTCCAGTACTCTATCTC
AacaccttctctcccactTTTCGGACTCTCCGCTTGGGAGCAACGAAGGG
AACACGACGAATTCGACACATGCTGGCCTGGCGTCGTCAATCTGgccact
tctccttccaagtaccttttttttcataACCCTCTTTGGTATCCAACCCA
TCCTATCCCAGTTTCTCATTCAGCTAGAATGTGACAGATTAGGCGCTTCT
GATTGCGACAGTGCTAACATTAGCGGGACGGCAGCATTGACGATGAAATA
CCTGTACGCACTTGAATTCGCCAGCGCCACCCTGACGATCGGAACGCTGG
GTGCCTTCTCCGACTATATGGGCCGCAGGAAagtcctcctcatcagctCC
TGCGGACAGTTCCTTTAcctcttgctcttcctccttgccctcacacactc
ctcgtcctcatcctccaccccgtccgccgcgccctcatccccctcctctt
cctcgtcctacCGGGCTGCCCGCATTTGCCTCTTCGTGGCCACTTTCGTG
AATGGACTGACGGGCTCATACGGCACTTATTTGTCGGGCGTGTATGCCTA
TGCAGCAGATCTGACCAAGCGAAAACCGACGGATCGGGGCGTCATTTTTG
CGAAAATCGTGGGCTGCCTTGCCCTTGGCAACACGGCGGGACCTTTCTTG
TCCGGGCTCTTACTGAACGGAGCGGGCTTCTTCCTGCCTCTGGTGGTTCA
TGCGATCATGGCTGGATTGACGCTGGTGTTGATAGgatGCTGGGTGAAGG
AATCGCTGGACCCCGGGGACAAGCCCTCCGAGCCCTTTCGCATCTGCCGG
CAGCACAACACCTTCGTGGTCCTCTATCAGTTCCTCTGGACACGGCAGCA
CCAGgccgtggaagggggagggcgggacggagggcgggacggagggcggg
acggagggcgggacggagggcgggacggagggcgggacggagggcgcggg
ggagggccggcgcCGTCCCTCTTGGCGTTGTCCGGGTGCTTCTGCCTGGC
CTTCCTGGGCCTGGTGGGGCAGGGGACGATATTTGTGTACTACGCCAAGA
GGATGTTCGGATGGAAAGCCGACGTGCTCGGGTAA back to top
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