EWM24747.1, cds5926 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|585106293|gb|EWM24747.1| (tetracycline-efflux transporter, putative [Nannochloropsis gaditana]) HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0 Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
Query: 1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398
MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG
Sbjct: 1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|553182148|ref|XP_005853686.1| (tetracycline resistance protein [Nannochloropsis gaditana CCMP526] >gi|422295375|gb|EKU22674.1| tetracycline resistance protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0 Identity = 394/398 (98.99%), Postives = 394/398 (98.99%), Query Frame = 0
Query: 1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398
MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEG GGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG
Sbjct: 1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEG----GGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 394
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|553190097|ref|XP_005855125.1| (hypothetical protein NGA_0101300 [Nannochloropsis gaditana CCMP526] >gi|422293934|gb|EKU21234.1| hypothetical protein NGA_0101300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 367.081 bits (941), Expect = 1.441e-124 Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 0
Query: 91 QFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIG 283
F QLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLI
Sbjct: 10 HFSFQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIA 202
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|763725497|gb|KJA22926.1| (hypothetical protein HYPSUDRAFT_138336 [Hypholoma sublateritium FD-334 SS-4]) HSP 1 Score: 67.0106 bits (162), Expect = 2.187e-8 Identity = 70/220 (31.82%), Postives = 97/220 (44.09%), Query Frame = 0
Query: 50 GSNEGNTTNST----HAGLASSIWPL---LLPSTFFFITLFGIQPILSQFLIQLECDRLGASDC--DSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLN 260
G + N T +T HA L +SI PL +P+T F + + R+ ++ C D A +G A L + SA LT G G F + GR KVL IS+ G FL L F+L T P SP + ++ L +A + GL G + T SGV AY +D T P R IF++ G + LG AGP + G L+
Sbjct: 71 GDHRWNHTQTTPAELHASLFASIDPLGPHFVPTTLFLRDSDDTE----------DPRRIPSARCQADPAVQAGAARLQTMMTTIMGLLSA-LTTGWWGHFGERNGRTKVLAISTLGLFLTDLTFILVST------------PGSPLAQHGHK----LLLMAPVIEGLLGGWSTLQSGVSAYLSDCT--SPGSRAHIFSRFQGVVYLGFAAGPSIGGWLIQ 261
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|676483658|ref|XP_009063095.1| (hypothetical protein LOTGIDRAFT_73586, partial [Lottia gigantea] >gi|556097483|gb|ESO86135.1| hypothetical protein LOTGIDRAFT_73586, partial [Lottia gigantea]) HSP 1 Score: 63.5438 bits (153), Expect = 1.843e-7 Identity = 55/193 (28.50%), Postives = 89/193 (46.11%), Query Frame = 0
Query: 107 DSANISGTAALTMKYLYALEFASATLTIG-TLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSE 298
+ I A+L Y YAL A + I LG SD++GRR + +I G FL ++ L + + + +++A+ V+GL GSY L + Y+AD+T +R V A + GCLA+ + G SG L+ G+F P+++ AI A + L L + E+L +P +
Sbjct: 58 EQIKIQKEASLLSLY-YALTSGVAAIAINLILGPLSDFIGRRILFIIPIVGLFLKCVITSLIVYFDLNLN---------------------LMYLASAVDGLCGSYYAILVASFTYSADVT-VPGKNRTVAIACMEGCLAVAASVGALSSGFLIKSTGYFYPVLMFAIAAAINLTLTFFCLPETLTEKKQPEK 227
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|1214827662|gb|OWZ62463.1| (hypothetical protein AYX15_05408 [Cryptococcus neoformans var. grubii]) HSP 1 Score: 62.3882 bits (150), Expect = 8.547e-7 Identity = 55/194 (28.35%), Postives = 88/194 (45.36%), Query Frame = 0
Query: 98 CDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFL-PLVVHAIMAGLTLVLIGCWVKESL 290
C + +A ++ T LTM +L AL T G G SD GR KV+ + G FL L F+L ++ P AP YR+ L + V G+ G + T + V AY +D+T +R + F++ +G + G GP L +L+ G + P ++ I+ L++ L+ + ESL
Sbjct: 358 CKKDPKVQAAAAKLTMTLTLTMGFLSAL-------TTGFWGGTSDKWGRTKVMAVVEVGLFLNELCFILV-------ANFPHLAP------GGYRS----LLIGPTVEGILGGFSTITATVNAYLSDITPDG--NRVMAFSRAIGFMMAGFAFGPVLGSILIQSTGDIMTPFYINLILYSLSIPLVLFLLPESL 525
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|1214835007|gb|OWZ69539.1| (hypothetical protein AYX14_05087 [Cryptococcus neoformans var. grubii]) HSP 1 Score: 62.3882 bits (150), Expect = 9.399e-7 Identity = 55/194 (28.35%), Postives = 88/194 (45.36%), Query Frame = 0
Query: 98 CDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFL-PLVVHAIMAGLTLVLIGCWVKESL 290
C + +A ++ T LTM +L AL T G G SD GR KV+ + G FL L F+L ++ P AP YR+ L + V G+ G + T + V AY +D+T +R + F++ +G + G GP L +L+ G + P ++ I+ L++ L+ + ESL
Sbjct: 358 CKKDPKVQAAAAKLTMTLTLTMGFLSAL-------TTGFWGGTSDKWGRTKVMAVVEVGLFLNELCFILV-------ANFPHLAP------GGYRS----LLIGPTVEGILGGFSTITATVNAYLSDITPDG--NRVMAFSRAIGFMMAGFAFGPVLGSILIQSTGDIMTPFYINLILYSLSIPLVLFLLPESL 525 The following BLAST results are available for this feature:
BLAST of EWM24747.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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