EWM24747.1, cds5926 (CDS) Nannochloropsis gaditana

Overview
NameEWM24747.1
Unique Namecds5926
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:165406..165690 +
Alignment locationCM002467.1:165868..165942 +
Alignment locationCM002467.1:166088..166397 +
Alignment locationCM002467.1:166673..166849 +
Alignment locationCM002467.1:167240..167589 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24747.1
Producttetracycline-efflux transporter, putative
Orig transcript idgnl|cribi|Naga_100513g3.7562.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:165406..165690 +
CM002467.1supercontigCM002467.1:165868..165942 +
CM002467.1supercontigCM002467.1:166088..166397 +
CM002467.1supercontigCM002467.1:166673..166849 +
CM002467.1supercontigCM002467.1:167240..167589 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|585106293|gb|EWM24747.1| (tetracycline-efflux transporter, putative [Nannochloropsis gaditana])

HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
Query:    1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398
            MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG
Sbjct:    1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|553182148|ref|XP_005853686.1| (tetracycline resistance protein [Nannochloropsis gaditana CCMP526] >gi|422295375|gb|EKU22674.1| tetracycline resistance protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 394/398 (98.99%), Postives = 394/398 (98.99%), Query Frame = 0
Query:    1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEGGGRDGGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 398
            MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEG    GGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG
Sbjct:    1 MKATRGDTGSASSDKAALSPPASRPSSSSIPDSSTLSQHLLSHFSDSPLGSNEGNTTNSTHAGLASSIWPLLLPSTFFFITLFGIQPILSQFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSEPFRICRQHNTFVVLYQFLWTRQHQAVEG----GGRDGGRDGGRDGGRDGGRDGGRGGGPAPSLLALSGCFCLAFLGLVGQGTIFVYYAKRMFGWKADVLG 394          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|553190097|ref|XP_005855125.1| (hypothetical protein NGA_0101300 [Nannochloropsis gaditana CCMP526] >gi|422293934|gb|EKU21234.1| hypothetical protein NGA_0101300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 367.081 bits (941), Expect = 1.441e-124
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 0
Query:   91 QFLIQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIG 283
             F  QLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLI 
Sbjct:   10 HFSFQLECDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIA 202          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|763725497|gb|KJA22926.1| (hypothetical protein HYPSUDRAFT_138336 [Hypholoma sublateritium FD-334 SS-4])

HSP 1 Score: 67.0106 bits (162), Expect = 2.187e-8
Identity = 70/220 (31.82%), Postives = 97/220 (44.09%), Query Frame = 0
Query:   50 GSNEGNTTNST----HAGLASSIWPL---LLPSTFFFITLFGIQPILSQFLIQLECDRLGASDC--DSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLN 260
            G +  N T +T    HA L +SI PL    +P+T F       +          +  R+ ++ C  D A  +G A L       +   SA LT G  G F +  GR KVL IS+ G FL  L F+L  T            P SP +   ++     L +A  + GL G + T  SGV AY +D T   P  R  IF++  G + LG  AGP + G L+ 
Sbjct:   71 GDHRWNHTQTTPAELHASLFASIDPLGPHFVPTTLFLRDSDDTE----------DPRRIPSARCQADPAVQAGAARLQTMMTTIMGLLSA-LTTGWWGHFGERNGRTKVLAISTLGLFLTDLTFILVST------------PGSPLAQHGHK----LLLMAPVIEGLLGGWSTLQSGVSAYLSDCT--SPGSRAHIFSRFQGVVYLGFAAGPSIGGWLIQ 261          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|676483658|ref|XP_009063095.1| (hypothetical protein LOTGIDRAFT_73586, partial [Lottia gigantea] >gi|556097483|gb|ESO86135.1| hypothetical protein LOTGIDRAFT_73586, partial [Lottia gigantea])

HSP 1 Score: 63.5438 bits (153), Expect = 1.843e-7
Identity = 55/193 (28.50%), Postives = 89/193 (46.11%), Query Frame = 0
Query:  107 DSANISGTAALTMKYLYALEFASATLTIG-TLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFLPLVVHAIMAGLTLVLIGCWVKESLDPGDKPSE 298
            +   I   A+L   Y YAL    A + I   LG  SD++GRR + +I   G FL  ++  L +    + +                      +++A+ V+GL GSY   L   + Y+AD+T     +R V  A + GCLA+  + G   SG L+   G+F P+++ AI A + L L    + E+L    +P +
Sbjct:   58 EQIKIQKEASLLSLY-YALTSGVAAIAINLILGPLSDFIGRRILFIIPIVGLFLKCVITSLIVYFDLNLN---------------------LMYLASAVDGLCGSYYAILVASFTYSADVT-VPGKNRTVAIACMEGCLAVAASVGALSSGFLIKSTGYFYPVLMFAIAAAINLTLTFFCLPETLTEKKQPEK 227          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|1214827662|gb|OWZ62463.1| (hypothetical protein AYX15_05408 [Cryptococcus neoformans var. grubii])

HSP 1 Score: 62.3882 bits (150), Expect = 8.547e-7
Identity = 55/194 (28.35%), Postives = 88/194 (45.36%), Query Frame = 0
Query:   98 CDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFL-PLVVHAIMAGLTLVLIGCWVKESL 290
            C +       +A ++ T  LTM +L AL       T G  G  SD  GR KV+ +   G FL  L F+L        ++ P  AP        YR+    L +   V G+ G + T  + V AY +D+T     +R + F++ +G +  G   GP L  +L+   G  + P  ++ I+  L++ L+   + ESL
Sbjct:  358 CKKDPKVQAAAAKLTMTLTLTMGFLSAL-------TTGFWGGTSDKWGRTKVMAVVEVGLFLNELCFILV-------ANFPHLAP------GGYRS----LLIGPTVEGILGGFSTITATVNAYLSDITPDG--NRVMAFSRAIGFMMAGFAFGPVLGSILIQSTGDIMTPFYINLILYSLSIPLVLFLLPESL 525          
BLAST of EWM24747.1 vs. NCBI_GenBank
Match: gi|1214835007|gb|OWZ69539.1| (hypothetical protein AYX14_05087 [Cryptococcus neoformans var. grubii])

HSP 1 Score: 62.3882 bits (150), Expect = 9.399e-7
Identity = 55/194 (28.35%), Postives = 88/194 (45.36%), Query Frame = 0
Query:   98 CDRLGASDCDSANISGTAALTMKYLYALEFASATLTIGTLGAFSDYMGRRKVLLISSCGQFLYLLLFLLALTHSSSSSSTPSAAPSSPSSSSSYRAARICLFVATFVNGLTGSYGTYLSGVYAYAADLTKRKPTDRGVIFAKIVGCLALGNTAGPFLSGLLLNGAGFFL-PLVVHAIMAGLTLVLIGCWVKESL 290
            C +       +A ++ T  LTM +L AL       T G  G  SD  GR KV+ +   G FL  L F+L        ++ P  AP        YR+    L +   V G+ G + T  + V AY +D+T     +R + F++ +G +  G   GP L  +L+   G  + P  ++ I+  L++ L+   + ESL
Sbjct:  358 CKKDPKVQAAAAKLTMTLTLTMGFLSAL-------TTGFWGGTSDKWGRTKVMAVVEVGLFLNELCFILV-------ANFPHLAP------GGYRS----LLIGPTVEGILGGFSTITATVNAYLSDITPDG--NRVMAFSRAIGFMMAGFAFGPVLGSILIQSTGDIMTPFYINLILYSLSIPLVLFLLPESL 525          
The following BLAST results are available for this feature:
BLAST of EWM24747.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585106293|gb|EWM24747.1|0.000e+0100.00tetracycline-efflux transporter, putative [Nannoch... [more]
gi|553182148|ref|XP_005853686.1|0.000e+098.99tetracycline resistance protein [Nannochloropsis g... [more]
gi|553190097|ref|XP_005855125.1|1.441e-12497.93hypothetical protein NGA_0101300 [Nannochloropsis ... [more]
gi|763725497|gb|KJA22926.1|2.187e-831.82hypothetical protein HYPSUDRAFT_138336 [Hypholoma ... [more]
gi|676483658|ref|XP_009063095.1|1.843e-728.50hypothetical protein LOTGIDRAFT_73586, partial [Lo... [more]
gi|1214827662|gb|OWZ62463.1|8.547e-728.35hypothetical protein AYX15_05408 [Cryptococcus neo... [more]
gi|1214835007|gb|OWZ69539.1|9.399e-728.35hypothetical protein AYX14_05087 [Cryptococcus neo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5941rna5941Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications