rna5940, rna5940 (mRNA) Nannochloropsis gaditana

Overview
Namerna5940
Unique Namerna5940
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length285
Alignment locationCM002467.1:159178..159405 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100513g2.7564.mrna
Orig protein idgnl|cribi|Naga_100513g2.7564
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:159178..159405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100513g2gene5738Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5940rna5940-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24749.1cds5925Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5940 ID=rna5940|Name=rna5940|organism=Nannochloropsis gaditana|type=mRNA|length=285bp
ATGTTGTGCTGTCAGCCTCAAAGGGTCTCGGTGCAGGACGTCTGCGCGGG
CCGAGAAGCTCAGTCGGATGACGAACCAAACGGAAGGGATGCAACAGCGG
GCGATGGATTTCGCAGCGGCCGCCAAGGCATTGGCCGAACGGGAAAAAAG
AAGGAAATGGTGGGAGCTTTGACGAGAAGATGCTGCAGCGCAGTGAGCCT
GGTCTTAGATGATTTAATCACAGGGAAAAGGATGAGCCAGCGCAAAGAAT
GTAGACTTAGTTTTATGAATTCCCGTGCTGTCTAG
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protein sequence of rna5940

>rna5940-protein ID=rna5940-protein|Name=rna5940|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MCFNYDVQRWSAEEARSQTKRWEMRGFTWNPCPPTRLRQRRGYGCQGFKC
INEERWAITGERGGRLGAYGGIVLI
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mRNA from alignment at CM002467.1:159178..159405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5940 ID=rna5940|Name=rna5940|organism=Nannochloropsis gaditana|type=mRNA|length=228bp|location=Sequence derived from alignment at CM002467.1:159178..159405+ (Nannochloropsis gaditana)
ATGTGCTTCAATTACGACGTACAGCGGTGGAGCGCTGAAGAAGCCCGCTC
TCAAACCAAAAGATGGGAAATGAGAGGCTTTACATGGAATCCCTGTCCGC
CCACTAGGCTGAGGCAGCGAAGAGGCTATGGATGTCAAGGTTTTAAGTGT
ATAAATGAGGAGCGATGGGCAATcacaggggaaagaggaggacgcttGGG
TGCCTACGGAGGGATTGTCCTCATCTAG
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Coding sequence (CDS) from alignment at CM002467.1:159178..159405+

>rna5940 ID=rna5940|Name=rna5940|organism=Nannochloropsis gaditana|type=CDS|length=228bp|location=Sequence derived from alignment at CM002467.1:159178..159405+ (Nannochloropsis gaditana)
ATGTGCTTCAATTACGACGTACAGCGGTGGAGCGCTGAAGAAGCCCGCTC
TCAAACCAAAAGATGGGAAATGAGAGGCTTTACATGGAATCCCTGTCCGC
CCACTAGGCTGAGGCAGCGAAGAGGCTATGGATGTCAAGGTTTTAAGTGT
ATAAATGAGGAGCGATGGGCAATcacaggggaaagaggaggacgcttGGG
TGCCTACGGAGGGATTGTCCTCATCTAG
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Synonyms
Publications