rna594, rna594 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna594
Unique Name	rna594
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	411
Alignment location	CM002455.1:1483008..1486119 +

Link to JBrowse

Properties


Property Name	Value
Product	urease
Orig transcript id	gnl\|cribi\|Naga_100173g2.4680.mrna
Orig protein id	gnl\|cribi\|Naga_100173g2.4680
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1483008..1486119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100173g2	gene572	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna594	rna594-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30074.1	cds594	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1483008..1486119+
coding sequence from alignment at CM002455.1:1483008..1486119+

mRNA sequence

>rna594 ID=rna594|Name=rna594|organism=Nannochloropsis gaditana|type=mRNA|length=411bp
ATGTCGATGCCTGTTGAGAGACCGAAAAATGAATTAGAAGGTGAACTGCT
GCCTTCATCGCCACACGAGCAGCAGGAACTAGAAATTCCACCACAACGAC
AAGCGCCCACTCCAGCCGCCGCCTCAACAACATCACTGGCTGTAGCACGG
GCAGCAGCAAAAACGCCACCAATGACAGACATCGATGACCAGGAGCATAA
TTGTCGGACGCTTGCTTCTGATGAAGATGTCGACCGTAAGCTGTGGGGTA
TGCGTCCGCCGTCCTCAACCTCCTGGGCCAGATTATCCGGGGCGGCAGAT
TTACTCTCCACCATTTTTCGCTTTTTACAATTGCGGGAATTGAATGCCAT
CGCATGCTGTGGCTCGCACGCCTGCATGCTGAATGGTGGATGCACGCGAG
GAGGTGGTTGA

protein sequence of rna594

>rna594-protein ID=rna594-protein|Name=rna594|organism=Nannochloropsis gaditana|type=polypeptide|length=887bp
MRLSPREVDKLLLQQVGLLAQRRLARGLRLNHPECTALIATVLIEMMRDG
NKTCAELMDLGRCILGHRQVLPGIACMVEEIQIEGTFPDGTKLVTVHEPI
SRLDGELQLALYGSFLPIPSLDLFTPPSSAYLEGGEGKEEAEQEEEEALG
HFLTPPGATWNVNEGREITALRVTNMADRPIQVGSHYHFIETNPYLCFDR
ARAYGKRLNILAGTAVRFEPGETKTVALVEIAGKKVVRGGNSLCDGPVEA
GKIAGIVEGLMKKGFLHEPQDEGEEGAEGGKEDEGEGRKRRKTNVLAPLT
VCRAHYSHFYGPSVGDVVRLGDTALYVRVERDLTWPVGDECKFGGGKVIR
EGMGQATLETETCLETVLTNALVVDYTGIYKADVGLRGHRIVGIGKAGNP
DMMANVTPGMVIGVGTDVIAAEGMILTAGGMDAHVHFICPQQADDALASG
VTTFVGGGTGPSTGTKATTCTPAPAHVAFMLQSTDSIPLNIGLTGKGNTS
RPEGLEAVVEAGAIGLKLHEDWGTTPAAIDCCLGVAERMDVQVTIHTDTL
NEAGCVEHSIAAFKGRTIHTYHSEGAGGGHAPDIISVCGEPNVLPSSTNP
TKPYTKNTVDEHVDMLMVCHHLDSCIPEDVAFADSRIRGETIAAEDILHD
LGAISIISSDSQAMGRVGEVITRTWQTAHKMRLQRGQLQEDQEREEEWTR
QEEGNGWALPPGVTTENFRVRRYVAKYTINPAIAHGMSHVIGSVEVGKWA
DLVLWSPAFFGAKPEMVLKGGVVAWSQMGDANGSIPTPEPVIMRPMYGAT
PGGLGEACLAFVSQKSVETGRASALGLRKRVEAVRGNRMVGKRDMKLNDA
LPKIKVDPETFRVTADGVHLTCEPLEVLPLAQRYYLF

mRNA from alignment at CM002455.1:1483008..1486119+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna594 ID=rna594|Name=rna594|organism=Nannochloropsis gaditana|type=mRNA|length=3112bp|location=Sequence derived from alignment at CM002455.1:1483008..1486119+ (Nannochloropsis gaditana)
ACGGCGTTTTTACCCTCTTCTCACCAACTGTCTCGCACATTTCTTGATAG
GTGTGAGGGATATGCGACTCTCGCCTCGTGAAGTAGACAAATTACTGCTT
CAGCAGGTGGGCTTGCTCGCACAAAGACGTCTGGCCAGGGGCCTCCGTTT
GAATCACCCAGAATGCACCGCTTTGATAGCCACAGTTCTCATAGAAATGA
TGCGAGACGGGAATAAAACCTGCGCGGAGCTCATGGATCTAGGTCGTTGT
ATTCTTGGACATCGGCAAGTCCTCCCGGGGATCGCATGCATGGTGGAAGA
AATTCAGATCGAAGGGACCTTCCCGGACGGCACCAAGTTGGTGACAGTGC
ATGAGCCCATTTCCCGCTTGGACGGGGAATTACAACTGGCACTGTATGGA
AGTTTCCTGCCTATACCATCCCTCGACCTTTTCACGCCCCCATCATCAGC
Gtacttggagggaggggaggggaaggaggaggcggagcaggaggaagagg
aggccttggGTCATTTTTTAACGCCACCAGGGGCAACTTGGAACGTGAAC
GAAGGACGGGAAATCACAGCATTGCGGGTCACGAATATGGCAGATCGTCC
GATCCAGGTGGGCTCGCATTACCATTTCATTGAGACCAACCCGTATTTGT
GCTTTGACCGTGCTCGCGCCTACGGCAAACGTCTGAATATTTTGGCGGGC
ACGGCCGTCAGGTTCGAGCCCGGAGAGACGAAGACTGTGGCGTTGGTGGA
GATAGCGGGGAAGAAAGTGGTACGGGGGGGCAATAGTTTGTGTGACGGGC
CGGTAGAGGCAGGTAAAATCGCAGGCATTGTGGAGGGCTTGATGAAGAAA
GGTTTCCTGCACGAGCcccaggacgagggggaggaaggggccgagggagg
gaaggaggacgagggggagggaagaaagcggaggaagactaACGTGCTGG
CACCCTTGACCGTGTGCCGGGCGCACTACTCGCATTTTTACGGGCCGAGC
GTTGGGGACGTGGTGCGGTTGGGCGACACCGCCTTGTACGTCCGGGTCGA
GCGAGACTTGACGTGGCCCGTGGGCGATGAATGTAAATTcggcgggggga
aggtgatCCGGGAAGGGATGGGCCAGGCGACGTTGGAGACGGAGACGTGC
TTGGAAACCGTGTTGACGAACGCGCTGGTGGTGGACTACACGGGCATCTA
CAAGGCAGATGTGGGTCTGCGGGGACATCGGATCGTCGGGATCGGGAAAG
CGGGAAACCCCGACATGATGGCGAACGTGACGCCCGGCATGGTGATTGGG
GTAGGCACGGATGTGATTGCGGCGGAAGGGATGATTTTGACGGCGGGGGG
TATGGACGCCCACGTGCACTTTATTTGTCCCCAGCAGGCGGACGATGCCC
TCGCCTCTGGAGTCACAACCTTCGTAGGGGGCGGCACGGGCCCGAGCACA
GGCACCAAGGCCACCACCTGCACGCCTGCCCCGGCCCATGTCGCCTTCAT
GCTGCAGAGCACGGACAGCATCCCCCTCAACATTGGGCtgacggggaaag
ggaacaCGAGTCGGccggagggcttggaggcggtggtggaggcgggggcg
atcGGGCTCAAGCTCCACGAGGACTGGGGAACGACGCCGGCGGCGATCGA
TTGCTGCCTGGGCGTGGCCGAGAGGATGGACGTGCAGGTGACGATCCACA
CGGATACCCTCAACGAAGCGGGGTGCGTGGAGCATTCCATCGCCGCTTTT
AAAGGCCGGACCATCCACACCTACCACAgcgaaggggcggggggggggca
cgcccCAGACATCATCTCGGTGTGCGGGGAGCCGAACGtgctgccttcct
ccacgaacCCCACCAAACCGTACACCAAAAACACGGTGGACGAGCATGTG
GACATGCTAATGGTCTGCCACCATTTGGACTCGTGCATCCCGGAAGATGT
GGCCTTTGCCGACTCCCGGATCCGCGGGGAAACCATCGCTGCCGAAGATA
TCCTCCACGACCTGGGAGCGATTTCCATCATTTCGTCGGTGAGGCTCGGG
GGGGCTCCGGTGTTTTTCGGGATGTCGCGCGTCTGACTCGTTTTGACTTC
CTGTCTGACAAATTATCGACGATACCCAGAGGATTTAAAGGACCGTTGAC
GGTCCATGATCAGCACACTATACTCAAGGTATGAGTTCAATCCAGCGTTC
tcacctgctccctccctgcctgcatCTCTACCCGTCCCGTATCCACAGGA
TTCTCAGGCCATGGGGCGGGTGGGCGAGGTGATCACACGCACCTGGCAAA
CAGCCCACAAGATGCGGCTGCAACGGGGACAACTgcaggaggaccaggag
cgggaggaggaatggacgcggcaggaggaagggaacggatGGGCGTTGCC
GCCTGGCGTGACCACCGAGAATTTCCGTGTCCGCCGGTACGTAGCCAAGT
ACACGATCAATCCTGCCATCGCCCACGGGATGAGCCACGTGATCGGCTCC
GTCGAGGTAGGGAAATGGGCGGATTTGGTCCTCTGGTCCCCTGCcttttt
tggcgcgaaaccCGAGATGGTCTTgaaaggaggggtggtggcCTGGTCCC
AGATGGGGGACGCGAACGGCTCCATCCCCACGCCGGAACCCGTCATCATG
CGGCCCATGTACGGCGCTACCCCGGGAGGTTTGGGTGAGGCCTGTCTCGC
CTTTGTCAGCCAGAAGAGCGTGGAGACGGGGAGAGCATCCGCGTTGGGCT
TAAGGAAGCgggtggaggccgtgagGGGAAACCGGATGGTGGGTAAGAGG
GACATGAAGTTGAACGACGCCCTTCCCAAGATCAAAGTGGACCCAGAGAC
CTTCCGTGTGACGGCCGACGGTGTGCACTTGACGTGCGAGCCATTGGAGG
TGCTCCCGCTGGCGCAGCGCTACTACCTGTTCTGAGGCAAAGGCAGGCGG
TGTGGTGCTGGCGTTGACCAAGAGACAGAGGGGGACGCTTGGGGGTTGGA
CGATGCTGAATACGGTCGAGGACGTTTTATAAGGACGGGGAGCAAGTAAT
GTTAATCAGCTGAAGAAAAACTGTTCGAAAGCAAAACGAGAACATCTGTG
TTGTGAGGGGAT

Coding sequence (CDS) from alignment at CM002455.1:1483008..1486119+

>rna594 ID=rna594|Name=rna594|organism=Nannochloropsis gaditana|type=CDS|length=5328bp|location=Sequence derived from alignment at CM002455.1:1483008..1486119+ (Nannochloropsis gaditana)
ATGCGACTCTCGCCTCGTGAAGTAGACAAATTACTGCTTCAGCAGGTGGG
CTTGCTCGCACAAAGACGTCTGGCCAGGGGCCTCCGTTTGAATCACCCAG
AATGCACCGCTTTGATAGCCACAGTTCTCATAGAAATGATGCGAGACGGG
AATAAAACCTGCGCGGAGCTCATGGATCTAGGTCGTTGTATTCTTGGACA
TCGGCAAGTCCTCCCGGGGATCGCATGCATGGTGGAAGAAATTCAGATCG
AAGGGACCTTCCCGGACGGCACCAAGTTGGTGACAGTGCATGAGCCCATT
TCCCGCTTGGACGGGGAATTACAACTGGCACTGTATGGAAGTTTCCTGCC
TATACCATCCCTCGACCTTTTCACGCCCCCATCATCAGCGtacttggagg
gaggggaggggaaggaggaggcggagcaggaggaagaggaggccttggGT
CATTTTTTAACGCCACCAGGGGCAACTTGGAACGTGAACGAAGGACGGGA
AATCACAGCATTGCGGGTCACGAATATGGCAGATCGTCCGATCCAGGTGG
GCTCGCATTACCATTTCATTGAGACCAACCCGTATTTGTGCTTTGACCGT
GCTCGCGCCTACGGCAAACGTCTGAATATTTTGGCGGGCACGGCCGTCAG
GTTCGAGCCCGGAGAGACGAAGACTGTGGCGTTGGTGGAGATAGCGGGGA
AGAAAGTGGTACGGGGGGGCAATAGTTTGTGTGACGGGCCGGTAGAGGCA
GGTAAAATCGCAGGCATTGTGGAGGGCTTGATGAAGAAAGGTTTCCTGCA
CGAGCcccaggacgagggggaggaaggggccgagggagggaaggaggacg
agggggagggaagaaagcggaggaagactaACGTGCTGGCACCCTTGACC
GTGTGCCGGGCGCACTACTCGCATTTTTACGGGCCGAGCGTTGGGGACGT
GGTGCGGTTGGGCGACACCGCCTTGTACGTCCGGGTCGAGCGAGACTTGA
CGTGGCCCGTGGGCGATGAATGTAAATTcggcggggggaaggtgatCCGG
GAAGGGATGGGCCAGGCGACGTTGGAGACGGAGACGTGCTTGGAAACCGT
GTTGACGAACGCGCTGGTGGTGGACTACACGGGCATCTACAAGGCAGATG
TGGGTCTGCGGGGACATCGGATCGTCGGGATCGGGAAAGCGGGAAACCCC
GACATGATGGCGAACGTGACGCCCGGCATGGTGATTGGGGTAGGCACGGA
TGTGATTGCGGCGGAAGGGATGATTTTGACGGCGGGGGGTATGGACGCCC
ACGTGCACTTTATTTGTCCCCAGCAGGCGGACGATGCCCTCGCCTCTGGA
GTCACAACCTTCGTAGGGGGCGGCACGGGCCCGAGCACAGGCACCAAGGC
CACCACCTGCACGCCTGCCCCGGCCCATGTCGCCTTCATGCTGCAGAGCA
CGGACAGCATCCCCCTCAACATTGGGCtgacggggaaagggaacaCGAGT
CGGccggagggcttggaggcggtggtggaggcgggggcgatcGGGCTCAA
GCTCCACGAGGACTGGGGAACGACGCCGGCGGCGATCGATTGCTGCCTGG
GCGTGGCCGAGAGGATGGACGTGCAGGTGACGATCCACACGGATACCCTC
AACGAAGCGGGGTGCGTGGAGCATTCCATCGCCGCTTTTAAAGGCCGGAC
CATCCACACCTACCACAgcgaaggggcggggggggggcacgcccCAGACA
TCATCTCGGTGTGCGGGGAGCCGAACGtgctgccttcctccacgaacCCC
ACCAAACCGTACACCAAAAACACGGTGGACGAGCATGTGGACATGCTAAT
GGTCTGCCACCATTTGGACTCGTGCATCCCGGAAGATGTGGCCTTTGCCG
ACTCCCGGATCCGCGGGGAAACCATCGCTGCCGAAGATATCCTCCACGAC
CTGGGAGCGATTTCCATCATTTCGTCGGATTCTCAGGCCATGGGGCGGGT
GGGCGAGGTGATCACACGCACCTGGCAAACAGCCCACAAGATGCGGCTGC
AACGGGGACAACTgcaggaggaccaggagcgggaggaggaatggacgcgg
caggaggaagggaacggatGGGCGTTGCCGCCTGGCGTGACCACCGAGAA
TTTCCGTGTCCGCCGGTACGTAGCCAAGTACACGATCAATCCTGCCATCG
CCCACGGGATGAGCCACGTGATCGGCTCCGTCGAGGTAGGGAAATGGGCG
GATTTGGTCCTCTGGTCCCCTGCcttttttggcgcgaaaccCGAGATGGT
CTTgaaaggaggggtggtggcCTGGTCCCAGATGGGGGACGCGAACGGCT
CCATCCCCACGCCGGAACCCGTCATCATGCGGCCCATGTACGGCGCTACC
CCGGGAGGTTTGGGTGAGGCCTGTCTCGCCTTTGTCAGCCAGAAGAGCGT
GGAGACGGGGAGAGCATCCGCGTTGGGCTTAAGGAAGCgggtggaggccg
tgagGGGAAACCGGATGGTGGGTAAGAGGGACATGAAGTTGAACGACGCC
CTTCCCAAGATCAAAGTGGACCCAGAGACCTTCCGTGTGACGGCCGACGG
TGTGCACTTGACGTGCGAGCCATTGGAGGTGCTCCCGCTGGCGCAGCGCT
ACTACCTGTTCTGAATGCGACTCTCGCCTCGTGAAGTAGACAAATTACTG
CTTCAGCAGGTGGGCTTGCTCGCACAAAGACGTCTGGCCAGGGGCCTCCG
TTTGAATCACCCAGAATGCACCGCTTTGATAGCCACAGTTCTCATAGAAA
TGATGCGAGACGGGAATAAAACCTGCGCGGAGCTCATGGATCTAGGTCGT
TGTATTCTTGGACATCGGCAAGTCCTCCCGGGGATCGCATGCATGGTGGA
AGAAATTCAGATCGAAGGGACCTTCCCGGACGGCACCAAGTTGGTGACAG
TGCATGAGCCCATTTCCCGCTTGGACGGGGAATTACAACTGGCACTGTAT
GGAAGTTTCCTGCCTATACCATCCCTCGACCTTTTCACGCCCCCATCATC
AGCGtacttggagggaggggaggggaaggaggaggcggagcaggaggaag
aggaggccttggGTCATTTTTTAACGCCACCAGGGGCAACTTGGAACGTG
AACGAAGGACGGGAAATCACAGCATTGCGGGTCACGAATATGGCAGATCG
TCCGATCCAGGTGGGCTCGCATTACCATTTCATTGAGACCAACCCGTATT
TGTGCTTTGACCGTGCTCGCGCCTACGGCAAACGTCTGAATATTTTGGCG
GGCACGGCCGTCAGGTTCGAGCCCGGAGAGACGAAGACTGTGGCGTTGGT
GGAGATAGCGGGGAAGAAAGTGGTACGGGGGGGCAATAGTTTGTGTGACG
GGCCGGTAGAGGCAGGTAAAATCGCAGGCATTGTGGAGGGCTTGATGAAG
AAAGGTTTCCTGCACGAGCcccaggacgagggggaggaaggggccgaggg
agggaaggaggacgagggggagggaagaaagcggaggaagactaACGTGC
TGGCACCCTTGACCGTGTGCCGGGCGCACTACTCGCATTTTTACGGGCCG
AGCGTTGGGGACGTGGTGCGGTTGGGCGACACCGCCTTGTACGTCCGGGT
CGAGCGAGACTTGACGTGGCCCGTGGGCGATGAATGTAAATTcggcgggg
ggaaggtgatCCGGGAAGGGATGGGCCAGGCGACGTTGGAGACGGAGACG
TGCTTGGAAACCGTGTTGACGAACGCGCTGGTGGTGGACTACACGGGCAT
CTACAAGGCAGATGTGGGTCTGCGGGGACATCGGATCGTCGGGATCGGGA
AAGCGGGAAACCCCGACATGATGGCGAACGTGACGCCCGGCATGGTGATT
GGGGTAGGCACGGATGTGATTGCGGCGGAAGGGATGATTTTGACGGCGGG
GGGTATGGACGCCCACGTGCACTTTATTTGTCCCCAGCAGGCGGACGATG
CCCTCGCCTCTGGAGTCACAACCTTCGTAGGGGGCGGCACGGGCCCGAGC
ACAGGCACCAAGGCCACCACCTGCACGCCTGCCCCGGCCCATGTCGCCTT
CATGCTGCAGAGCACGGACAGCATCCCCCTCAACATTGGGCtgacgggga
aagggaacaCGAGTCGGccggagggcttggaggcggtggtggaggcgggg
gcgatcGGGCTCAAGCTCCACGAGGACTGGGGAACGACGCCGGCGGCGAT
CGATTGCTGCCTGGGCGTGGCCGAGAGGATGGACGTGCAGGTGACGATCC
ACACGGATACCCTCAACGAAGCGGGGTGCGTGGAGCATTCCATCGCCGCT
TTTAAAGGCCGGACCATCCACACCTACCACAgcgaaggggcggggggggg
gcacgcccCAGACATCATCTCGGTGTGCGGGGAGCCGAACGtgctgcctt
cctccacgaacCCCACCAAACCGTACACCAAAAACACGGTGGACGAGCAT
GTGGACATGCTAATGGTCTGCCACCATTTGGACTCGTGCATCCCGGAAGA
TGTGGCCTTTGCCGACTCCCGGATCCGCGGGGAAACCATCGCTGCCGAAG
ATATCCTCCACGACCTGGGAGCGATTTCCATCATTTCGTCGGATTCTCAG
GCCATGGGGCGGGTGGGCGAGGTGATCACACGCACCTGGCAAACAGCCCA
CAAGATGCGGCTGCAACGGGGACAACTgcaggaggaccaggagcgggagg
aggaatggacgcggcaggaggaagggaacggatGGGCGTTGCCGCCTGGC
GTGACCACCGAGAATTTCCGTGTCCGCCGGTACGTAGCCAAGTACACGAT
CAATCCTGCCATCGCCCACGGGATGAGCCACGTGATCGGCTCCGTCGAGG
TAGGGAAATGGGCGGATTTGGTCCTCTGGTCCCCTGCcttttttggcgcg
aaaccCGAGATGGTCTTgaaaggaggggtggtggcCTGGTCCCAGATGGG
GGACGCGAACGGCTCCATCCCCACGCCGGAACCCGTCATCATGCGGCCCA
TGTACGGCGCTACCCCGGGAGGTTTGGGTGAGGCCTGTCTCGCCTTTGTC
AGCCAGAAGAGCGTGGAGACGGGGAGAGCATCCGCGTTGGGCTTAAGGAA
GCgggtggaggccgtgagGGGAAACCGGATGGTGGGTAAGAGGGACATGA
AGTTGAACGACGCCCTTCCCAAGATCAAAGTGGACCCAGAGACCTTCCGT
GTGACGGCCGACGGTGTGCACTTGACGTGCGAGCCATTGGAGGTGCTCCC
GCTGGCGCAGCGCTACTACCTGTTCTGA

Synonyms

Publications