rna5939, rna5939 (mRNA) Nannochloropsis gaditana

Overview
Namerna5939
Unique Namerna5939
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationCM002467.1:158619..159137 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100513g1.7563.mrna
Orig protein idgnl|cribi|Naga_100513g1.7563
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:158619..159137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100513g1gene5737Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5939rna5939-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24748.1cds5924Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5939 ID=rna5939|Name=rna5939|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGGACAAATTTGTCAGGCGCCTATCCTCCTCAGCAAAGCCAAACGTGGT
CAGAGAGGATGACCGTGCACCTCCATTAAACAAGGAGAGCGAGAACGACG
ACATCCCCTTTGCCATAGAGGCCCCGGGCAGTCGACGGATCCTGTACTTC
TCCGACTCGGAGAGCGATTGCAGTCAGATTTCCTCGGAATGCACGCCTCA
AAGCAGCCTTGAGACGCCTGTGTCTTCCATTTCTGAGGACCTGGCCGCCT
CCCGGACATTGAACGATGCCACCCGGGTCCTCCGGGACTGA
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protein sequence of rna5939

>rna5939-protein ID=rna5939-protein|Name=rna5939|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MLCCQPQRVSVQDVCAGREAQSDDEPNGRDATAGDGFRSGRQGIGRTGKK
KEMVGALTRRCCSAVSLVLDDLITGKRMSQRKECRLSFMNSRAV
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mRNA from alignment at CM002467.1:158619..159137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5939 ID=rna5939|Name=rna5939|organism=Nannochloropsis gaditana|type=mRNA|length=519bp|location=Sequence derived from alignment at CM002467.1:158619..159137+ (Nannochloropsis gaditana)
ATGTTGTGCTGTCAGCCTCAAAGGGTCTCGGTGCAGGACGTCTGTCATCT
ATTTTGTCCCTCCTGGGTCCGTGTGTAGGTGCGTGTGCGTGAGCATAGTT
TCCTTGCTGCCCATCTTCTCCtacttccttcttcccagtGCGCGGGTCTC
CCGCAGGCACTCAGCGCTCgttgcctccccctcttgcccccctGTTCCGT
TCCTGCGGTTCGCTTGACCTCCTTCGTCTTGTCTCCCAACCCTATACATc
accccccaccctccctatCATTATCAGGCGCGGGCCGAGAAGCTCAGTCG
GATGACGAACCAAACGGAAGGGATGCAACAGCGGGCGATGGATTTCGcag
cggccgccaaggcATTGGCCGaacgggaaaaaagaaggaaatggTGGGAG
CTTTGACGAGAAGATGCTGCAGCGCAGTGAGCCTGGTCTTAGATGATTTA
ATCacagggaaaaggatgagCCAGCGCAAAGAATGTAGACTTAGTTTTAT
GAATTCCCGTGCTGTCTAG
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Coding sequence (CDS) from alignment at CM002467.1:158619..159137+

>rna5939 ID=rna5939|Name=rna5939|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002467.1:158619..159137+ (Nannochloropsis gaditana)
ATGTTGTGCTGTCAGCCTCAAAGGGTCTCGGTGCAGGACGTCTGCGCGGG
CCGAGAAGCTCAGTCGGATGACGAACCAAACGGAAGGGATGCAACAGCGG
GCGATGGATTTCGcagcggccgccaaggcATTGGCCGaacgggaaaaaag
aaggaaatggTGGGAGCTTTGACGAGAAGATGCTGCAGCGCAGTGAGCCT
GGTCTTAGATGATTTAATCacagggaaaaggatgagCCAGCGCAAAGAAT
GTAGACTTAGTTTTATGAATTCCCGTGCTGTCTAGATGTTGTGCTGTCAG
CCTCAAAGGGTCTCGGTGCAGGACGTCTGCGCGGGCCGAGAAGCTCAGTC
GGATGACGAACCAAACGGAAGGGATGCAACAGCGGGCGATGGATTTCGca
gcggccgccaaggcATTGGCCGaacgggaaaaaagaaggaaatggTGGGA
GCTTTGACGAGAAGATGCTGCAGCGCAGTGAGCCTGGTCTTAGATGATTT
AATCacagggaaaaggatgagCCAGCGCAAAGAATGTAGACTTAGTTTTA
TGAATTCCCGTGCTGTCTAG
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Synonyms
Publications