rna5938, rna5938 (mRNA) Nannochloropsis gaditana

Overview
Namerna5938
Unique Namerna5938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1427
Alignment locationCM002467.1:155435..156117 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100825g2.6632.mrna
Orig protein idgnl|cribi|Naga_100825g2.6632
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:155435..156117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100825g2gene5736Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5938rna5938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24752.1cds5923Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5938 ID=rna5938|Name=rna5938|organism=Nannochloropsis gaditana|type=mRNA|length=1427bp
GGCGACTCCCTCCTGGTCGCCCCCGTCCTCCAACCTCATCACCGACGGCA
AACGCTGTACCTCCCTCGCGCCCCCCCCGGGCCAGGACAATGGCACCCGC
CCTTCCTCGGTCCCGCCCTCCCTCCCTCCCTCCCTCACGTGGGTGGATGT
CTCCTCCTCCCTTCAGTACGACGAAGACGACGGACGTTTCCGCCTGGGGG
GAGGCGGGTCTTGGCTGGAGGGTGGCCAGGTAGAGGGAGGGGGAGAGGAA
GAGGAAGGGGGGGAGGAAGGGAATGAGGGGGGAGAGAGGGAGGACCGCGT
GGATCGGACGAGAGGGACAGGGCCTGGTGGGGTTTCTGGTCTCTCTCGGC
CTTTTTGTCCGCTTTGGCTCGGAGTTTTCCCCCCTCTTTGGTGACCCCCC
CCCTCGCCTTTCCTGCCTCCCTTCCGCGCCATGCTCGCTCCCTCGTGTTG
GACGTTGCGGTCGAAGGATACGATTGTAACGGTCAACTCCTTCTTTTTTG
TTTTCTCTGTCCTTTTCTCACGACGGTGTGCACACGCGCGGTACTCCTTC
CCTTCCCGTCGTCCACGTCGTGATTCCCTCGCCCTGGCTCTGCGGACCGA
CCGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCCCTCC
AGACGCTCTCCGTTCCTGCCCCTCTCGATACGATCCCGATGTTCGTTGTG
GCCGGGACCGTACTGCCCACCCTCGACCCAACGGTCTCCTCGATGAGCGA
GGAGGAGGGAGGGAAAGAGGGGAGGAGGAGGACGTACGGAGGCATGCGGC
ACATTTTGCACCTCTGGGCATGGATGGATGACGAGTGGAGGGCCACCTCG
GGAAGCCAGTGGGACGGGGGGAACTACCACGTCCGCCCTCTCCTTCCCTC
TGCCCCTTCCTCTCCTGGCATCACCCTCCTCTGCACCTTCCTCCCCCCGC
ATCTGCATGATCCCCCCCCCTTCACGACCTTCATCCTCCAATTGACTCGT
CCCAAACCCTCACGGGAAAAGGGAGGAACGGAGAAGAAGTGGAGTGTGAA
GGAGGTGCGGCGCCTGATGTCGGGAGAGGGGGTAGAGGGAGAAGGTGTAA
TTGTGGTGAGAAAAGTAGAAGGGAGCAGGGGTGGAAGTGGGTGGGAGGAG
GTTGTTAAGGTGAGGGAGAGAGGAAGGTTCAGGAAAGATGAAGTGGAGGA
TTTGTGGACCGAAGACGAGGGACAAGGCGTGTTCTGGTTGCGGGTGACGT
CGTCCGCCATGGAAAAGGGAGGGAAGGGAGATGCTGAGGCGGTTAGGGTG
CTAGTAATGTTGTACGATGAGGATTGGTACGTCGAGGGGGAGAATTCATC
GGAAAGCAAGCAATGAAAGTAAATTGTATAATATGAAACGCGAAGTACAA
GCTAAAAATCGGAGTGAAATTTTCTGG
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protein sequence of rna5938

>rna5938-protein ID=rna5938-protein|Name=rna5938|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MDKFVRRLSSSAKPNVVREDDRAPPLNKESENDDIPFAIEAPGSRRILYF
SDSESDCSQISSECTPQSSLETPVSSISEDLAASRTLNDATRVLRD
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mRNA from alignment at CM002467.1:155435..156117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5938 ID=rna5938|Name=rna5938|organism=Nannochloropsis gaditana|type=mRNA|length=683bp|location=Sequence derived from alignment at CM002467.1:155435..156117+ (Nannochloropsis gaditana)
ATGGACAAATTTGTCAGGCGCCTATCCTCCTCAGCAAAGCCAAACGTGGT
CAGAGAGGATGACCGTGCACCTCCATTAAACAAGGAGAGCGAGAACGGTA
AGAAACCCAGATACTCAGGATATATAAATCAGTTGTCAAAACAATATCAA
AATCTGATAGAAAAAAACACTGCGGCGGTGTAAACAGTCAAAGTAGTAAC
TTTAAATGTTCCCTGATCCCTCTTTCACCATCAGTTCCTTGATTAGGCAG
CGGATGCTTTCAATCACTTAATATTTAcactttttctcccttcctttttt
ttcttcttccttctaTTACGTCTTATCTCTTCCTGTCATCGCATAGACGA
CATCCCCTTTGCCATAGAGGCCCCGGGCAGTCGACGGATCCTGTACTTCT
CCGACTCGGAGAGCGATTGCAGTCAGATTTCCTCGGAATGCACGCCTCAA
AGCAGCCTTGAGACGCCTGTGTCTTCCATTTCTGAGGacctggccgcctc
ccggaCATTGAACGATGCCACCCGGGTCCTGTCCGTTTCTTCCACGCGCG
TGTTCTCCAAgaccccgtcgtcctcctctctcaccaCCACTCCCTttacc
gcctccctccgggcaTTGCCCTCCATCCGGGAGGACGCAGCCATCACGGC
AGCGGCCATGGGTGTTACAACAGCCGGGACTGA
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Coding sequence (CDS) from alignment at CM002467.1:155435..156117+

>rna5938 ID=rna5938|Name=rna5938|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at CM002467.1:155435..156117+ (Nannochloropsis gaditana)
ATGGACAAATTTGTCAGGCGCCTATCCTCCTCAGCAAAGCCAAACGTGGT
CAGAGAGGATGACCGTGCACCTCCATTAAACAAGGAGAGCGAGAACGACG
ACATCCCCTTTGCCATAGAGGCCCCGGGCAGTCGACGGATCCTGTACTTC
TCCGACTCGGAGAGCGATTGCAGTCAGATTTCCTCGGAATGCACGCCTCA
AAGCAGCCTTGAGACGCCTGTGTCTTCCATTTCTGAGGacctggccgcct
cccggaCATTGAACGATGCCACCCGGGTCCTCCGGGACTGAATGGACAAA
TTTGTCAGGCGCCTATCCTCCTCAGCAAAGCCAAACGTGGTCAGAGAGGA
TGACCGTGCACCTCCATTAAACAAGGAGAGCGAGAACGACGACATCCCCT
TTGCCATAGAGGCCCCGGGCAGTCGACGGATCCTGTACTTCTCCGACTCG
GAGAGCGATTGCAGTCAGATTTCCTCGGAATGCACGCCTCAAAGCAGCCT
TGAGACGCCTGTGTCTTCCATTTCTGAGGacctggccgcctcccggaCAT
TGAACGATGCCACCCGGGTCCTCCGGGACTGAATGGACAAATTTGTCAGG
CGCCTATCCTCCTCAGCAAAGCCAAACGTGGTCAGAGAGGATGACCGTGC
ACCTCCATTAAACAAGGAGAGCGAGAACGACGACATCCCCTTTGCCATAG
AGGCCCCGGGCAGTCGACGGATCCTGTACTTCTCCGACTCGGAGAGCGAT
TGCAGTCAGATTTCCTCGGAATGCACGCCTCAAAGCAGCCTTGAGACGCC
TGTGTCTTCCATTTCTGAGGacctggccgcctcccggaCATTGAACGATG
CCACCCGGGTCCTCCGGGACTGA
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Synonyms
Publications