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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100825g1.6631.mrna |
| Orig protein id | gnl|cribi|Naga_100825g1.6631 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:153134..154761 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5936 ID=rna5936|Name=rna5936|organism=Nannochloropsis gaditana|type=mRNA|length=2435bp
ACTTTGACATACCAACTTGAGAAGAAGCACACAGACATGTTTGTTGGCAC
GTTTTGGGTTGTGTAAGGTCCCAGCATCACAAGTGAAGTAGCGACGTGAG
GAACAAAGCGAGAGCTGCCTCCTGAATTCCCCTTTGACTTTCGACGGGTT
TGCGTCTGTCCATGGTACTTTTCAATATTATTGCGTTAAGCCAGGCTCTG
TAGACGACTTATTTTCATGTACCCTGGCGCATACGTCCACAGTTCCCACA
TATCAAAGTCAACATGGCATCGGCACCATCAAGCAGCGACTCAACGAAGC
CAGGTTTCCTGGATACTCTACCCCCGGTCGTGCGCGCGTTCGTCTTGGGG
GCTGTGGCGTTGCACGTGGTCGCCTTCGTAGTCTGGGGCGTATTGTTGAT
GAGGGAGCAGCGGCAGGGCAAAGTGAAGAGCAAAGAGTTTTGAGAGAGGG
GCTGTTGCACAAGGGAGTCGAAATGTTCGACTCGAGGCAGTATGGAAAGA
GCGTAAATGTGTAATCTTTAGCTGATGGAAAAGTTGAAATGCCAAGCAAG
ACGGAACGAGGCGGCGTAGGTGCAGACATGGGCGGGAAAACGAGCGTGTA
AAGAGTAGCACTAGCGTGGGGTGGAACAAGGAAAGGAGGGCCTAGCCTAA
CGGGAGATCGACCAGGCGTAGACATGATCAATACATTCGTCCGTAGAGAC
ACCGAGAGACCCGCGCGCCGACCTGGATTAAAGTCATTCGCATGCTTTTT
AAAGGCAGGAGACACGGTCAATGCCACGCAGAGAAGCACCGCACTTATTT
TCAGTTCTGAAGTCGCCGAGTACCAAGCATGCTGTCTTAGCCTTTCCCCT
CTCAGAGTGACCCCCCTTCCAGTGTTCCCCCCAGCCAGGTCCTCCACTCC
TTTCATCTCCCCCCACCTTCCTCCTCACTCCACATCCATCATTTCCCGTC
ATTCATGCTTCCCTTTCCCCCCCTTCCCTGACCTCCTCCCCGCCCGGACC
GACAGGGGCCGCCGCTGCCACGCCCGGCCGACCCAAGCTGCGGTCAAAGC
CGCCAATCCGAGGCTCCTCAGCCTTCCTTTCCAACGCTGACACATCCCTG
CCATGTCCTCCTCACTCGACGAGCAACGCGCCGCGCGTGCCATGTCGCAT
TTGTCTGTCTCTGGACGCAAATGGCAGGCAGGGCACCCCCACGCCCGCCA
TAGGCCCCATTCCTCCGCCTGCGCTACGGCCACGCACCCCACGGCCAAAA
CCAGGAGCAAGCCAAAGACCCACTGGGTCGGGTGGGAGGTCGTGGCTCCA
AAGCACCATGCGAAAGACCTTGCCCCCGCCATGCACCCGGGCGTCGAGGA
AAGATTCTGGTTGTGCCTCCACTGCGATGCCCAATTCTATGCTGTCCCTG
GCCAAGACGACCTGCCACAGGCGACCGCCACAAGCAGGGTGGCCCGAGAG
GGCAGCTTTGAGGGCCACGCTGGCTTTCACAGGCTCTCCCTCGGCGTTGT
GCAGAGCGTGCGTGGCCAAAGCCAAAAGGAGGGACAGGGAGGGCGTGGAA
TGTAGTGGTGGGGAGCCTTCATGCCCCTCGGAAGGGAGATTGGTGCGGTA
GACGAGCGTCTTCCGTGAGGTCACTGGAAGAGGGGAAGGGCAGGGGGCAG
AGGGCGAGGGAGGACGCGGCGAGGATTGAAAAACGAGAGCCCGGAGCTGG
TGGTGTGTGTTTGCGAAGAGGAAGCAGCGGGCAGGCGGTGGACGGGAGCG
GTAGCGGATATTGGTTACGAAGTCATGTGGGCCGATGAGAACGTGCCAAG
GGCTTGATGTGTACGCATCCAACCACCGTTTTAAGGCCAACGCTGTCTGA
TCCTTATCATAAGGCTTTCCTTTGACGCTTGTCCACAGCTCGTTCAGTTG
GATGTGCATTTTTCTGAGCGTTGAAAGATGATGGGAAAACGCAGCGTAAG
GAGGAGGTTGTATGCCAGTGAGCTTATAGCAAGACCGTTGAAACCCACTT
TCTCACCGAAGTAGGACACCTGACACGCCACTGAGTGTTTCCCATGACGA
TGTTGGAGCTGGTGGCTTTCTTGTGGCCGGCATGGCCGCGCTTTCATCTG
CAAAGTCATGTATAGGACATGGCATGGGGTGGGATCAGAGCACTGACGTA
CACGTTCGTGAATTGCTTGCGGTAACGGCCTAGAAATGACGCTTTTGATA
AAGAAAGCAAAAGACAGGTTCTTTGAAAAGCAATGGCTGCGGTTTGTTGT
TATGGGTTTAACTCGATATGCCACCTCCTTCGTTTTTTATAATTTTGCTT
GCAAATGTTCTTGGATGGAGTCAAGCATTGGGTCGAGGTCAAGCCATTGG
GGGCCTCCACCGACAGTGAGATTACGGGAAGCTTTTACAACTCTCGCCGC
GTCCACAAAGGGAAATATTGCTTATCAGGAAGGAA back to topprotein sequence of rna5936 >rna5936-protein ID=rna5936-protein|Name=rna5936|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEW
RATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFIL
QLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGS
GWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAE
AVRVLVMLYDEDWYVEGENSSESKQ back to topmRNA from alignment at CM002467.1:153134..154761+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5936 ID=rna5936|Name=rna5936|organism=Nannochloropsis gaditana|type=mRNA|length=1628bp|location=Sequence derived from alignment at CM002467.1:153134..154761+ (Nannochloropsis gaditana)
CGGCGACTCCCTCCTggtcgcccccgtcctccaaccTCATCACCGACGGC
AAACGCTGtacctccctcgcgccccccccgggccaGGACAATGgcacccg
cccttcctcggtcccgccctccctccctccctccctcacgtgGGTGgatg
tctcctcctcccttcagTACGACGAAGACGACGGACGTTTCCgcctgggg
ggaggcgggtcTTGGCTGGAGGGTGGCcaggtagagggagggggagagga
agaggaagggggggaggaagggaatgaggggggagagagggaggaccgCG
TGGATCGGAcgagagggacagggccTGGTGGGGTTTCTGGTCTCTCTCGG
CCTTTTTGTCCGCTTTGGCTCGGagttttcccccctctttggtgaccccc
cccctcgcctttcctgcctcccttccgcgcCATGCTCGCTCCCTCGTGTT
GGACGTTGCGGTCGAAGGATACGATTGTAACGGTcaactccttctttttt
gttTTCTCTGTCCTTTTCTCACGACGGTGTGCACACGCGCGgtactcctt
cccttcccgtcgtCCACGTCGTGATTCCCTCGCCCTGGCTCTGCGGACcg
accgcccctccctccctccctccctccctccctccctccctgcctccctc
cagacgCTCTCCGTTCCTGCCCCTCTCGATACGATCCCGATGTTCGTTGT
GGCCGGGACCGTACTGCCCACCCTCGACCCAACGGTCTCCTCgatgagcg
aggaggagggagggaaagaggggaggaggaggacgtacGGAGGCATGCGG
CACATTTTGCACCTCTGGGCATGGATGGATGACGAgtggaggtgagggag
ggaggggaggagggaggaagggggaagggaggaagggggggaaggggggg
aagtcTGGCCCGGAAAAGGGGGGCGGCGGGTCGGTAcgtgaaggggaaag
gacggagggacagggcggACTGGGTCATTTAGAAAGAGACGCATTATGTG
TGTGGCTTTGATCTCTGAccctaccctcctcctcaccccagGGCCACCTC
GGGAAGCCagtgggacggggggaacTACCAcgtccgccctctccttccct
ctgccccttcctctcctggcatcaccctcctctgcaccttcctccccccg
catcTGCatgatcccccccccttcacgACCTTCATCCTCCAATTGACTCG
TCCCAAACCCTCacgggaaaagggaggaacggagaaGAAGTGGAGTGTGA
AGGAGGTGCGGCGCCTGATGTCGGGAGAGGGggtagagggagaaggtgta
ATTGTGGTGAGAAAAGTAGAAGGGAGCAGGGGTGGAagtgggtgggagga
ggttgttaaggtgagggagagaggaaggttCAGGAAAGATGAAGTGGAGG
ATTTGTGGACCGAAGACGAGGGACAAGGCGTGTTCTGGTTGCGGGTGACG
TCGTCCGccatggaaaagggagggaagggagatgcTGAGGCGGTTAGGGT
GCTAGTAATGTTGTACGATGAGGATTGGTACGTCGAGGGGGAGAATTCAT
CGGAAAGCAAGCAATGAAAGTAAATTGTATAATATGAAACGCGAAGTACA
AGCTAAAAATCGGAGTGAAATTTTCTGG back to topCoding sequence (CDS) from alignment at CM002467.1:153134..154761+ >rna5936 ID=rna5936|Name=rna5936|organism=Nannochloropsis gaditana|type=CDS|length=1356bp|location=Sequence derived from alignment at CM002467.1:153134..154761+ (Nannochloropsis gaditana)
ATGTTCGTTGTGGCCGGGACCGTACTGCCCACCCTCGACCCAACGGTCTC
CTCgatgagcgaggaggagggagggaaagaggggaggaggaggacgtacG
GAGGCATGCGGCACATTTTGCACCTCTGGGCATGGATGGATGACGAgtgg
agGGCCACCTCGGGAAGCCagtgggacggggggaacTACCAcgtccgccc
tctccttccctctgccccttcctctcctggcatcaccctcctctgcacct
tcctccccccgcatcTGCatgatcccccccccttcacgACCTTCATCCTC
CAATTGACTCGTCCCAAACCCTCacgggaaaagggaggaacggagaaGAA
GTGGAGTGTGAAGGAGGTGCGGCGCCTGATGTCGGGAGAGGGggtagagg
gagaaggtgtaATTGTGGTGAGAAAAGTAGAAGGGAGCAGGGGTGGAagt
gggtgggaggaggttgttaaggtgagggagagaggaaggttCAGGAAAGA
TGAAGTGGAGGATTTGTGGACCGAAGACGAGGGACAAGGCGTGTTCTGGT
TGCGGGTGACGTCGTCCGccatggaaaagggagggaagggagatgcTGAG
GCGGTTAGGGTGCTAGTAATGTTGTACGATGAGGATTGGTACGTCGAGGG
GGAGAATTCATCGGAAAGCAAGCAATGAATGTTCGTTGTGGCCGGGACCG
TACTGCCCACCCTCGACCCAACGGTCTCCTCgatgagcgaggaggaggga
gggaaagaggggaggaggaggacgtacGGAGGCATGCGGCACATTTTGCA
CCTCTGGGCATGGATGGATGACGAgtggagGGCCACCTCGGGAAGCCagt
gggacggggggaacTACCAcgtccgccctctccttccctctgccccttcc
tctcctggcatcaccctcctctgcaccttcctccccccgcatcTGCatga
tcccccccccttcacgACCTTCATCCTCCAATTGACTCGTCCCAAACCCT
CacgggaaaagggaggaacggagaaGAAGTGGAGTGTGAAGGAGGTGCGG
CGCCTGATGTCGGGAGAGGGggtagagggagaaggtgtaATTGTGGTGAG
AAAAGTAGAAGGGAGCAGGGGTGGAagtgggtgggaggaggttgttaagg
tgagggagagaggaaggttCAGGAAAGATGAAGTGGAGGATTTGTGGACC
GAAGACGAGGGACAAGGCGTGTTCTGGTTGCGGGTGACGTCGTCCGccat
ggaaaagggagggaagggagatgcTGAGGCGGTTAGGGTGCTAGTAATGT
TGTACGATGAGGATTGGTACGTCGAGGGGGAGAATTCATCGGAAAGCAAG
CAATGA back to top
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