EWM24751.1, cds5921 (CDS) Nannochloropsis gaditana

Overview
NameEWM24751.1
Unique Namecds5921
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:153823..153974 +
Alignment locationCM002467.1:154175..154700 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24751.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100825g1.6631.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:153823..153974 +
CM002467.1supercontigCM002467.1:154175..154700 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24751.1 vs. NCBI_GenBank
Match: gi|585106297|gb|EWM24750.1| (hypothetical protein Naga_100825g1 [Nannochloropsis gaditana])

HSP 1 Score: 455.677 bits (1171), Expect = 8.354e-161
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 
Query:    1 MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ 225
            MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ
Sbjct:   87 MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ 311
[Close]
BLAST of EWM24751.1 vs. NCBI_GenBank
Match: gi|585106298|gb|EWM24751.1| (hypothetical protein Naga_100825g1 [Nannochloropsis gaditana])

HSP 1 Score: 452.21 bits (1162), Expect = 1.036e-160
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 
Query:    1 MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ 225
            MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ
Sbjct:    1 MFVVAGTVLPTLDPTVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYHVRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGTEKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRFRKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWYVEGENSSESKQ 225
The following BLAST results are available for this feature:
BLAST of EWM24751.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106297|gb|EWM24750.1|8.354e-161100.00hypothetical protein Naga_100825g1 [Nannochloropsi... [more]
gi|585106298|gb|EWM24751.1|1.036e-160100.00hypothetical protein Naga_100825g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5936rna5936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications