rna5934, rna5934 (mRNA) Nannochloropsis gaditana

Overview
Namerna5934
Unique Namerna5934
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1203
Alignment locationCM002467.1:137613..138373 +

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Properties
Property NameValue
ProductRNA recognition motif domain protein
Orig transcript idgnl|cribi|Naga_100922g3.7983.mrna
Orig protein idgnl|cribi|Naga_100922g3.7983
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:137613..138373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100922g3gene5731Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5934rna5934-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24755.1cds5919Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5934 ID=rna5934|Name=rna5934|organism=Nannochloropsis gaditana|type=mRNA|length=1203bp
AGAGAATTCCGAGGGTCAGTCTGTGGATCGCTCCTTTTGAAAATGGGCAG
TTCGATAACAGATGTGGGAAATGGTGGAATCTTGAGACATCGCAGGACCT
CCCCGGCCCGTGCACCATCGATCCCTCAACTTTGAGGGAGCCCAGGAAGC
GGCGAATAGACTGGTCGCACTGTCTGAGTTTGTGAGCACCGCCTGCATAA
AATGCAATCCTGACACGCCTCCAAAAACAAATCCGAGTCTTGAGTGTTCA
AGCAGGGAAGCTTATTCTTCTGCCTCAGCCCCGGCTACGCACAGGGTTCT
TTTCCTCGCTGGATTCCAGGCAGGTCCGAACTCAGGACACAAAAATCGAA
GCCCCCACCTCCACGGACGTGAAGGAACGGGGAAAGCCATGGCCCCTGAT
GTCACCCTTGCCACGTGTTGACCTGATAGTGGTTGGCTCGGTGGCCGTGG
ATCCGGTCAGTGGGGCTCGGATCGGGAAAGGGGAGGGGTTTGCGGCCTTG
GAGCACGCCATGCTCCGGGCGCTGGATGTGACCGACGCCACCACGCCTGT
GGTGACAACAGCGGGACGAGCAGGTGGTGCCCGGAACGATACCCGGATTT
TGCGCCACGACGTGCCCGTGGACGTGATCATGACCTCTACGCAGACAATG
CGGACCCAGGCGGGGCGGCATTTGCCGGAAGCCTCGGGGATTTATTGGGA
GCTGCTTTCCCCGGAAAAATTGGGCTCGATTCGGGTTAAGCAGATTGGTG
TAAGGGGGCCAGAATGGGGGAAAAGGAAGGAAGAAAGGGCCGGATGCAAG
GAGGGAGAGAGGTCATGCCCCCAATCTGTGCTCTTGCGCCTCCCGGGCCG
GTCTTGCTTAGCGATTGCATGTATTCAAAGCCCCGCTTTTCTCTCCCTTG
GCGTCAATACTCTCAATCACCCGACCAGGGGCATTCGCCCACACGACTCG
CCCGCCCCCGCCGGCTTAGGAGCTGAAATCGCGCATTGAGAAGGAGGAAT
GTGAGCTAACCGACCGGGCCCTCCGAGATCCTCCCTCCTCTAGCTTCGAG
GGGAGGGAAGGGGCGAGGGCGGGAAGCAGGGGGGGGGGAGGAGATCTGGG
ACTTGTTCCTCCGGAGTCTGCTTTTTGTCGTATGCTAGGTAATGATGAGA
AAGAGTGGCCAGGGGCAGGAGGAGATGGGGGACTGGGACCGGCAGTGGAG
CGG
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protein sequence of rna5934

>rna5934-protein ID=rna5934-protein|Name=rna5934|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MPAPPPQVLPPLQPPRPPQPLQTGLHPAPYGQENVPTRFLYISGIGDALK
TDLKELRTLLEGYGPLDDSEGLGVEAPATKGFVRVRFIHVESAQRAKEAL
IGAEGEGREEAGGEGREGGVTVGGRRVNRVQYSVMWSEEEEVRGEEGGNA
GHGAAVLSGGWRVP
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mRNA from alignment at CM002467.1:137613..138373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5934 ID=rna5934|Name=rna5934|organism=Nannochloropsis gaditana|type=mRNA|length=761bp|location=Sequence derived from alignment at CM002467.1:137613..138373+ (Nannochloropsis gaditana)
GGTTTATCTTATCCCGCGACGCATAGAAAGCGACGAGCACAGCATGcccg
ctccacctccgcaggtcctcccgcccctccagcccccccgacCGCCGCAG
CCGTTGCAAACGGGGCTACACCCAGCACCTTACGGTCAAGAAAATGTTCC
CACACGCTTCCTTTACATATCTGGCATCGGAGATGCGTTAAAGACGGACT
TGAAGGTACGTTAGGCCAGCTAGTATGAGCGAAGGTATATCATTTTCAAA
GTTACCATGAATCTGCCTGAAGTAGATTTCAGAGTTAGAAAAACAAGCCT
TGAGCTCCAGCAAAAGATAGATGGCATGAAAGCTCGTGCTCCAGCCGAAG
CCGCATCTACCCACTTCATTGCATGTTTTCACTGCCCACATCCCATGCCC
GTTCTTCCCCAATGGTGTCTCTCCTCAGGAGCTTCGCACCCTCTTGGAGG
GCTACGGCCCCCTGGATGACAGCGAAGGGCTGGGTGTAGAGGCCCCGGCC
ACAAAAGGATTCGTGCGTGTGCGTTTCATCCACGTGGAGAGCGCGcagag
ggcgaaggaggctttgataggggcggagggggaagggagggaggaggcgg
gaggggaagggagggaaggaggggttaCCGTGGGCGGGCGGCGGGTCAAT
CGGGTCCAGTATTCAGTGATGTGgtcggaagaagaggaggtaagggggga
ggaaggagggaatgcaGGTCACGGGGCCGCAGTTTTATCGGGGGGCTGGC
GAGTACCTtaa
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Coding sequence (CDS) from alignment at CM002467.1:137613..138373+

>rna5934 ID=rna5934|Name=rna5934|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002467.1:137613..138373+ (Nannochloropsis gaditana)
ATGcccgctccacctccgcaggtcctcccgcccctccagcccccccgacC
GCCGCAGCCGTTGCAAACGGGGCTACACCCAGCACCTTACGGTCAAGAAA
ATGTTCCCACACGCTTCCTTTACATATCTGGCATCGGAGATGCGTTAAAG
ACGGACTTGAAGGAGCTTCGCACCCTCTTGGAGGGCTACGGCCCCCTGGA
TGACAGCGAAGGGCTGGGTGTAGAGGCCCCGGCCACAAAAGGATTCGTGC
GTGTGCGTTTCATCCACGTGGAGAGCGCGcagagggcgaaggaggctttg
ataggggcggagggggaagggagggaggaggcgggaggggaagggaggga
aggaggggttaCCGTGGGCGGGCGGCGGGTCAATCGGGTCCAGTATTCAG
TGATGTGgtcggaagaagaggaggtaaggggggaggaaggagggaatgca
GGTCACGGGGCCGCAGTTTTATCGGGGGGCTGGCGAGTACCTtaaATGcc
cgctccacctccgcaggtcctcccgcccctccagcccccccgacCGCCGC
AGCCGTTGCAAACGGGGCTACACCCAGCACCTTACGGTCAAGAAAATGTT
CCCACACGCTTCCTTTACATATCTGGCATCGGAGATGCGTTAAAGACGGA
CTTGAAGGAGCTTCGCACCCTCTTGGAGGGCTACGGCCCCCTGGATGACA
GCGAAGGGCTGGGTGTAGAGGCCCCGGCCACAAAAGGATTCGTGCGTGTG
CGTTTCATCCACGTGGAGAGCGCGcagagggcgaaggaggctttgatagg
ggcggagggggaagggagggaggaggcgggaggggaagggagggaaggag
gggttaCCGTGGGCGGGCGGCGGGTCAATCGGGTCCAGTATTCAGTGATG
TGgtcggaagaagaggaggtaaggggggaggaaggagggaatgcaGGTCA
CGGGGCCGCAGTTTTATCGGGGGGCTGGCGAGTACCTtaa
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Synonyms
Publications