EWM24755.1, cds5919 (CDS) Nannochloropsis gaditana

Overview
NameEWM24755.1
Unique Namecds5919
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:137656..137817 +
Alignment locationCM002467.1:138041..138373 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24755.1
ProductRNA recognition motif domain protein
Orig transcript idgnl|cribi|Naga_100922g3.7983.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:137656..137817 +
CM002467.1supercontigCM002467.1:138041..138373 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait
Homology
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BLAST of EWM24755.1 vs. NCBI_GenBank
Match: gi|585106312|gb|EWM24755.1| (RNA recognition motif domain protein [Nannochloropsis gaditana])

HSP 1 Score: 321.627 bits (823), Expect = 3.973e-111
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MPAPPPQVLPPLQPPRPPQPLQTGLHPAPYGQENVPTRFLYISGIGDALKTDLKELRTLLEGYGPLDDSEGLGVEAPATKGFVRVRFIHVESAQRAKEALIGAEGEGREEAGGEGREGGVTVGGRRVNRVQYSVMWSEEEEVRGEEGGNAGHGAAVLSGGWRVP 164
            MPAPPPQVLPPLQPPRPPQPLQTGLHPAPYGQENVPTRFLYISGIGDALKTDLKELRTLLEGYGPLDDSEGLGVEAPATKGFVRVRFIHVESAQRAKEALIGAEGEGREEAGGEGREGGVTVGGRRVNRVQYSVMWSEEEEVRGEEGGNAGHGAAVLSGGWRVP
Sbjct:    1 MPAPPPQVLPPLQPPRPPQPLQTGLHPAPYGQENVPTRFLYISGIGDALKTDLKELRTLLEGYGPLDDSEGLGVEAPATKGFVRVRFIHVESAQRAKEALIGAEGEGREEAGGEGREGGVTVGGRRVNRVQYSVMWSEEEEVRGEEGGNAGHGAAVLSGGWRVP 164
The following BLAST results are available for this feature:
BLAST of EWM24755.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106312|gb|EWM24755.1|3.973e-111100.00RNA recognition motif domain protein [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5934rna5934Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications