rna5933, rna5933 (mRNA) Nannochloropsis gaditana

Overview
Namerna5933
Unique Namerna5933
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1343
Alignment locationCM002467.1:136073..137275 -

Link to JBrowse

Properties
Property NameValue
Product5-formyltetrahydrofolate cycloligase
Orig transcript idgnl|cribi|Naga_100922g2.7982.mrna
Orig protein idgnl|cribi|Naga_100922g2.7982
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:136073..137275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100922g2gene5730Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24754.1cds5918Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5933rna5933-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5933 ID=rna5933|Name=rna5933|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp
CCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCTGTCCCTTCCCCCCTCACCGTCCCTTTCCAGCCACCCCCAAGC
AACCCCAGCCCACGTGCACTACTGTTTCGAAGTGCTGCTGCACCATTTCA
ACGGCAAAGGCGGGGCCCCACCCGTCCCTGTTTTCGACACGACGGTCAGT
TGCCCTTTGTTCGTGACCTGGGAGAAGGACGGTAAAGGAGTGCGTCACGG
AGGCAAAACAGGCCGTCAATTACGCGGGTGCATCGGCACTTTGAGCCCCA
AGACCCTGGGGGACCTTCGCGAGTACGTCTTTAGCAGTGCTTTCCACGAC
CGACGTTTTTCCCCCATTGCTCACCACGAACTCCCTTCGTTGGCCTGCTC
CGTCTCCCTCTTGGTGGCCTACGAAGACGTCGGGCGCGGGAACGTGTGGG
ATTGGGAAGTGGGCGTGCATGGCATCGTCATCTCCTTCCAAGACGGCGTG
GGTCGTGGGGCCCGCAGGTACTCCGCCACCTACTTGCCGGAAGTGGCCGC
CGAGCAAGCCTGGACCCGGCAGGAGGCTTTGGAGAGTCTGGTCCGAAAGT
CGGGCTACACGGGCACGATCGACGCGGGGGGGAAATTCTGGGAGAAAGTG
GCATTGACCCGGTATCGGAGCAGCAAATTTTCCATGACTTACCGGGAGTT
TGTGGACGGGCGGGGGGAGGGCGGGGGGGAGGGCGGGCGGAAAAAGAGGG
TGGTAGTGTCGTAAATGTTGAGCAGTCGGCAGGAGGAGGGCGGAGGGGCT
CGAGAGGAGAGGGTCCCAGGGGGGGCAACGGAAGGGAAGGAGGGTGCGCA
GAGACGACCAGGCATGTGCTTTGTGCCCGATCTAGGGGTATTGTATCTCT
CTTGACACTGCCGCAGAGAGTTCAAATTATGTGTATATATACACGCGAAT
ATACATAGGTGATGTATCAGTAGGTAGGGTAGGCGCGACGTTCCAGAAAC
TCGCGAGAGGGAGATGAAAGTGTCCGGAGAAACGTGTTTTCCAAGCGGTC
TCAGGGGGCGTATCGCGGTGCTATATATTGGTGAAATAAATAGAAAAATT
GGGAATGGATGTCCGTTTTGCCATGCTTGTGCATGGGCTCAAGGTCAAGG
AGACCTTGAGCTGAAAAGAAAATGAGAGGGGAAAGGGGATCTAGGGAGGG
AGCGAGGACGGGGAGGAGGTCCGGGGGGGAGGGTAGGGCTTAGAGTAGAG
GAGAGCGACCGATAGAAGGGAAGTGATATCCTGAATGAATGGAAATTTGG
GCCAGAAAGAAAAAAGAACACACCAATTTCTGGATGATACTGC
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protein sequence of rna5933

>rna5933-protein ID=rna5933-protein|Name=rna5933|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTP
VVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYW
ELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPG
RSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH
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mRNA from alignment at CM002467.1:136073..137275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5933 ID=rna5933|Name=rna5933|organism=Nannochloropsis gaditana|type=mRNA|length=1203bp|location=Sequence derived from alignment at CM002467.1:136073..137275- (Nannochloropsis gaditana)
AGAGAATTCCGAGGGTCAGTCTGTGGATCGCTCCTTTTGAAAATGGGCAG
TTCGATAACAGATGTGGGAAATGGTGGAATCTTGAGACATCGCAGGACCT
CCCCGGCCCGTGCACCATCGATCCCTCAACTTTGAGGGAGCCCAGGAAGC
GGCGAATAGACTGGTCGCACTGTCTGAGTTTGTGAGCACCGCCTGCATAA
AATGCAATCCTGACACGCCTCCAAAAACAAATCCGAGTCTTGAGTGTTCA
AGCAGGGAAGCTTATTCTTCTGCCTCAGCCCCGGCTACGCACAGGGTTCT
TTTCCTCGCTGGATTCCAGGCAGGTCCGAACTCAGGACACAAAAATCGAA
GCCCCCACCTCCACGGACGTGAAGGAACGGGGAAAGCCATGGCCCCTGAT
GTCACCCTTGCCACGTGTTGACCTGATAGTGGTTGGCTCGGTGGCCGTGG
ATCCGGTCAGTGGGGCTCGGATCGGGAAAGGGGAGGGGTTTGCGGCCTTG
GAGCACGCCATGCTCCGGGCGCTGGATGTGACCGACGCCACCACGCCTGT
GGTGACAACAGCGGGACGAGCAGGTGGTGCCCGGAACGATACCCGGATTT
TGCGCCACGACGTGCCCGTGGACGTGATCATGACCTCTACGCAGACAATG
CGGACCCAGGCGGGGCGGCATTTGCCGGAAGCCTCGGGGATTTATTGGGA
GCTGCTTTCCCCGGAAAAATTGGGCTCGATTCGGGTTAAGCAGATTGGTG
TAAGGGGGCCAGAATGGGGGAAAAGGAAGGAAGAAAGGGCCGGATGCAAG
GAGGGAGAGAGGTCATGCCCCCAATCTGTGCTCTTGCGCCTCCCGGGCCG
GTCTTGCTTAGCGATTGCATGTATTCAAAGCCCCGCTTTTCTCTCCCTTG
GCGTCAATACTCTCAATCACCCGACCAGGGGCATTCGCCCACACGACTCG
CCCGCCCCCGCCGGCTTAGGAGCTGAAATCGCGCATTGAGAAGGAGGAAT
GTGAGCTAACCGACCGGGCCCTCCGAGATCCTCCCTCCTCTAGCTTCGAG
GGGAGGGAAGGGGCGAGGGCGGGAAGCAGGGGGGGGGGAGGAGATCTGGG
ACTTGTTCCTCCGGAGTCTGCTTTTTGTCGTATGCTAGGTAATGATGAGA
AAGAGTGGCCAGGGGCAGGAGGAGATGGGGGACTGGGACCGGCAGTGGAG
CGG
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Coding sequence (CDS) from alignment at CM002467.1:136073..137275-

>rna5933 ID=rna5933|Name=rna5933|organism=Nannochloropsis gaditana|type=CDS|length=591bp|location=Sequence derived from alignment at CM002467.1:136073..137275- (Nannochloropsis gaditana)
ATGTCACCCTTGCCACGTGTTGACCTGATAGTGGTTGGCTCGGTGGCCGT
GGATCCGGTCAGTGGGGCTCGGATCGGGAAAGGGGAGGGGTTTGCGGCCT
TGGAGCACGCCATGCTCCGGGCGCTGGATGTGACCGACGCCACCACGCCT
GTGGTGACAACAGCGGGACGAGCAGGTGGTGCCCGGAACGATACCCGGAT
TTTGCGCCACGACGTGCCCGTGGACGTGATCATGACCTCTACGCAGACAA
TGCGGACCCAGGCGGGGCGGCATTTGCCGGAAGCCTCGGGGATTTATTGG
GAGCTGCTTTCCCCGGAAAAATTGGGCTCGATTCGGGTTAAGCAGATTGG
TGTAAGGGGGCCAGAATGGGGGAAAAGGAAGGAAGAAAGGGCCGGATGCA
AGGAGGGAGAGAGGTCATGCCCCCAATCTGTGCTCTTGCGCCTCCCGGGC
CGGTCTTGCTTAGCGATTGCATGTATTCAAAGCCCCGCTTTTCTCTCCCT
TGGCGTCAATACTCTCAATCACCCGACCAGGGGCATTCGCCCACACGACT
CGCCCGCCCCCGCCGGCTTAGGAGCTGAAATCGCGCATTGA
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Synonyms
Publications