EWM24754.1, cds5918 (CDS) Nannochloropsis gaditana

Overview
NameEWM24754.1
Unique Namecds5918
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:136287..136877 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24754.1
Product5-formyltetrahydrofolate cycloligase
Orig transcript idgnl|cribi|Naga_100922g2.7982.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:136287..136877 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR002698FTHF_cligase
IPR024185FTHF_cligase-like
Homology
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|585106311|gb|EWM24754.1| (5-formyltetrahydrofolate cycloligase [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 4.871e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH 196
            MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH
Sbjct:    1 MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH 196          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|870868776|gb|KMT19579.1| (hypothetical protein BVRB_1g011960 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 117.857 bits (294), Expect = 6.008e-29
Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVTT        +    ++L HDVPVD+I T TQ + T     +P+  GIYWE LSPEKLG +R+ +      E  KR E   G K
Sbjct:  143 KVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTTVHDQQLVDDIPSEKLLIHDVPVDIICTPTQVIYTNTT--IPKPQGIYWEKLSPEKLGQVRILR------ELKKRIERETGQK 265          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|731313614|ref|XP_010681110.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 118.627 bits (296), Expect = 1.220e-28
Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVTT        +    ++L HDVPVD+I T TQ + T     +P+  GIYWE LSPEKLG +R+ +      E  KR E   G K
Sbjct:  218 KVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTTVHDQQLVDDIPSEKLLIHDVPVDIICTPTQVIYTNTT--IPKPQGIYWEKLSPEKLGQVRILR------ELKKRIERETGQK 340          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|950931198|ref|XP_014506378.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Vigna radiata var. radiata])

HSP 1 Score: 117.472 bits (293), Expect = 3.465e-28
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVT+        +    ++L HDVPVD+I T TQ + T     +P+  GIYWE LSPEKLG IR+ +      E  KR E+  G K
Sbjct:  201 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTHTT--IPKPQGIYWEKLSPEKLGQIRILR------ELKKRIEQETGKK 323          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1162574610|ref|XP_007200686.2| (5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus persica] >gi|1139754686|gb|ONH90143.1| hypothetical protein PRUPE_8G036900 [Prunus persica])

HSP 1 Score: 117.857 bits (294), Expect = 3.692e-28
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVTT   +    +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+ +      E  +R E+ AG K
Sbjct:  227 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRFMGAIDDSTPVVTTVHDSQLVDDIPIEKLLVHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKRRIEKEAGQK 349          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1201297245|gb|OVA00239.1| (5-formyltetrahydrofolate cyclo-ligase [Macleaya cordata])

HSP 1 Score: 114.775 bits (286), Expect = 4.667e-28
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRV 113
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D TTPVVT+        +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+
Sbjct:  111 KVDLIVIGSVAVDPTTGARLGKGEGFAELEYGMLRYMGAIDDTTPVVTSVHDRQLVDDIPVEKLLIHDVPVDIICTPTQVIFTN--NSIPKPQGIYWDKLSPEKLGQIRI 218          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1044545256|ref|XP_017438736.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Vigna angularis] >gi|920715421|gb|KOM55509.1| hypothetical protein LR48_Vigan10g140100 [Vigna angularis] >gi|965616844|dbj|BAU01994.1| hypothetical protein VIGAN_11139200 [Vigna angularis var. angularis])

HSP 1 Score: 115.931 bits (289), Expect = 1.132e-27
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVT+        +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+ +      E  KR E+  G K
Sbjct:  201 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTHTT--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGKK 323          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1150100628|ref|XP_020236300.1| (5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Cajanus cajan])

HSP 1 Score: 115.931 bits (289), Expect = 1.138e-27
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVT+        +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+ +      E  KR E+  G K
Sbjct:  205 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPIEKLLIHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGQK 327          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|645264041|ref|XP_008237507.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus mume])

HSP 1 Score: 116.316 bits (290), Expect = 1.250e-27
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVTT   +    +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+ +      E  +R E+  G K
Sbjct:  227 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRFMGAIDDSTPVVTTVHDSQLVDDIPIEKLLVHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKRRIEKETGQK 349          
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1012334618|gb|KYP45973.1| (Methenyltetrahydrofolate synthetase domain-containing protein [Cajanus cajan])

HSP 1 Score: 115.546 bits (288), Expect = 1.263e-27
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
            +VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR +   D +TPVVT+        +    ++L HDVPVD+I T TQ + T     +P+  GIYW+ LSPEKLG IR+ +      E  KR E+  G K
Sbjct:  191 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPIEKLLIHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGQK 313          
The following BLAST results are available for this feature:
BLAST of EWM24754.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106311|gb|EWM24754.1|4.871e-139100.005-formyltetrahydrofolate cycloligase [Nannochlorop... [more]
gi|870868776|gb|KMT19579.1|6.008e-2950.38hypothetical protein BVRB_1g011960 [Beta vulgaris ... [more]
gi|731313614|ref|XP_010681110.1|1.220e-2850.38PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-l... [more]
gi|950931198|ref|XP_014506378.1|3.465e-2850.38PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-l... [more]
gi|1162574610|ref|XP_007200686.2|3.692e-2850.385-formyltetrahydrofolate cyclo-ligase-like protein... [more]
gi|1201297245|gb|OVA00239.1|4.667e-2854.555-formyltetrahydrofolate cyclo-ligase [Macleaya co... [more]
gi|1044545256|ref|XP_017438736.1|1.132e-2749.62PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-l... [more]
gi|1150100628|ref|XP_020236300.1|1.138e-2749.625-formyltetrahydrofolate cyclo-ligase-like protein... [more]
gi|645264041|ref|XP_008237507.1|1.250e-2749.62PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-l... [more]
gi|1012334618|gb|KYP45973.1|1.263e-2749.62Methenyltetrahydrofolate synthetase domain-contain... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5933rna5933Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications