EWM24754.1, cds5918 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|585106311|gb|EWM24754.1| (5-formyltetrahydrofolate cycloligase [Nannochloropsis gaditana]) HSP 1 Score: 394.815 bits (1013), Expect = 4.871e-139 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH 196
MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH
Sbjct: 1 MSPLPRVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARNDTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCKEGERSCPQSVLLRLPGRSCLAIACIQSPAFLSLGVNTLNHPTRGIRPHDSPAPAGLGAEIAH 196
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|870868776|gb|KMT19579.1| (hypothetical protein BVRB_1g011960 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 117.857 bits (294), Expect = 6.008e-29 Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVTT + ++L HDVPVD+I T TQ + T +P+ GIYWE LSPEKLG +R+ + E KR E G K
Sbjct: 143 KVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTTVHDQQLVDDIPSEKLLIHDVPVDIICTPTQVIYTNTT--IPKPQGIYWEKLSPEKLGQVRILR------ELKKRIERETGQK 265
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|731313614|ref|XP_010681110.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 118.627 bits (296), Expect = 1.220e-28 Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVTT + ++L HDVPVD+I T TQ + T +P+ GIYWE LSPEKLG +R+ + E KR E G K
Sbjct: 218 KVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTTVHDQQLVDDIPSEKLLIHDVPVDIICTPTQVIYTNTT--IPKPQGIYWEKLSPEKLGQVRILR------ELKKRIERETGQK 340
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|950931198|ref|XP_014506378.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Vigna radiata var. radiata]) HSP 1 Score: 117.472 bits (293), Expect = 3.465e-28 Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVT+ + ++L HDVPVD+I T TQ + T +P+ GIYWE LSPEKLG IR+ + E KR E+ G K
Sbjct: 201 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTHTT--IPKPQGIYWEKLSPEKLGQIRILR------ELKKRIEQETGKK 323
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1162574610|ref|XP_007200686.2| (5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus persica] >gi|1139754686|gb|ONH90143.1| hypothetical protein PRUPE_8G036900 [Prunus persica]) HSP 1 Score: 117.857 bits (294), Expect = 3.692e-28 Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVTT + + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+ + E +R E+ AG K
Sbjct: 227 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRFMGAIDDSTPVVTTVHDSQLVDDIPIEKLLVHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKRRIEKEAGQK 349
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1201297245|gb|OVA00239.1| (5-formyltetrahydrofolate cyclo-ligase [Macleaya cordata]) HSP 1 Score: 114.775 bits (286), Expect = 4.667e-28 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRV 113
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D TTPVVT+ + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+
Sbjct: 111 KVDLIVIGSVAVDPTTGARLGKGEGFAELEYGMLRYMGAIDDTTPVVTSVHDRQLVDDIPVEKLLIHDVPVDIICTPTQVIFTN--NSIPKPQGIYWDKLSPEKLGQIRI 218
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1044545256|ref|XP_017438736.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Vigna angularis] >gi|920715421|gb|KOM55509.1| hypothetical protein LR48_Vigan10g140100 [Vigna angularis] >gi|965616844|dbj|BAU01994.1| hypothetical protein VIGAN_11139200 [Vigna angularis var. angularis]) HSP 1 Score: 115.931 bits (289), Expect = 1.132e-27 Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARND--TRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVT+ + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+ + E KR E+ G K
Sbjct: 201 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTHTT--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGKK 323
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1150100628|ref|XP_020236300.1| (5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Cajanus cajan]) HSP 1 Score: 115.931 bits (289), Expect = 1.138e-27 Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVT+ + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+ + E KR E+ G K
Sbjct: 205 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPIEKLLIHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGQK 327
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|645264041|ref|XP_008237507.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus mume]) HSP 1 Score: 116.316 bits (290), Expect = 1.250e-27 Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVTT + + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+ + E +R E+ G K
Sbjct: 227 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRFMGAIDDSTPVVTTVHDSQLVDDIPIEKLLVHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKRRIEKETGQK 349
BLAST of EWM24754.1 vs. NCBI_GenBank
Match: gi|1012334618|gb|KYP45973.1| (Methenyltetrahydrofolate synthetase domain-containing protein [Cajanus cajan]) HSP 1 Score: 115.546 bits (288), Expect = 1.263e-27 Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 6 RVDLIVVGSVAVDPVSGARIGKGEGFAALEHAMLRALDVTDATTPVVTTAGRAGGARN--DTRILRHDVPVDVIMTSTQTMRTQAGRHLPEASGIYWELLSPEKLGSIRVKQIGVRGPEWGKRKEERAGCK 134
+VDLIV+GSVAVDP +GAR+GKGEGFA LE+ MLR + D +TPVVT+ + ++L HDVPVD+I T TQ + T +P+ GIYW+ LSPEKLG IR+ + E KR E+ G K
Sbjct: 191 KVDLIVIGSVAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVDDIPIEKLLIHDVPVDIICTPTQVIFTNTS--IPKPQGIYWDKLSPEKLGQIRILR------ELKKRIEQETGQK 313 The following BLAST results are available for this feature:
BLAST of EWM24754.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|