rna5926, rna5926 (mRNA) Nannochloropsis gaditana

Overview
Namerna5926
Unique Namerna5926
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length579
Alignment locationCM002467.1:110772..111300 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100612g3.7317.mrna
Orig protein idgnl|cribi|Naga_100612g3.7317
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:110772..111300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100612g3gene5723Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5926rna5926-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24763.1cds5911Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5926 ID=rna5926|Name=rna5926|organism=Nannochloropsis gaditana|type=mRNA|length=579bp
ATGGGAAAGAGGAAGAAAGAAAAGGGAGGGTGCAAGAAACGAGTTGACAT
GCCGCAGTCGTCGTCGGAGGGACTTAAGGAAGCCGCGGCGAGAGAGCGCA
GGGCTTCAGAAGGAAAGTCTGTCTATCCCAGCATGGGTGGACAGACGACC
CCTGTCGCCTCCCAAAGCGACCCGGATGTGTTGGCGATAGGACTGTCGTC
GAGAGGAGGTTGGGGTGGAAGAAAGGCAGTGCCAGCGGAAAATGAAAGTC
CCGAACCGGGCCGCGTCAAATCAGGCGCAGGAGGTGGTAACAAGGAACAG
AGTGAGAGTGGAGCACTGTCGGAGGGAAAGGCTCGAGGCGCCATTCGTTT
CCCATGGGAGTGTATTCGTCTGACCGGGGTGGGCAGGACGGGCAAAGAGG
TTATGTTCTCCTATATTCTGCGTACAGCGCCGAAACGGGTACAGTATCTG
AGGATGGAGAAAGGAATCGGACGGGCGAAAAATGATGGATCGTGGACGAC
TCTTGGTTTCTACTGGTACGAAGAGAAGGTCATTAAGTGGAGTAAAAGGA
ATATAGAGGAGGGAACCGGTGAATTCTAA
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protein sequence of rna5926

>rna5926-protein ID=rna5926-protein|Name=rna5926|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MESSWVLYLPPRAFGLWCCSYFARLHATYSLEQALSWCLILKLVREVVNR
RDFLPFHLGQPPSSQTSRHDFEKRPGHDNLQDNVPMTLLDVRKRGDKSIT
MELQRARFFDLKMTANFRRCCLEYPYPIMPLN
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mRNA from alignment at CM002467.1:110772..111300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5926 ID=rna5926|Name=rna5926|organism=Nannochloropsis gaditana|type=mRNA|length=529bp|location=Sequence derived from alignment at CM002467.1:110772..111300- (Nannochloropsis gaditana)
ATGGAATCCTCGTGGGTTTTGTACCTGCCGCCTCGGGCGTTTGGGCTGTG
GTGCTGTTCTTATTTCGCCCGTCTGCATGCCACTTATGTCCCACGAGCCT
TCATTTCAGTTTCCCTCACATCTTTTTCGATAATGCGCGGCAAAGTCTTT
GGAACAGGCATTGTCATGGTGCCTTATTTTAAAACTAGTCCGAGAGGTGG
TCAATCGTCGTGATTTCCTCCCTTTCCATCTCGGTCAACCTCCTTCCAGC
CAGACGTCACGTCACGATTTTGAAAAAAGGCCCGGGCACGACAACCTACA
GGACAACGTGCCAATGACTCTTCTAGATGTAGTGTTCAAAGATTGAATAT
CGACGACTATCGAGCGTTTGAAATTACATTTTTCTTAAAATGGTGAGGAG
GAGCGGAAGCGAGGAGACAAGTCAATCACGATGGAGTTGCAACGAGCGAG
ATTCTTTGATTTAAAGATGACCGCAAATTTTCGTAGGTGCTGCTTGGAGT
ACCCGTATCCCATAATGCCATTAAATTGA
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Coding sequence (CDS) from alignment at CM002467.1:110772..111300-

>rna5926 ID=rna5926|Name=rna5926|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002467.1:110772..111300- (Nannochloropsis gaditana)
CGGAAGCGAGGAGACAAGTCAATCACGATGGAGTTGCAACGAGCGAGATT
CTTTGATTTAAAGATGACCGCAAATTTTCGTAGGTGCTGCTTGGAGTACC
CGTATCCCATAATGCCATTAAATTGATCTTTGGAACAGGCATTGTCATGG
TGCCTTATTTTAAAACTAGTCCGAGAGGTGGTCAATCGTCGTGATTTCCT
CCCTTTCCATCTCGGTCAACCTCCTTCCAGCCAGACGTCACGTCACGATT
TTGAAAAAAGGCCCGGGCACGACAACCTACAGGACAACGTGCCAATGACT
CTTCTAGATGTAATGGAATCCTCGTGGGTTTTGTACCTGCCGCCTCGGGC
GTTTGGGCTGTGGTGCTGTTCTTATTTCGCCCGTCTGCATGCCACTTATC
GGAAGCGAGGAGACAAGTCAATCACGATGGAGTTGCAACGAGCGAGATTC
TTTGATTTAAAGATGACCGCAAATTTTCGTAGGTGCTGCTTGGAGTACCC
GTATCCCATAATGCCATTAAATTGATCTTTGGAACAGGCATTGTCATGGT
GCCTTATTTTAAAACTAGTCCGAGAGGTGGTCAATCGTCGTGATTTCCTC
CCTTTCCATCTCGGTCAACCTCCTTCCAGCCAGACGTCACGTCACGATTT
TGAAAAAAGGCCCGGGCACGACAACCTACAGGACAACGTGCCAATGACTC
TTCTAGATGTAATGGAATCCTCGTGGGTTTTGTACCTGCCGCCTCGGGCG
TTTGGGCTGTGGTGCTGTTCTTATTTCGCCCGTCTGCATGCCACTTATCG
GAAGCGAGGAGACAAGTCAATCACGATGGAGTTGCAACGAGCGAGATTCT
TTGATTTAAAGATGACCGCAAATTTTCGTAGGTGCTGCTTGGAGTACCCG
TATCCCATAATGCCATTAAATTGATCTTTGGAACAGGCATTGTCATGGTG
CCTTATTTTAAAACTAGTCCGAGAGGTGGTCAATCGTCGTGATTTCCTCC
CTTTCCATCTCGGTCAACCTCCTTCCAGCCAGACGTCACGTCACGATTTT
GAAAAAAGGCCCGGGCACGACAACCTACAGGACAACGTGCCAATGACTCT
TCTAGATGTAATGGAATCCTCGTGGGTTTTGTACCTGCCGCCTCGGGCGT
TTGGGCTGTGGTGCTGTTCTTATTTCGCCCGTCTGCATGCCACTTAT
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Synonyms
Publications