rna5923, rna5923 (mRNA) Nannochloropsis gaditana

Overview
Namerna5923
Unique Namerna5923
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length306
Alignment locationCM002467.1:106512..107625 +

Link to JBrowse

Properties
Property NameValue
Producthoming endonuclease rb16 2
Orig transcript idgnl|cribi|Naga_101200g1.102.mrna
Orig protein idgnl|cribi|Naga_101200g1.102
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:106512..107625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101200g1gene5720Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5923rna5923-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24765.1cds5908Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5923 ID=rna5923|Name=rna5923|organism=Nannochloropsis gaditana|type=mRNA|length=306bp
ATGTACACCGCGCATGACACCGCCTACGGAGCCATTGGCGGCTCTCTCCT
GCATTTTGAATCCAGAAATGAAAAAGAACCTCCCGGAAACAAAAGCGGGG
AAGGCTCTAATACGATAGCAGAAAGCTTTATATTTGGAAGATTCGCGGTT
GTAAAGCGATGCATTCGTACTTTTGACAGCAAAGAAAATTCGATAGTTGA
GGCCCAAAGTCCGCTGTGGACGCATTTGCGAAGCCTTAAAATCCATAAAT
CAAAGAACCACAGCCTAATTGCTATGAGAATACATCCACGCATTCCTGTC
TTTTAA
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protein sequence of rna5923

>rna5923-protein ID=rna5923-protein|Name=rna5923|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQC
YDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFV
PLPPESADSEAPRLRVLIPREGGRGGAGGGRGAGRGRKRRSPSPSPSRYP
EKFYSDEEEGGEEEVILSD
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mRNA from alignment at CM002467.1:106512..107625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5923 ID=rna5923|Name=rna5923|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp|location=Sequence derived from alignment at CM002467.1:106512..107625+ (Nannochloropsis gaditana)
TCCAGATTGAGACCAAGGCCGCGTGTGCGCATTTTTGCTGCCAATTTACC
ACGGTGGCATCTGGCTTGAAAGGCggtttctcttcctttctcccgcctgc
ctcctcacccttGTGACGGCCAGGCTATTTTTTGCACATCACTGCGTCCT
TTGAACAATGGATCATCTCCATCAGGGCAAAGTCACATCCGACTATCGCG
GTGAGTATCTGCAAGGGTGTAtcttttcctctcgccttccatacttttct
ccttccttcctttcccttttttcaaaTTTGTTTTGGGGGGTGCCGAGTCC
ATTGTTTGTTGCCCTTATCCGCGTCCGCTGATCAGGCCGACGCCACCACT
CTTTGTACACTTCATGACACTTGTATCTACCTGATTTTGTGACTCGGTGG
ATTATCCGACGTGGATCATGTTCCTGTCGTCTATCGCTGCGCCCATATTC
GTGCATGGAGGCTGTGGAACGTCCACCAACGTTGTTTCACCCCGCTTTTC
CTTCGCACCCGTATACCTTTAGGCATTCGTTGGCATAAGTGCAACCGGAA
ATGGGAAGTGCAAATTAAATACCGGGGAAAGAAACTCTCCTTGGGGTATT
TCGACGACGAGTTGGTCGCCGCGCAATGCTACGACCGCCGCGCCAAGGAG
CTTTACGAAACGCCCCTTTTAAATTTCCTGCCAGGAGGAAAACTCAATCC
CGAGAGGAAACGACGCGTGGATCCTCGAAGCTTGAGGTAGGGaaagagtg
agggagggagggagggagggagggtttgaTTGCAGATCCTTCCGCACGAG
GGCGCTCGGCTTTTTCTCTTTAACCTCATCTTGCTcgcccgacctccctc
ctttcctcccccaggccacggcgcatccctcctccttggtgcGCCGATAA
GTTTgtcccccttccgcccgagTCTGCGGACAGCGAGGCTCCCCGCCTGC
GTGTGCTGATCccgcgcgagggagggcgggggggggcggggggagggcgg
ggggcagggcgaggcCGGAAGCGTCGAAGTCCCAGTCCAAGCCCCAGCCG
GTACCCTGAAAAATTCTacagcgacgaagaggaaggcggggaggaggagg
taattTTGTCGGAC
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Coding sequence (CDS) from alignment at CM002467.1:106512..107625+

>rna5923 ID=rna5923|Name=rna5923|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at CM002467.1:106512..107625+ (Nannochloropsis gaditana)
ATGGATCATCTCCATCAGGGCAAAGTCACATCCGACTATCGCGGCATTCG
TTGGCATAAGTGCAACCGGAAATGGGAAGTGCAAATTAAATACCGGGGAA
AGAAACTCTCCTTGGGGTATTTCGACGACGAGTTGGTCGCCGCGCAATGC
TACGACCGCCGCGCCAAGGAGCTTTACGAAACGCCCCTTTTAAATTTCCT
GCCAGGAGGAAAACTCAATCCCGAGAGGAAACGACGCGTGGATCCTCGAA
GCTTGAGgccacggcgcatccctcctccttggtgcGCCGATAAGTTTgtc
ccccttccgcccgagTCTGCGGACAGCGAGGCTCCCCGCCTGCGTGTGCT
GATCccgcgcgagggagggcgggggggggcggggggagggcggggggcag
ggcgaggcCGGAAGCGTCGAAGTCCCAGTCCAAGCCCCAGCCGGTACCCT
GAAAAATTCTacagcgacgaagaggaaggcggggaggaggaggtaattTT
GTCGGACATGGATCATCTCCATCAGGGCAAAGTCACATCCGACTATCGCG
GCATTCGTTGGCATAAGTGCAACCGGAAATGGGAAGTGCAAATTAAATAC
CGGGGAAAGAAACTCTCCTTGGGGTATTTCGACGACGAGTTGGTCGCCGC
GCAATGCTACGACCGCCGCGCCAAGGAGCTTTACGAAACGCCCCTTTTAA
ATTTCCTGCCAGGAGGAAAACTCAATCCCGAGAGGAAACGACGCGTGGAT
CCTCGAAGCTTGAGgccacggcgcatccctcctccttggtgcGCCGATAA
GTTTgtcccccttccgcccgagTCTGCGGACAGCGAGGCTCCCCGCCTGC
GTGTGCTGATCccgcgcgagggagggcgggggggggcggggggagggcgg
ggggcagggcgaggcCGGAAGCGTCGAAGTCCCAGTCCAAGCCCCAGCCG
GTACCCTGAAAAATTCTacagcgacgaagaggaaggcggggaggaggagg
taattTTGTCGGACATGGATCATCTCCATCAGGGCAAAGTCACATCCGAC
TATCGCGGCATTCGTTGGCATAAGTGCAACCGGAAATGGGAAGTGCAAAT
TAAATACCGGGGAAAGAAACTCTCCTTGGGGTATTTCGACGACGAGTTGG
TCGCCGCGCAATGCTACGACCGCCGCGCCAAGGAGCTTTACGAAACGCCC
CTTTTAAATTTCCTGCCAGGAGGAAAACTCAATCCCGAGAGGAAACGACG
CGTGGATCCTCGAAGCTTGAGgccacggcgcatccctcctccttggtgcG
CCGATAAGTTTgtcccccttccgcccgagTCTGCGGACAGCGAGGCTCCC
CGCCTGCGTGTGCTGATCccgcgcgagggagggcgggggggggcgggggg
agggcggggggcagggcgaggcCGGAAGCGTCGAAGTCCCAGTCCAAGCC
CCAGCCGGTACCCTGAAAAATTCTacagcgacgaagaggaaggcggggag
gaggaggtaattTTGTCGGAC
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Synonyms
Publications