EWM24765.1, cds5908 (CDS) Nannochloropsis gaditana

Overview
NameEWM24765.1
Unique Namecds5908
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:106669..106711 +
Alignment locationCM002467.1:107034..107247 +
Alignment locationCM002467.1:107376..107625 +

Link to JBrowse

Properties
Property NameValue
End range.
End range107625
Protein idEWM24765.1
Producthoming endonuclease rb16 2
Partialtrue
Orig transcript idgnl|cribi|Naga_101200g1.102.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:106669..106711 +
CM002467.1supercontigCM002467.1:107034..107247 +
CM002467.1supercontigCM002467.1:107376..107625 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR001471AP2/ERF_dom
Homology
[Close]
BLAST of EWM24765.1 vs. NCBI_GenBank
Match: gi|585106326|gb|EWM24765.1| (homing endonuclease rb16 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 339.347 bits (869), Expect = 5.482e-118
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRGGAGGGRGAGRGRKRRSPSPSPSRYPEKFYSDEEEGGEEEVILSD 169
            MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRGGAGGGRGAGRGRKRRSPSPSPSRYPEKFYSDEEEGGEEEVILSD
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRGGAGGGRGAGRGRKRRSPSPSPSRYPEKFYSDEEEGGEEEVILSD 169
[Close]
BLAST of EWM24765.1 vs. NCBI_GenBank
Match: gi|553181014|ref|XP_005853499.1| (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >gi|422295563|gb|EKU22862.1| homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 257.684 bits (657), Expect = 3.035e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRG 125
            MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRG
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPLPPESADSEAPRLRVLIPREGGRG 125
[Close]
BLAST of EWM24765.1 vs. NCBI_GenBank
Match: gi|553187600|ref|XP_005854643.1| (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >gi|422294419|gb|EKU21719.1| homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.912 bits (520), Expect = 9.754e-66
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCAD 97
            MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCAD
Sbjct:    1 MDHLHQGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCAD 97
[Close]
BLAST of EWM24765.1 vs. NCBI_GenBank
Match: gi|971482802|ref|YP_009194301.1| (homing endonuclease [Klebsiella phage Matisse] >gi|910308672|gb|AKU44361.1| homing endonuclease [Klebsiella phage Matisse])

HSP 1 Score: 56.225 bits (134), Expect = 6.945e-7
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:    6 QGKVTSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKEL 58
            +   +S Y+G+ W K   KW+V I+Y  KK+ LGYFDDE+ AA+ YD +A E+
Sbjct:   98 KSNTSSIYKGVSWDKPTCKWKVGIQYNRKKIHLGYFDDEIEAAKAYDAKAIEI 150
The following BLAST results are available for this feature:
BLAST of EWM24765.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585106326|gb|EWM24765.1|5.482e-118100.00homing endonuclease rb16 2, partial [Nannochlorops... [more]
gi|553181014|ref|XP_005853499.1|3.035e-86100.00homing endonuclease rb16 2, partial [Nannochlorops... [more]
gi|553187600|ref|XP_005854643.1|9.754e-66100.00homing endonuclease rb16 2, partial [Nannochlorops... [more]
gi|971482802|ref|YP_009194301.1|6.945e-747.17homing endonuclease [Klebsiella phage Matisse] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5923rna5923Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications