rna5920, rna5920 (mRNA) Nannochloropsis gaditana

Overview
Namerna5920
Unique Namerna5920
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1292
Alignment locationCM002467.1:96400..98120 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100255g7.4992.mrna
Orig protein idgnl|cribi|Naga_100255g7.4992
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:96400..98120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100255g7gene5715Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5920rna5920-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24773.1cds5905Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5920 ID=rna5920|Name=rna5920|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
CCATGTCTTTCTCAATAAAAATTTGTAAATGTCTGTTAGGCACAAGCGGG
GCGAGTTTTTTCCAGGGCCTATCAATGCGGACGTTGTAATGGCAATGAAT
GCTGGGTGCGGCGATGGAGACGTAAGCCACAAGTAGACCGTTACCGCCTC
TTGATCACTTGCGAGGCGTGCGGAGAGCATTGGGATGAATGAAAGTCCTC
CCTCCCTCTCTCTCCTTTCATTTCTCTCCCGTATGCTTTATCGACCAAAT
TGGGTTCGGATACGCTATCCTCATTGCAAGAATTTCAAAGTGGAGTCACA
AACCGACGCCGTCTTCGCAGCAGAAAGGCAATGACACCCGCCGCCGTCAA
AAAAAGGACAGCCCCTATACCCCCTGCCAATGCGCGGCGTTGACGTTTCT
GAAGTTCCATTTGTTTCAATCTAGCCGCTCTACGGGCTTCTTCCTCGTCC
AATATAGAGATTGGAAGCCCCGGATTTTGCGTAGGGGAACCCGTCAGAAC
CACAGGGGGGATCGGTGCGATCGATGGCGTCTCAGTCTCTCTAGGTCTGA
ATGTGGGTCCAGTAGTCATTCCGCTCATATTCGTCGAAGGGGCCGCCGAA
ACACCTCGGCCCACCGTGCCAACCGATGTCGGAAACACCGTTGATGATAT
TGAAGGAGTACGCGTCGTCGAAAACATATCGGAAGGCAATGCAGTAGGAA
CCTTGGTGGGAGATGGCGTGGGAGCCGGCGTGGGAGCAGGCGTAGGCGAG
GCCGTCGGGGAGACCGTCGGGCTTGCGGTAGGCGCGCGGGTGGGGGAGGC
TGTGGGCGAGGCCGTAGGCGCTTCGGTGGGAGATGGCGTGGGAGCCGGCG
TGGGAGCAGGCGTAGGCGAGGCCGTCGGGGAGACCGTCGGGCTTGCGGTA
GGCGCGCGGGTGGGGGAGGCTGTGGGCGAGGCCGTAGGCGGCAATGTTAC
ACAAACTCCTCCATTGTAGGCATAGGAGTGAGTTCCAGTAGCGGAAGGGT
CTTCGTCCATTGTGACAACCTCGTCGCAGCTGATCCCGCACCAGCAACTG
CTTTTGTAGATAGGTAGTGCAGTCTCTGGATCGTAGAAATCAAAGAATTT
ATTATCGATTTCCAAGTTGTAGCACTCGTCTCTGCAGGCGGTTGCGTTAG
GCTGAAAGGATATGGTGAGGCTTTTTTAAGATACGGCATTTTAACGAAAA
GAAAAGGAATACAAAACTCAGAATAAATTTCCTGTACTACTATTTTGGAA
TTAAAAGTGCGAGATATTGTACTCACCCGCAATCCTGCGTTT
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protein sequence of rna5920

>rna5920-protein ID=rna5920-protein|Name=rna5920|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MSSARRNGKITSVIYHDDATIEGKGSYCLEAALAMALEASSPSGGETEEE
EKTCIETEKAPAADFDPILEASEKSYLAFSSTAEDGDSRSKPSYFEPVPD
DVLCRILTYAGSSRGKCCKRWEKAKTLVLRARHVDALVQKTKLPEPLCRA
LERELFLATQERIASREYQNMLRKLLFHLKDPGDMRAASSNTRLREELLI
G
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mRNA from alignment at CM002467.1:96400..98120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5920 ID=rna5920|Name=rna5920|organism=Nannochloropsis gaditana|type=mRNA|length=1721bp|location=Sequence derived from alignment at CM002467.1:96400..98120- (Nannochloropsis gaditana)
TAATGGTTGTAATCGGGTGACGTTTCCGTCGGTTGAAGTTTTTTGGTCCG
AGTTGCGCTTTTGACTACCTCCTCCTCCTCAGCCCACAACCCTTTCCACG
CTACACCCTATAGAAATGAGTTCAGCCAGAAGAAACGGCAAAATTACCAG
CGTAATATATCATGACGACGCAACAATTGAGGGGAAGGGCTCTTATTGCT
TGGAGGCGGCTTTGGCCATGGCTTTGGAAGCCTCATCCCCGTCAGGGGGA
GAAACAGAGGAGGAGGAGAAGACATGTATTGAAACAGAGAAAGCCCCAGC
AGCTGATTTTGATCCGATTTTAGAGGCATCTGAAAAGAGCTACCTTGCAT
TCAGTTCAACGGCGGAAGATGGAGACTCAAGGTCCAAGCCATCGTACTTC
GAGCCAGTACCCGACGTACGTCTGAAAGTCCGCCCCTTCTATGAAAGATA
TCTTCCCAATTAATCATTAGTCGTATCAAATCATCCGGTCATATCATTTG
TGTGCTCTGTGCTGCCATCTGAGCTTATTTTCTAATGTTGCACTGTCCAC
AGGACGTCCTTTGCCGCATCCTCACCTACGCAGGGTCTTCACGCGGGAAA
TGCTGCAAACGATGGGAAAAAGCGAAAACATTGGGTAAGAAGTGTACTCC
AGGGAGGCGTGCTGGCTGTGTCGAACCCGAAAAGGCCATAAAACGGAGGG
TCAAGGGCGTAACTGTCAAGTGTGAAGGAGGAAATGACAGGAAAAAGGAT
ACCAATTAAAAATAGTGGTGGACGCCTGAGACAGTCGATCACGGTATCAG
GAATAGTAAGACAAGATCTCTACCCCCCCTGTCCCTCGCTCTCCCTTCAC
CCCGCCTTCCCTCGTTCCCTTTGCTCCTTTCCCTCCTGCCCTAGTCCTGC
GGGCACGTCACGTGGATGCCTTGGTACAGAAAACCAAACTGCCTGAGCCC
CTTTGCCGAGCCCTTGAGCGCGAACTATTCTTGGCGACGCAGGAACGGTG
AGTGCGCCAGGGGATGGCGTTCAAAGAGGGAGACGTGGGCGATGGGATGG
TGTGCAAAACGAAAAGCCGCCATGGGGTTTCTGGGGCGTGGTGTCTCGAG
TGGAAAGAGGAGGATGAATCCCTGAGGAAGTTGTGGAGGTGGTGGGGGAA
CGTTTGAAGGGCGGCAACATACCGGGTACCGAATTGGTGAATGTCGTGCC
TGTGGACCGAGAAGGGAGAGGTCGCTTACGGTCGTCAATACCCGCGGTCT
TTTAGCAATGTGACTCACTGACTGGCTTGTACTCATTTCCCTTTCGTGGG
CTGCGACATTGAGCATAGGATTGCCTCCCGAGAGTATCAAAATATGCTCC
GCAAGCTTCTTTTCCATTTGAAAGACCCTGGGGATATGCGTGCGGCGAGT
AGTAACACTCGATTGCGTGAGGAGCTGCTCATTGGGTAGGTGCATTCGTG
ATTCCTGGTCCCTGTTTCCTGTATCTTTTGGCCTTTGTTCTTGTTTCGCT
ATTCCTCTTTATTCTAAGTTGTGCTCCTTCTGCAATTATCTTGACCGTTG
TTGGGGAATATTAATTAAACTTTATGTCAGTTTTGACGGACGATTGAATC
TGAATCTGTTCGGGTACACCTTGATTTGCGGTAAAGCAGACGCAAGACTC
AAAAGCGGCCATGATTCAAACACTAATTTTCTTTTTCTCTCCATGTCTAA
GAATGTGTTACGTTGTATTTA
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Coding sequence (CDS) from alignment at CM002467.1:96400..98120-

>rna5920 ID=rna5920|Name=rna5920|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002467.1:96400..98120- (Nannochloropsis gaditana)
GATTGCCTCCCGAGAGTATCAAAATATGCTCCGCAAGCTTCTTTTCCATT
TGAAAGACCCTGGGGATATGCGTGCGGCGAGTAGTAACACTCGATTGCGT
GAGGAGCTGCTCATTGGGTAGTCCTGCGGGCACGTCACGTGGATGCCTTG
GTACAGAAAACCAAACTGCCTGAGCCCCTTTGCCGAGCCCTTGAGCGCGA
ACTATTCTTGGCGACGCAGGAACGGACGTCCTTTGCCGCATCCTCACCTA
CGCAGGGTCTTCACGCGGGAAATGCTGCAAACGATGGGAAAAAGCGAAAA
CATTGGATGAGTTCAGCCAGAAGAAACGGCAAAATTACCAGCGTAATATA
TCATGACGACGCAACAATTGAGGGGAAGGGCTCTTATTGCTTGGAGGCGG
CTTTGGCCATGGCTTTGGAAGCCTCATCCCCGTCAGGGGGAGAAACAGAG
GAGGAGGAGAAGACATGTATTGAAACAGAGAAAGCCCCAGCAGCTGATTT
TGATCCGATTTTAGAGGCATCTGAAAAGAGCTACCTTGCATTCAGTTCAA
CGGCGGAAGATGGAGACTCAAGGTCCAAGCCATCGTACTTCGAGCCAGTA
CCCGACGATTGCCTCCCGAGAGTATCAAAATATGCTCCGCAAGCTTCTTT
TCCATTTGAAAGACCCTGGGGATATGCGTGCGGCGAGTAGTAACACTCGA
TTGCGTGAGGAGCTGCTCATTGGGTAGTCCTGCGGGCACGTCACGTGGAT
GCCTTGGTACAGAAAACCAAACTGCCTGAGCCCCTTTGCCGAGCCCTTGA
GCGCGAACTATTCTTGGCGACGCAGGAACGGACGTCCTTTGCCGCATCCT
CACCTACGCAGGGTCTTCACGCGGGAAATGCTGCAAACGATGGGAAAAAG
CGAAAACATTGGATGAGTTCAGCCAGAAGAAACGGCAAAATTACCAGCGT
AATATATCATGACGACGCAACAATTGAGGGGAAGGGCTCTTATTGCTTGG
AGGCGGCTTTGGCCATGGCTTTGGAAGCCTCATCCCCGTCAGGGGGAGAA
ACAGAGGAGGAGGAGAAGACATGTATTGAAACAGAGAAAGCCCCAGCAGC
TGATTTTGATCCGATTTTAGAGGCATCTGAAAAGAGCTACCTTGCATTCA
GTTCAACGGCGGAAGATGGAGACTCAAGGTCCAAGCCATCGTACTTCGAG
CCAGTACCCGACGATTGCCTCCCGAGAGTATCAAAATATGCTCCGCAAGC
TTCTTTTCCATTTGAAAGACCCTGGGGATATGCGTGCGGCGAGTAGTAAC
ACTCGATTGCGTGAGGAGCTGCTCATTGGGTAGTCCTGCGGGCACGTCAC
GTGGATGCCTTGGTACAGAAAACCAAACTGCCTGAGCCCCTTTGCCGAGC
CCTTGAGCGCGAACTATTCTTGGCGACGCAGGAACGGACGTCCTTTGCCG
CATCCTCACCTACGCAGGGTCTTCACGCGGGAAATGCTGCAAACGATGGG
AAAAAGCGAAAACATTGGATGAGTTCAGCCAGAAGAAACGGCAAAATTAC
CAGCGTAATATATCATGACGACGCAACAATTGAGGGGAAGGGCTCTTATT
GCTTGGAGGCGGCTTTGGCCATGGCTTTGGAAGCCTCATCCCCGTCAGGG
GGAGAAACAGAGGAGGAGGAGAAGACATGTATTGAAACAGAGAAAGCCCC
AGCAGCTGATTTTGATCCGATTTTAGAGGCATCTGAAAAGAGCTACCTTG
CATTCAGTTCAACGGCGGAAGATGGAGACTCAAGGTCCAAGCCATCGTAC
TTCGAGCCAGTACCCGACGATTGCCTCCCGAGAGTATCAAAATATGCTCC
GCAAGCTTCTTTTCCATTTGAAAGACCCTGGGGATATGCGTGCGGCGAGT
AGTAACACTCGATTGCGTGAGGAGCTGCTCATTGGGTAGTCCTGCGGGCA
CGTCACGTGGATGCCTTGGTACAGAAAACCAAACTGCCTGAGCCCCTTTG
CCGAGCCCTTGAGCGCGAACTATTCTTGGCGACGCAGGAACGGACGTCCT
TTGCCGCATCCTCACCTACGCAGGGTCTTCACGCGGGAAATGCTGCAAAC
GATGGGAAAAAGCGAAAACATTGGATGAGTTCAGCCAGAAGAAACGGCAA
AATTACCAGCGTAATATATCATGACGACGCAACAATTGAGGGGAAGGGCT
CTTATTGCTTGGAGGCGGCTTTGGCCATGGCTTTGGAAGCCTCATCCCCG
TCAGGGGGAGAAACAGAGGAGGAGGAGAAGACATGTATTGAAACAGAGAA
AGCCCCAGCAGCTGATTTTGATCCGATTTTAGAGGCATCTGAAAAGAGCT
ACCTTGCATTCAGTTCAACGGCGGAAGATGGAGACTCAAGGTCCAAGCCA
TCGTACTTCGAGCCAGTACCCGAC
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Synonyms
Publications