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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100255g5.4987.mrna |
Orig protein id | gnl|cribi|Naga_100255g5.4987 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002467.1 | supercontig | CM002467.1:88763..91120 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=mRNA|length=2023bp ATGGACGACAACACGGAGGAAGTCATCAATGACAGCACCGTAGAAATAAA GCTTCCAACGGCGCAGTCAGAGAAAATAGGTGCCAATGAACCGGTGGAGC AGCTGCAGCGACCCACCTGGACGGAAAAGGGAAAAAACGACTTCGTGCAG CGATTGCCTGAGGAGGCACTCAGTTGCAGCACGCATTCAACACCCCTCCA GCAAGGCAATCCGACGAAAATAAACGATGAAATATTATCAGCGGACCCAG GCAACGATCCTAGTTTAAAGAAACGGGAGCGGTGCGAGGAAATGGAGGAC AAGGACGATTTGATTCCCAAAAAGAGGCCCAAAGAGTTCAAGACGTGGTT TCCGTCTTCTGCCCACATTAGCACCGCGGTGCCCGTGGCCGTCATGCCAT CTGCCCTATCCCTGATGGTTGACGAGGGCATCTTGAGGATGGGGGAAGAA GCCCCGCGGGCGGACACGGACTATTTCGACAAGCGGGTCGTGGACGCGGC GGCTGTGCGGGCGATTGAGGAGGAACGGGAGGAGAACAAACGGCGACGCC TGGAGGTCGCCCGGCAACGAGCGGCAGAGGAGCAGCGGGCCCTTGCTGCC GCCATGGGAGCCTCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC CCCCTCGTCCCGAAGATTTACGGGAGAAGCAAGGGGAGGAGAGAGGGAAG CGGGGGGGAAGGGCAATGAAGAAGGTTGTCAGGGTGTGGAAGAAAACGCA GGAGAGGAAGGAGGAGAAAGTGGCGATAGAAGTGATGAAGAAGGAGAGGA AAGAGGAGGAAGGGAAAAAGGAGAAGGCCTGATGGGGAGAAGCGGGGGGG AAAAGGGGCGAGAACAAGGAGAGGGAGCGGCAGAAGAGGAAGGACAAGGA GGAGGGAAGGAAAGTAGCGGGAAAGAGGAGATGGTGGTGGAGGAGGCGAG CACGGCGGCCCCTCCTGCCGTGGAAAATGGAGCCCACGCAGATTTGACAC GTACCCCCCCGGCCTCTTCTTCCCTTCCTCCTTCCCTTCCTCCCTCCTTC CTTTCCGACTCTTCGTCCTCCTCCCACCCCTCCTCCCTCAATGGTCCTGG CACGGCGCGCCTCCCCCCTCCTTCTGCCTTCGCCCATCTCGAACAAGTCG CTTCCCAGCACTTACTCCCACCCCGACCTCTGTCCAACCCTCCCTCCATC CCTCCCTCCCTGCCTTTGGTCCGGGGCCTGGCCGACATGTCCGGGTACCA TTCCCTGGAAGAAAGGATGCTGAGGGCCGTCTATCGCGACCTGTGGGAGA GGGGCTTGACCATCGGAAGCGGAGGGGCCTATGGCGCTGACTTTACTGCC TACGAAGGCGACCCCATGGCCTTCCACTCCTTCGCCGCGATCATCGTCCT CCCTGCCTCCTCCCCTCTCTCGGCCCGGGCCCTCTCTGCCAGTGTCCGGC TGGAACAAAGCGTGGTGAAATTGTTAGTTTACGCCGTCTGCCATCGGAGG GAGGGAGAGGAGGAGCACATGGAAGGTAGAGGGGAGAAACGGACGGGTGA AGGGGGGGAGAACGGGGGCGAAGAGAGGGAGAAAGACGTGAGGATGGAAA CTTCCACTTTTGCCGAGGGAAAAGGTAAAGAGGGAGACGTAGGTACTAGG GCGGCGATTACACGATTTGGGTGGCCGCGGCGGAGTTATGTGGGTGGTTT TATGATCGAATACATGACACTAAGGTTCATTTCCGTCACTAGAAGGATGG AATAAGCCCAGGAAGGGTAGAAGAACAAAGAAATGAACGATCAATTAGCA GTCTTATTTCCACGTGAAGGATAGAGAAGTGGAAAAGCTGTTAAAGTGAT GGGGAGGGCCGACCGGCATGATTGTTTGTGAAGTCTTCGACGTGCAGACC GGGCCTAAAAGGATACGTATTGAGTAGTTTTTTGATAAAGCAGATGACCT AGATTTGTTTGCTATATATCTAAGAAGGGAAAGGTCTTAAGCTCAATATA AAGTATACAGTTCAATCACCTAA back to topprotein sequence of rna5918 >rna5918-protein ID=rna5918-protein|Name=rna5918|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp MDTPGRRIPGQGRKRCSPPVPSAPYFDAAFEPGLTKTTSTPDSSFSCHHS GPRQRKGPLRVESLEMAVARREDDEEGARLRRACEQLERDREEGEREVWN LRSRLRSLEDAHAFREASLRVQQREEMALLKDEGVRREEEWKAAMFKAQQ ETRAARELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAE WRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEM QEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEERE MMMAWSKEGKEVTVEDEAFR back to topmRNA from alignment at CM002467.1:88763..91120+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=mRNA|length=2358bp|location=Sequence derived from alignment at CM002467.1:88763..91120+ (Nannochloropsis gaditana) ATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTC
CCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTC
TTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCA
GGGCCACGACAGAGGAAAGGTCCTCTGCGGGTGCGAAATGGAAGGACGGA
GTGTGGTGTCCCGGGTAAGTGGCATCAAGATGAAGAATTTGGAGGTAGTG
GCTGCATGCTTCATGCGTAGGGTGAGTGACAAAAACGACGTCTGTATCAT
ACCCTTTTATGGCTCACTTACGCATCGGATTCATTGGatcggaagggagg
agcccTGAAAATAatagggagggcgggaaagagagaaggaaagaggaaca
gacagaggatgaaaaggaggccgTTCGAGCGCGTCGACGCGCGTTGCTCC
AGCAAGAAACTATCATCCAGCTCAAGGCCAAGGTAGAGAGAAATTTTTTG
TCTGTAAATGGATTGATAGAAaggtttccccccccccccgagtTGTAGCT
TTGCTCACACTTTGGCCAAGAAAAGATCATCTTGAcgtgtcttccttccc
tccttcccttcctccctccccggtgAAAAGATCATCTTGAcgtgtccttc
cttcctttcttccctacttcccttcctctctccctccctccctggtgctA
ACAGGTAGAAAGCTTGGAGATGGCGGTGGCGCggagagaggatgacgagg
agggcgctCGATTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggag
gagggagagagggaggtgtggAATTTGCGGAGCAGgtggatagggaggga
gggagggagggagggagggagggagagaaggagggatgaaagagGGACTG
GAAGTGGAGCACGGAAATACATAGAGGGTGCATCGTTCACAGCCTAGCTC
ATTCGCTTGGCTGGTGACGTGCAAGCAAGCTCGTTGGTAACTTCGTAATG
Accagtcctccctcccttctccctgcctcccttcctccttccccccctcc
ctccctcctaccctctaGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTC
GGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAA
GACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGC
GCAGCAAGAGACTCGAGCGGCGGTccggggctgggaggaggcgaagaggg
agctGAGAGTCCtgcggagggaagcgagggagggagggagggagggaagg
gcgatgggaaaaggaagggaggaaggaggatatggtgtggaggtggggac
gcaagggaggagtcggggggctgggggaaggaggaaggaggatccCCAAC
GGAGAAGGGTAAGCACGGCCACAGCGAGCACACAAACACGGGGACCGCAA
acaggcgaaggagggagggagggagggagggagggagggagggagggagg
ggggaagactgGAGGCAGCGTGCgacggaggcagaggaagcgcTTGTGAA
GATGGCggcgagggtggaggacaagcaGTGGGCGTATTGGAAACAGCGGG
AGCTGCTGGGACGGGTCTTGGAGGTAGGGGAGAAAGGTTTCGGgggggcg
cagggagggagggacggaggaagggaaggatcaCGACCTTTACCCTCCTT
GTGCGCCCCTCTCCCATTTTCaagtcctccctcacctccgccttgggctc
tcccctcctcttttctctagGATATCGTGAATCTCGCTTATTCAGAGGCC
CAGTACGACGGGGGTATCGGCGCCTgctctcctgcttccccctcgacctc
acCCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGT
CCATCATGCgtctggaaagagaggcgaaggTGAGGGGGTAGGAatagggg
gaggggagggcggataTGCATGTTATCATACCTGAAAAGGTATATATTAA
CTATATTATTAGTCTTTCACTTGTCGTGGGCTTGTGGCTCCCACAGGCGT
ACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAGAAGGC
ATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtgcagga
aggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaaaatgg
CAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAAGGTGAGt
gaagaggacgaaacgagggaggagggagagatggaggaaagggagatgat
gatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatgaggcaT
TTAGGTAG back to topCoding sequence (CDS) from alignment at CM002467.1:88763..91120+ >rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=CDS|length=5778bp|location=Sequence derived from alignment at CM002467.1:88763..91120+ (Nannochloropsis gaditana) ATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTC CCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTC TTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCA GGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATGGC GGTGGCGCggagagaggatgacgaggagggcgctCGATTGAGGAGAGCCT GCGAACAGCTAGAAAgagatagggaggagggagagagggaggtgtggAAT TTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAAGC ATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGAGG GAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGCAA GAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATCGT GAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTgct ctcctgcttccccctcgacctcacCCATCTGCCTCCTGAACGATGCCGAG TGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctggaaagagaggcgaa gGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAG AAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtg caggaaggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaa aatggCAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAAGG TGAGtgaagaggacgaaacgagggaggagggagagatggaggaaagggag atgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatga ggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGC GAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCT TTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTC CTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAA GCTTGGAGATGGCGGTGGCGCggagagaggatgacgaggagggcgctCGA TTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggaggagggagagag ggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACG CCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTA TTGAAAGACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTT CAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCT TGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGT ATCGGCGCCTgctctcctgcttccccctcgacctcacCCATCTGCCTCCT GAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctgg aaagagaggcgaagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCG CCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTC TGAAGAGGAGAtgcaggaaggagaacaaGACGTGGATGAGGTCCTGCTCA GTgaaggggagaaaatggCAGGGGCTTTGGCATCCGAGAACagggaatgg ggaagagACAAGGTGAGtgaagaggacgaaacgagggaggagggagagat ggaggaaagggagatgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGA ctgtggaggatgaggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATT CCTGGCCAGGGGCGAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTA TTTTGATGCTGCTTTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCG ATTCAAGTTTCTCCTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCT CTGCGGGTAGAAAGCTTGGAGATGGCGGTGGCGCggagagaggatgacga ggagggcgctCGATTGAGGAGAGCCTGCGAACAGCTAGAAAgagataggg aggagggagagagggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTC GAGGACGCTCACGCCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGA GGAAATGGCACTATTGAAAGACGAGGGAGTcaggcgggaagaagaatgGA AAGCTGCGATGTTCAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTG CTGGGACGGGTCTTGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCA GTACGACGGGGGTATCGGCGCCTgctctcctgcttccccctcgacctcac CCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCC ATCATGCgtctggaaagagaggcgaagGCGTACCTTCGGAACAATCCTTT AGCAATGGCTGCGCCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGA TGGAGGAGCCGTCTGAAGAGGAGAtgcaggaaggagaacaaGACGTGGAT GAGGTCCTGCTCAGTgaaggggagaaaatggCAGGGGCTTTGGCATCCGA GAACagggaatggggaagagACAAGGTGAGtgaagaggacgaaacgaggg aggagggagagatggaggaaagggagatgatgatggcATGGAGTAAGGAA GGTAAAGAGGTGActgtggaggatgaggcaTTTAGGTAGATGGATACGCC AGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTCCCCGCCTGTGC CTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTCTTACAAAGACG ACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCAGGGCCACGACA GAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATGGCGGTGGCGCgga gagaggatgacgaggagggcgctCGATTGAGGAGAGCCTGCGAACAGCTA GAAAgagatagggaggagggagagagggaggtgtggAATTTGCGGAGCAG GTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAAGCATCTTTGCGTG TCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGAGGGAGTcaggcgg gaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGCAAGAGACTCGAGC GGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATCGTGAATCTCGCTT ATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTgctctcctgcttcc ccctcgacctcacCCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGA ATCGTTGCAGTCCATCATGCgtctggaaagagaggcgaagGCGTACCTTC GGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAGAAGGCATTCGC GAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtgcaggaaggaga acaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaaaatggCAGGGG CTTTGGCATCCGAGAACagggaatggggaagagACAAGGTGAGtgaagag gacgaaacgagggaggagggagagatggaggaaagggagatgatgatggc ATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatgaggcaTTTAGGT AGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGT TCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGG TCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATT CAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATG GCGGTGGCGCggagagaggatgacgaggagggcgctCGATTGAGGAGAGC CTGCGAACAGCTAGAAAgagatagggaggagggagagagggaggtgtggA ATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAA GCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGA GGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGC AAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATC GTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTg ctctcctgcttccccctcgacctcacCCATCTGCCTCCTGAACGATGCCG AGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctggaaagagaggcg aagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGA AGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGA tgcaggaaggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggag aaaatggCAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAA GGTGAGtgaagaggacgaaacgagggaggagggagagatggaggaaaggg agatgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggat gaggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGG GCGAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTG CTTTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTC TCCTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGA AAGCTTGGAGATGGCGGTGGCGCggagagaggatgacgaggagggcgctC GATTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggaggagggagag agggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCA CGCCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCAC TATTGAAAGACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATG TTCAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGT CTTGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGG GTATCGGCGCCTgctctcctgcttccccctcgacctcacCCATCTGCCTC CTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtct ggaaagagaggcgaagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTG CGCCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCG TCTGAAGAGGAGAtgcaggaaggagaacaaGACGTGGATGAGGTCCTGCT CAGTgaaggggagaaaatggCAGGGGCTTTGGCATCCGAGAACagggaat ggggaagagACAAGGTGAGtgaagaggacgaaacgagggaggagggagag atggaggaaagggagatgatgatggcATGGAGTAAGGAAGGTAAAGAGGT GActgtggaggatgaggcaTTTAGGTAG back to top
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