rna5918, rna5918 (mRNA) Nannochloropsis gaditana

Overview
Namerna5918
Unique Namerna5918
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2023
Alignment locationCM002467.1:88763..91120 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100255g5.4987.mrna
Orig protein idgnl|cribi|Naga_100255g5.4987
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:88763..91120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100255g5gene5713Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5918rna5918-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24768.1cds5903Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=mRNA|length=2023bp
ATGGACGACAACACGGAGGAAGTCATCAATGACAGCACCGTAGAAATAAA
GCTTCCAACGGCGCAGTCAGAGAAAATAGGTGCCAATGAACCGGTGGAGC
AGCTGCAGCGACCCACCTGGACGGAAAAGGGAAAAAACGACTTCGTGCAG
CGATTGCCTGAGGAGGCACTCAGTTGCAGCACGCATTCAACACCCCTCCA
GCAAGGCAATCCGACGAAAATAAACGATGAAATATTATCAGCGGACCCAG
GCAACGATCCTAGTTTAAAGAAACGGGAGCGGTGCGAGGAAATGGAGGAC
AAGGACGATTTGATTCCCAAAAAGAGGCCCAAAGAGTTCAAGACGTGGTT
TCCGTCTTCTGCCCACATTAGCACCGCGGTGCCCGTGGCCGTCATGCCAT
CTGCCCTATCCCTGATGGTTGACGAGGGCATCTTGAGGATGGGGGAAGAA
GCCCCGCGGGCGGACACGGACTATTTCGACAAGCGGGTCGTGGACGCGGC
GGCTGTGCGGGCGATTGAGGAGGAACGGGAGGAGAACAAACGGCGACGCC
TGGAGGTCGCCCGGCAACGAGCGGCAGAGGAGCAGCGGGCCCTTGCTGCC
GCCATGGGAGCCTCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC
CCCCTCGTCCCGAAGATTTACGGGAGAAGCAAGGGGAGGAGAGAGGGAAG
CGGGGGGGAAGGGCAATGAAGAAGGTTGTCAGGGTGTGGAAGAAAACGCA
GGAGAGGAAGGAGGAGAAAGTGGCGATAGAAGTGATGAAGAAGGAGAGGA
AAGAGGAGGAAGGGAAAAAGGAGAAGGCCTGATGGGGAGAAGCGGGGGGG
AAAAGGGGCGAGAACAAGGAGAGGGAGCGGCAGAAGAGGAAGGACAAGGA
GGAGGGAAGGAAAGTAGCGGGAAAGAGGAGATGGTGGTGGAGGAGGCGAG
CACGGCGGCCCCTCCTGCCGTGGAAAATGGAGCCCACGCAGATTTGACAC
GTACCCCCCCGGCCTCTTCTTCCCTTCCTCCTTCCCTTCCTCCCTCCTTC
CTTTCCGACTCTTCGTCCTCCTCCCACCCCTCCTCCCTCAATGGTCCTGG
CACGGCGCGCCTCCCCCCTCCTTCTGCCTTCGCCCATCTCGAACAAGTCG
CTTCCCAGCACTTACTCCCACCCCGACCTCTGTCCAACCCTCCCTCCATC
CCTCCCTCCCTGCCTTTGGTCCGGGGCCTGGCCGACATGTCCGGGTACCA
TTCCCTGGAAGAAAGGATGCTGAGGGCCGTCTATCGCGACCTGTGGGAGA
GGGGCTTGACCATCGGAAGCGGAGGGGCCTATGGCGCTGACTTTACTGCC
TACGAAGGCGACCCCATGGCCTTCCACTCCTTCGCCGCGATCATCGTCCT
CCCTGCCTCCTCCCCTCTCTCGGCCCGGGCCCTCTCTGCCAGTGTCCGGC
TGGAACAAAGCGTGGTGAAATTGTTAGTTTACGCCGTCTGCCATCGGAGG
GAGGGAGAGGAGGAGCACATGGAAGGTAGAGGGGAGAAACGGACGGGTGA
AGGGGGGGAGAACGGGGGCGAAGAGAGGGAGAAAGACGTGAGGATGGAAA
CTTCCACTTTTGCCGAGGGAAAAGGTAAAGAGGGAGACGTAGGTACTAGG
GCGGCGATTACACGATTTGGGTGGCCGCGGCGGAGTTATGTGGGTGGTTT
TATGATCGAATACATGACACTAAGGTTCATTTCCGTCACTAGAAGGATGG
AATAAGCCCAGGAAGGGTAGAAGAACAAAGAAATGAACGATCAATTAGCA
GTCTTATTTCCACGTGAAGGATAGAGAAGTGGAAAAGCTGTTAAAGTGAT
GGGGAGGGCCGACCGGCATGATTGTTTGTGAAGTCTTCGACGTGCAGACC
GGGCCTAAAAGGATACGTATTGAGTAGTTTTTTGATAAAGCAGATGACCT
AGATTTGTTTGCTATATATCTAAGAAGGGAAAGGTCTTAAGCTCAATATA
AAGTATACAGTTCAATCACCTAA
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protein sequence of rna5918

>rna5918-protein ID=rna5918-protein|Name=rna5918|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MDTPGRRIPGQGRKRCSPPVPSAPYFDAAFEPGLTKTTSTPDSSFSCHHS
GPRQRKGPLRVESLEMAVARREDDEEGARLRRACEQLERDREEGEREVWN
LRSRLRSLEDAHAFREASLRVQQREEMALLKDEGVRREEEWKAAMFKAQQ
ETRAARELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAE
WRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEM
QEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEERE
MMMAWSKEGKEVTVEDEAFR
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mRNA from alignment at CM002467.1:88763..91120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=mRNA|length=2358bp|location=Sequence derived from alignment at CM002467.1:88763..91120+ (Nannochloropsis gaditana)
ATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTC CCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTC TTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCA GGGCCACGACAGAGGAAAGGTCCTCTGCGGGTGCGAAATGGAAGGACGGA GTGTGGTGTCCCGGGTAAGTGGCATCAAGATGAAGAATTTGGAGGTAGTG GCTGCATGCTTCATGCGTAGGGTGAGTGACAAAAACGACGTCTGTATCAT ACCCTTTTATGGCTCACTTACGCATCGGATTCATTGGatcggaagggagg agcccTGAAAATAatagggagggcgggaaagagagaaggaaagaggaaca gacagaggatgaaaaggaggccgTTCGAGCGCGTCGACGCGCGTTGCTCC AGCAAGAAACTATCATCCAGCTCAAGGCCAAGGTAGAGAGAAATTTTTTG TCTGTAAATGGATTGATAGAAaggtttccccccccccccgagtTGTAGCT TTGCTCACACTTTGGCCAAGAAAAGATCATCTTGAcgtgtcttccttccc tccttcccttcctccctccccggtgAAAAGATCATCTTGAcgtgtccttc cttcctttcttccctacttcccttcctctctccctccctccctggtgctA ACAGGTAGAAAGCTTGGAGATGGCGGTGGCGCggagagaggatgacgagg agggcgctCGATTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggag gagggagagagggaggtgtggAATTTGCGGAGCAGgtggatagggaggga gggagggagggagggagggagggagagaaggagggatgaaagagGGACTG GAAGTGGAGCACGGAAATACATAGAGGGTGCATCGTTCACAGCCTAGCTC ATTCGCTTGGCTGGTGACGTGCAAGCAAGCTCGTTGGTAACTTCGTAATG Accagtcctccctcccttctccctgcctcccttcctccttccccccctcc ctccctcctaccctctaGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTC GGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAA GACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGC GCAGCAAGAGACTCGAGCGGCGGTccggggctgggaggaggcgaagaggg agctGAGAGTCCtgcggagggaagcgagggagggagggagggagggaagg gcgatgggaaaaggaagggaggaaggaggatatggtgtggaggtggggac gcaagggaggagtcggggggctgggggaaggaggaaggaggatccCCAAC GGAGAAGGGTAAGCACGGCCACAGCGAGCACACAAACACGGGGACCGCAA acaggcgaaggagggagggagggagggagggagggagggagggagggagg ggggaagactgGAGGCAGCGTGCgacggaggcagaggaagcgcTTGTGAA GATGGCggcgagggtggaggacaagcaGTGGGCGTATTGGAAACAGCGGG AGCTGCTGGGACGGGTCTTGGAGGTAGGGGAGAAAGGTTTCGGgggggcg cagggagggagggacggaggaagggaaggatcaCGACCTTTACCCTCCTT GTGCGCCCCTCTCCCATTTTCaagtcctccctcacctccgccttgggctc tcccctcctcttttctctagGATATCGTGAATCTCGCTTATTCAGAGGCC CAGTACGACGGGGGTATCGGCGCCTgctctcctgcttccccctcgacctc acCCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGT CCATCATGCgtctggaaagagaggcgaaggTGAGGGGGTAGGAatagggg gaggggagggcggataTGCATGTTATCATACCTGAAAAGGTATATATTAA CTATATTATTAGTCTTTCACTTGTCGTGGGCTTGTGGCTCCCACAGGCGT ACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAGAAGGC ATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtgcagga aggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaaaatgg CAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAAGGTGAGt gaagaggacgaaacgagggaggagggagagatggaggaaagggagatgat gatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatgaggcaT TTAGGTAG
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Coding sequence (CDS) from alignment at CM002467.1:88763..91120+

>rna5918 ID=rna5918|Name=rna5918|organism=Nannochloropsis gaditana|type=CDS|length=5778bp|location=Sequence derived from alignment at CM002467.1:88763..91120+ (Nannochloropsis gaditana)
ATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTC
CCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTC
TTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCA
GGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATGGC
GGTGGCGCggagagaggatgacgaggagggcgctCGATTGAGGAGAGCCT
GCGAACAGCTAGAAAgagatagggaggagggagagagggaggtgtggAAT
TTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAAGC
ATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGAGG
GAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGCAA
GAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATCGT
GAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTgct
ctcctgcttccccctcgacctcacCCATCTGCCTCCTGAACGATGCCGAG
TGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctggaaagagaggcgaa
gGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAG
AAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtg
caggaaggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaa
aatggCAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAAGG
TGAGtgaagaggacgaaacgagggaggagggagagatggaggaaagggag
atgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatga
ggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGC
GAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCT
TTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTC
CTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAA
GCTTGGAGATGGCGGTGGCGCggagagaggatgacgaggagggcgctCGA
TTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggaggagggagagag
ggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACG
CCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTA
TTGAAAGACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTT
CAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCT
TGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGT
ATCGGCGCCTgctctcctgcttccccctcgacctcacCCATCTGCCTCCT
GAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctgg
aaagagaggcgaagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCG
CCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTC
TGAAGAGGAGAtgcaggaaggagaacaaGACGTGGATGAGGTCCTGCTCA
GTgaaggggagaaaatggCAGGGGCTTTGGCATCCGAGAACagggaatgg
ggaagagACAAGGTGAGtgaagaggacgaaacgagggaggagggagagat
ggaggaaagggagatgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGA
ctgtggaggatgaggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATT
CCTGGCCAGGGGCGAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTA
TTTTGATGCTGCTTTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCG
ATTCAAGTTTCTCCTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCT
CTGCGGGTAGAAAGCTTGGAGATGGCGGTGGCGCggagagaggatgacga
ggagggcgctCGATTGAGGAGAGCCTGCGAACAGCTAGAAAgagataggg
aggagggagagagggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTC
GAGGACGCTCACGCCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGA
GGAAATGGCACTATTGAAAGACGAGGGAGTcaggcgggaagaagaatgGA
AAGCTGCGATGTTCAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTG
CTGGGACGGGTCTTGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCA
GTACGACGGGGGTATCGGCGCCTgctctcctgcttccccctcgacctcac
CCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCC
ATCATGCgtctggaaagagaggcgaagGCGTACCTTCGGAACAATCCTTT
AGCAATGGCTGCGCCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGA
TGGAGGAGCCGTCTGAAGAGGAGAtgcaggaaggagaacaaGACGTGGAT
GAGGTCCTGCTCAGTgaaggggagaaaatggCAGGGGCTTTGGCATCCGA
GAACagggaatggggaagagACAAGGTGAGtgaagaggacgaaacgaggg
aggagggagagatggaggaaagggagatgatgatggcATGGAGTAAGGAA
GGTAAAGAGGTGActgtggaggatgaggcaTTTAGGTAGATGGATACGCC
AGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGTTCCCCGCCTGTGC
CTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGGTCTTACAAAGACG
ACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATTCAGGGCCACGACA
GAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATGGCGGTGGCGCgga
gagaggatgacgaggagggcgctCGATTGAGGAGAGCCTGCGAACAGCTA
GAAAgagatagggaggagggagagagggaggtgtggAATTTGCGGAGCAG
GTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAAGCATCTTTGCGTG
TCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGAGGGAGTcaggcgg
gaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGCAAGAGACTCGAGC
GGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATCGTGAATCTCGCTT
ATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTgctctcctgcttcc
ccctcgacctcacCCATCTGCCTCCTGAACGATGCCGAGTGGAGAAAAGA
ATCGTTGCAGTCCATCATGCgtctggaaagagaggcgaagGCGTACCTTC
GGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGAAGAAGGCATTCGC
GAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGAtgcaggaaggaga
acaaGACGTGGATGAGGTCCTGCTCAGTgaaggggagaaaatggCAGGGG
CTTTGGCATCCGAGAACagggaatggggaagagACAAGGTGAGtgaagag
gacgaaacgagggaggagggagagatggaggaaagggagatgatgatggc
ATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggatgaggcaTTTAGGT
AGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGGGCGAAAGCGGTGT
TCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTGCTTTTGAGCCAGG
TCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTCTCCTGCCATCATT
CAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGAAAGCTTGGAGATG
GCGGTGGCGCggagagaggatgacgaggagggcgctCGATTGAGGAGAGC
CTGCGAACAGCTAGAAAgagatagggaggagggagagagggaggtgtggA
ATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCACGCCTTTCGGGAA
GCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCACTATTGAAAGACGA
GGGAGTcaggcgggaagaagaatgGAAAGCTGCGATGTTCAAGGCGCAGC
AAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGTCTTGGAGGATATC
GTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGGGTATCGGCGCCTg
ctctcctgcttccccctcgacctcacCCATCTGCCTCCTGAACGATGCCG
AGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtctggaaagagaggcg
aagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTGCGCCATCATGGGA
AGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCGTCTGAAGAGGAGA
tgcaggaaggagaacaaGACGTGGATGAGGTCCTGCTCAGTgaaggggag
aaaatggCAGGGGCTTTGGCATCCGAGAACagggaatggggaagagACAA
GGTGAGtgaagaggacgaaacgagggaggagggagagatggaggaaaggg
agatgatgatggcATGGAGTAAGGAAGGTAAAGAGGTGActgtggaggat
gaggcaTTTAGGTAGATGGATACGCCAGGCCGACGGATTCCTGGCCAGGG
GCGAAAGCGGTGTTCCCCGCCTGTGCCTTCCGCTCCTTATTTTGATGCTG
CTTTTGAGCCAGGTCTTACAAAGACGACGAGCACTCCCGATTCAAGTTTC
TCCTGCCATCATTCAGGGCCACGACAGAGGAAAGGTCCTCTGCGGGTAGA
AAGCTTGGAGATGGCGGTGGCGCggagagaggatgacgaggagggcgctC
GATTGAGGAGAGCCTGCGAACAGCTAGAAAgagatagggaggagggagag
agggaggtgtggAATTTGCGGAGCAGGTTGAGAAGTCTCGAGGACGCTCA
CGCCTTTCGGGAAGCATCTTTGCGTGTCCAGCAGCGCGAGGAAATGGCAC
TATTGAAAGACGAGGGAGTcaggcgggaagaagaatgGAAAGCTGCGATG
TTCAAGGCGCAGCAAGAGACTCGAGCGGCGCGGGAGCTGCTGGGACGGGT
CTTGGAGGATATCGTGAATCTCGCTTATTCAGAGGCCCAGTACGACGGGG
GTATCGGCGCCTgctctcctgcttccccctcgacctcacCCATCTGCCTC
CTGAACGATGCCGAGTGGAGAAAAGAATCGTTGCAGTCCATCATGCgtct
ggaaagagaggcgaagGCGTACCTTCGGAACAATCCTTTAGCAATGGCTG
CGCCATCATGGGAAGAAGGCATTCGCGAGGGCGAATTGATGGAGGAGCCG
TCTGAAGAGGAGAtgcaggaaggagaacaaGACGTGGATGAGGTCCTGCT
CAGTgaaggggagaaaatggCAGGGGCTTTGGCATCCGAGAACagggaat
ggggaagagACAAGGTGAGtgaagaggacgaaacgagggaggagggagag
atggaggaaagggagatgatgatggcATGGAGTAAGGAAGGTAAAGAGGT
GActgtggaggatgaggcaTTTAGGTAG
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Synonyms
Publications