EWM24768.1, cds5903 (CDS) Nannochloropsis gaditana

Overview
NameEWM24768.1
Unique Namecds5903
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:88763..88942 +
Alignment locationCM002467.1:89467..89597 +
Alignment locationCM002467.1:89831..89984 +
Alignment locationCM002467.1:90359..90385 +
Alignment locationCM002467.1:90533..90691 +
Alignment locationCM002467.1:90809..91120 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24768.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100255g5.4987.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:88763..88942 +
CM002467.1supercontigCM002467.1:89467..89597 +
CM002467.1supercontigCM002467.1:89831..89984 +
CM002467.1supercontigCM002467.1:90359..90385 +
CM002467.1supercontigCM002467.1:90533..90691 +
CM002467.1supercontigCM002467.1:90809..91120 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24768.1 vs. NCBI_GenBank
Match: gi|585106333|gb|EWM24768.1| (hypothetical protein Naga_100255g5 [Nannochloropsis gaditana])

HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 
Query:    1 MDTPGRRIPGQGRKRCSPPVPSAPYFDAAFEPGLTKTTSTPDSSFSCHHSGPRQRKGPLRVESLEMAVARREDDEEGARLRRACEQLERDREEGEREVWNLRSRLRSLEDAHAFREASLRVQQREEMALLKDEGVRREEEWKAAMFKAQQETRAARELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAEWRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEEREMMMAWSKEGKEVTVEDEAFR 320
            MDTPGRRIPGQGRKRCSPPVPSAPYFDAAFEPGLTKTTSTPDSSFSCHHSGPRQRKGPLRVESLEMAVARREDDEEGARLRRACEQLERDREEGEREVWNLRSRLRSLEDAHAFREASLRVQQREEMALLKDEGVRREEEWKAAMFKAQQETRAARELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAEWRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEEREMMMAWSKEGKEVTVEDEAFR
Sbjct:    1 MDTPGRRIPGQGRKRCSPPVPSAPYFDAAFEPGLTKTTSTPDSSFSCHHSGPRQRKGPLRVESLEMAVARREDDEEGARLRRACEQLERDREEGEREVWNLRSRLRSLEDAHAFREASLRVQQREEMALLKDEGVRREEEWKAAMFKAQQETRAARELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAEWRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEEREMMMAWSKEGKEVTVEDEAFR 320
[Close]
BLAST of EWM24768.1 vs. NCBI_GenBank
Match: gi|553184521|ref|XP_005854103.1| (hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526] >gi|422294960|gb|EKU22259.1| hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.21 bits (635), Expect = 1.022e-79
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0 
Query:  156 RELLGRVLEDIVNLAYSEAQYDGGIGACSPASPSTSPICLLNDAEWRKESLQSIMRLEREAKAYLRNNPLAMAAPSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMAGALASENREWGRDKVSEEDETREEGEMEEREMMMAWSKEGKEVTVEDEAFR 320
            RELLGRVLEDIVNLAYSEAQYDG IGACSPASPSTSPICLLNDAEWRKESL+SIMRLEREAKA LRNNPLAMA PSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKM GALASENREWGRDKVSE+DETREEGEMEEREMMMAWSKE KEVT+EDEAFR
Sbjct:   16 RELLGRVLEDIVNLAYSEAQYDGAIGACSPASPSTSPICLLNDAEWRKESLRSIMRLEREAKACLRNNPLAMAVPSWEEGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMEGALASENREWGRDKVSEDDETREEGEMEEREMMMAWSKEDKEVTLEDEAFR 180
The following BLAST results are available for this feature:
BLAST of EWM24768.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106333|gb|EWM24768.1|0.000e+0100.00hypothetical protein Naga_100255g5 [Nannochloropsi... [more]
gi|553184521|ref|XP_005854103.1|1.022e-7995.15hypothetical protein NGA_0470100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5918rna5918Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications