rna5910, rna5910 (mRNA) Nannochloropsis gaditana

Overview
Namerna5910
Unique Namerna5910
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length832
Alignment locationCM002467.1:59548..60844 +

Link to JBrowse

Properties
Property NameValue
ProductNucleolar protein 12
Orig transcript idgnl|cribi|Naga_100446g3.6000.mrna
Orig protein idgnl|cribi|Naga_100446g3.6000
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:59548..60844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100446g3gene5705Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5910rna5910-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24780.1cds5895Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5910 ID=rna5910|Name=rna5910|organism=Nannochloropsis gaditana|type=mRNA|length=832bp
GATGCCTGGAGGGCACTTCGCATGTGTACCTTGAATGACACAAATGTAAT
TTTAACCCGCTCCCACGCTCCTCATACGCAGACTCGACGAAATAAATGAC
CACCAACTCCAACGATGGGAGCAGCTATGGAAGCTCAGGTCCTTCCAGGC
CACCAGCATCACCTCCCTCCCGTGTCGATGGGGAAGAACTCGCTCCCTCA
GCGTCCCGCCCCTCCCCGCTTTGCTTGGATGGGGAGGCCACTGACGCCGC
CGCAAAAATGGAAAAGGAAGATGCTGCTTCGATCATCGGCGTAGCAGGGG
TCTCCGGAACGCCTTCGTTGGAGAGCACCGTGCCGGAAGGGAATACGACG
GAGAAGCCTCCAGAGGAAGACGTGGATTTGAGTAACTTGATGACCCTGTT
ATTTCAGCATCTTCGCACTGATGAGGGTCGGGCTGAATTCCAACGCTTGG
TCGATGCCGAGGAAGCGAAAGAAGGCGCAGAAGAGTGCCAGGAGGTAAAG
GATCGGGAAGAGATTGACAGACCGAGAACCGAAGGTGGAGACGCGGAGGA
CGGGCATGCAGCTTCGTCGGTTACGACCGTGGAAAGCACATAATTCTACG
TTTCAGACTTTCTAGCGTAATGTTATAATGAAGAGCTTTGTAATTTTGCT
TTACACAAAATCAGAAGCAATCGAGCTTGATGGGTGGCTTTGAGCCAGCG
AAGCGAAAATTGCATGTACAACCACAAGAGTATGCGACGATCTTTTCTTT
TCTTTGTCTCCGTAGATAATAAAACTATTAATATGCGGGGCTTTTTGTAG
ACATGATTTCCAGAATATAATCGCATTACGAC
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protein sequence of rna5910

>rna5910-protein ID=rna5910-protein|Name=rna5910|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEA
RREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLP
ASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTT
SFGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKM
PAKPKKKGGKERTKQNTSGSYMPKGKGQGEEDKKTGKKKKRGKR
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mRNA from alignment at CM002467.1:59548..60844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5910 ID=rna5910|Name=rna5910|organism=Nannochloropsis gaditana|type=mRNA|length=1297bp|location=Sequence derived from alignment at CM002467.1:59548..60844+ (Nannochloropsis gaditana)
GTAGACACAGAGCACTGGGAATACTTTTCATCTCCTTGTCGGACTGAGTT
CATCGTGGACAGATTTTTCTACAAAATAGGAAACGCCTTGGGAAACTTTA
AGAGAGGTGAAATTATTTTGAGTTTTGGAGCCTCCGCATGCCTTCCATTG
CTTTACAACAACCTTCAATTGCCCCATACCCGAGGACTTTTCAATTTAAC
AGCGCTGTCTTTTTTCTCATTCGTACGCAATGATAATAAATTCCACCGCA
TTTAGGCCTTTGCGAGTTTCAAACTGCTTTGACCATCCTATACTTTTTCT
GTTGTGGCGCCACCCTTCACGAAGATCGGCGGCGcatgtctcctccctcc
ccccgaaaTGGAAGCAACACAGAAAGGCAGTGTCCGACGACGAAAACGCA
AGGTCAAAGGCACACGCACGCAAGATTGAAAATCGGCGGCTAcaaaaaaa
atggaaaactcgccctcgtcttcgACCCCGAGGCCCGCCGGGAATATTTG
ACTGGCTTCAGCAAACGCAAAAAAGAACGGAGGACGTTCGGTCTGGCCAT
GCAACAGGTGAAAAATCGGAAAGCACGGCttatggaaagggaggagttgC
GCAAGGCGAAAAAAGGGGCTTTGGATGACTTGCCGGCGTCCATAAAAGGA
GCGGAACCCTACCTCTCAGGGACAGCTCTGGCgaatggaaaagaaaagga
gacaatGGAAACAaaagcgaaggaagaggtatATGACGACCGATTCACTA
CGGCCACATTTGGGGAGTCAGTGTTGGTCACAACCTCTTTTGGCATTCCA
TCCggtgacgaggaagatgaggagggaggggtcctCGCCATGGTccgaga
ggagaggaaaggcggcgGAGTCGACAAAGAGCAGCTGCAAGCAGGATCGG
TGGCACATTTTAAAAAACTAGTGGCGGGAAAAATGCCTGCGAAACCGAAG
AAaaaaggtgggaaggagaggacgaagcaGAATACGTCGGGATCCTACAT
GCccaaagggaaggggcagggagaggaagacaagaagacaggaaagaaaa
agaagagaggaaaacgTTGAGATTCGATGGAAAGAATGTCTGAATAAGGG
CGAGGCTTGAATGATGTGTAAATGAAGGGTCAGAAATTGGAAATTCAGGG
GTGAAGCTATGAGCTTTCATCACTGTCGGGCTGTCGCCGCCATGAAAAAA
ATGTGCAGTAATGACAAGGTAATGCAACGTCCTCGATCGGTTAATATGAT
GGTAAAATCGTTGCACGTTCATCTTTATAATCCTTATATTTTACCGC
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Coding sequence (CDS) from alignment at CM002467.1:59548..60844+

>rna5910 ID=rna5910|Name=rna5910|organism=Nannochloropsis gaditana|type=CDS|length=735bp|location=Sequence derived from alignment at CM002467.1:59548..60844+ (Nannochloropsis gaditana)
atgtctcctccctccccccgaaaTGGAAGCAACACAGAAAGGCAGTGTCC
GACGACGAAAACGCAAGGTCAAAGGCACACGCACGCAAGATTGAAAATCG
GCGGCTAcaaaaaaaatggaaaactcgccctcgtcttcgACCCCGAGGCC
CGCCGGGAATATTTGACTGGCTTCAGCAAACGCAAAAAAGAACGGAGGAC
GTTCGGTCTGGCCATGCAACAGGTGAAAAATCGGAAAGCACGGCttatgg
aaagggaggagttgCGCAAGGCGAAAAAAGGGGCTTTGGATGACTTGCCG
GCGTCCATAAAAGGAGCGGAACCCTACCTCTCAGGGACAGCTCTGGCgaa
tggaaaagaaaaggagacaatGGAAACAaaagcgaaggaagaggtatATG
ACGACCGATTCACTACGGCCACATTTGGGGAGTCAGTGTTGGTCACAACC
TCTTTTGGCATTCCATCCggtgacgaggaagatgaggagggaggggtcct
CGCCATGGTccgagaggagaggaaaggcggcgGAGTCGACAAAGAGCAGC
TGCAAGCAGGATCGGTGGCACATTTTAAAAAACTAGTGGCGGGAAAAATG
CCTGCGAAACCGAAGAAaaaaggtgggaaggagaggacgaagcaGAATAC
GTCGGGATCCTACATGCccaaagggaaggggcagggagaggaagacaaga
agacaggaaagaaaaagaagagaggaaaacgTTGA
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Synonyms
Publications