EWM24780.1, cds5895 (CDS) Nannochloropsis gaditana

Overview
NameEWM24780.1
Unique Namecds5895
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:59883..60617 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24780.1
ProductNucleolar protein 12
Orig transcript idgnl|cribi|Naga_100446g3.6000.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:59883..60617 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12
Homology
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|585106353|gb|EWM24780.1| (Nucleolar protein 12 [Nannochloropsis gaditana])

HSP 1 Score: 488.804 bits (1257), Expect = 1.517e-174
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEEDKKTGKKKKRGKR 244
            MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEEDKKTGKKKKRGKR
Sbjct:    1 MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEEDKKTGKKKKRGKR 244          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|553193713|ref|XP_005855822.1| (rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526] >gi|422293238|gb|EKU20538.1| rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.238 bits (552), Expect = 5.304e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
Query:    1 MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKG 105
            MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKG
Sbjct:   28 MSPPSPRNGSNTERQCPTTKTQGQRHTHARLKIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKG 132          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|397594026|gb|EJK56126.1| (hypothetical protein THAOC_24044 [Thalassiosira oceanica])

HSP 1 Score: 102.064 bits (253), Expect = 1.475e-22
Identity = 77/219 (35.16%), Postives = 117/219 (53.42%), Query Frame = 0
Query:   36 YKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLP----ASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPK--KKGGKERTKQNTSGSYMPKGKGQGEEDKKTGK-----KKKRGK 243
            + ++ K+ + F+PE RR YLTG S RKKERR FGLAMQ+VK+R+A++ ER+E R+A+   ++D+     A  +G +  +   + A  + K   + + +   + D  T + FG  V VTT++G+P  D+   +       RE      VD+ Q QAG+V  +   V G M ++ K  K GG    ++ T G+   KG G   E K   K     K KRGK
Sbjct:   29 FPRHRKVEISFNPEDRRGYLTGLSARKKERRAFGLAMQKVKDRQAKIEERKEQRQAQLEKIEDIERNKKALRRGQDGEVEAGSDAESESKLGQDIERESHTFQDDQTRSQFGGLVSVTTTYGMPEDDDSVTDDRHDFYSRETHDSNHVDEAQKQAGNVNSYIAKVKGSMGSRKKHQKSGG----RKGTHGASTMKGMGNANEMKMAKKTLAKYKAKRGK 243          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|223997790|ref|XP_002288568.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975676|gb|EED94004.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 101.679 bits (252), Expect = 3.277e-22
Identity = 78/192 (40.62%), Postives = 94/192 (48.96%), Query Frame = 0
Query:   41 KLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMER------------------EELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDE--EGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPK--KKGGK 210
            K+ + FD   R EYLTGFS RKKERR FGLAMQ+VK+R+A+L ER                  EELRK   G  DD        E   S     N KE  T         + D  TT  FG  V VTT+FGIPS DE+D+          RE+     VD  Q +AG V ++   V G M +K K  K+GGK
Sbjct:   42 KVEITFDKSNREEYLTGFSTRKKERRAFGLAMQKVKDRQAKLEERKDNREAQLEKVEEIERNKEELRKGVAGE-DDSDDDAGSYEEQASSAPQHNEKEMHT---------FQDERTTHQFGGLVSVTTTFGIPSDDEDDDVINSKRAFYEREQHGSSHVDTAQKRAGDVQNYIASVKGTMGSKKKNAKQGGK 223          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|219122978|ref|XP_002181812.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407088|gb|EEC47026.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.2705 bits (212), Expect = 1.776e-16
Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 0
Query:   44 LVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEK--------ETMETKAKEEV-----YDDRFTTATFGESVLVTTSFGIPSGDEEDEEGGVLAMVREER---------------KGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKK 206
            +VFDP+AR+ YL GFS RK+ERR +GLAMQ+VK+RKA+L +R E++KA    L+ +  + +  E  LSG     G  +        ET  ++ +E V     Y D  T + +G +V+VTTS  +P   +++++G        +                K   VD  Q  AG+V  F   + GK+P K K+
Sbjct:   21 IVFDPQARQAYLQGFSTRKRERRVYGLAMQKVKDRKAKLEQRAEMKKA---VLEQIEEAEQQKEDLLSGILEEIGGPRLPTASPATETHNSRMEEPVEHVQTYQDEATQSHWGGAVIVTTSTRLPDDSDDEDDGDERQHHHHKSNTQTTQPHQNPDRRAKKKSVDAAQQYAGNVERFMNELKGKIPGKKKR 208          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|1210522513|dbj|GAX18526.1| (hypothetical protein FisN_10Hu274 [Fistulifera solaris])

HSP 1 Score: 82.4185 bits (202), Expect = 1.925e-15
Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 0
Query:   41 KLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKA-----------KKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTS---FGIPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKK 206
            K  + FDPE+R++YL GFS+RK++RR FGLAMQ+VK+RKA+L +R E + A           K   L+ L  S      +L  +  A     E ++T    ++Y D  T + +G  V+VTTS   FG       +E+  V       +K  G D  Q  AG+V  F   + G +P K KK
Sbjct:   18 KTEITFDPESRKDYLQGFSQRKQQRRAFGLAMQKVKDRKAKLEKRAERKDALQEQMEQAEQQKAQVLESLLES--QPNEWLKTSLPAKPLAPEPVDT---VKLYQDTETKSCWGGEVIVTTSTKMFG-------EEDSVVDETTHHNKKKKGKDAAQEYAGNVERFMHELKGNLPGKKKK 185          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|1173952717|gb|OQS00328.1| (hypothetical protein THRCLA_06017, partial [Thraustotheca clavata])

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0
Query:   42 LALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKA-KKGALDDLP--ASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDE 162
            + + FD E R+EYLTGFSKRK ERR FG  M+  K +KA L+E  ++RKA +K  L+ LP  A +K          +A  K+ E +E       Y+D  T   FG +V VTT+ G    D EDE
Sbjct:   13 VIVSFDAEKRKEYLTGFSKRKLERRRFGHDMEAFKKQKA-LIEARKMRKAEQKKLLESLPEVAEVK---------VVAEDKDTEVVE-------YNDEHTQGKFGHAVTVTTTVGELKSDSEDE 119          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|1173935302|gb|OQR86439.1| (hypothetical protein ACHHYP_10536 [Achlya hypogyna])

HSP 1 Score: 74.7146 bits (182), Expect = 1.091e-12
Identity = 72/208 (34.62%), Postives = 107/208 (51.44%), Query Frame = 0
Query:   38 KNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKA-KKGALDDLP--ASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFG-----IPSGDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAK-PKKKGGKERTKQNT---SGSYMP-KGKGQGEED 232
            K  KL + FD + R++YLTGFSKRK+ERR FG  M+  K +KA L+E+ ++RKA +K  L+ LP  A +K          +A  K+KE M        +DD  T   FG  V VTT  G           E+E   +LA + ++++    DK+      + H +K +A  +P+K  K K  +E   +N    +    P KGKG G++D
Sbjct:    9 KKSKLVVTFDADKRKDYLTGFSKRKQERRRFGHDMEAFKKQKA-LIEQRKIRKAEQKKLLESLPEVADVK---------QVAEDKDKEVMS-------FDDAHTQDKFGNVVTVTTMVGDLKSDSEDELSEEENEQLLAHLAKKKERASRDKQMTLFQRIQHKRKGLA--LPSKRSKMKAARENAARNKGKGAKVVAPKKGKGAGDDD 197          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|953498363|emb|CEG40001.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 75.0998 bits (183), Expect = 1.578e-12
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 0
Query:   37 KKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPY---LSGTALANGKEKETMETKA--KEEVYDDRFTTATFGESVLVTTSFGIPSGDEED----EEGGVLAMVREERKGGGVDKEQ 183
            +K  KL + FDP+ R+EYLTGF KRK+ERR FGL M+  K +K +L    E+++ ++    ++ A++   + Y               +    KA  K E ++D FT   FG+ V VTTS G    + +D    E    +    +++K GG DKEQ
Sbjct:   21 RKKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKTKKRQL----EIKRQRREEQKEMMAALNLLDDYKKRDEEENDDLDDGDDACSAKAVTKIETFNDSFTQGKFGDIVTVTTSVGNLQSESDDSCEEETDESIHSAFQQKKSGG-DKEQ 171          
BLAST of EWM24780.1 vs. NCBI_GenBank
Match: gi|675173781|ref|XP_008895775.1| (hypothetical protein PPTG_03760 [Phytophthora parasitica INRA-310] >gi|568103382|gb|ETN18039.1| hypothetical protein PPTG_03760 [Phytophthora parasitica INRA-310])

HSP 1 Score: 74.3294 bits (181), Expect = 4.849e-12
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 0
Query:   37 KKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARL---MEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKET------METKAKEEVYDDRFTTATFGESVLVTTSFGI-------------PSGDEEDEE 163
            +K  KL + FDP+ R+EYLTGF KRK+ERR FGL M+  K +K +L    +R E +K K  AL+ L    K  E      + ++G + ET       +   K E ++D FT   FG+ V V TS G              PS DEE+ +
Sbjct:   37 RKKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKVKKRQLEAKKQRREEQKEKLAALNLLDDDKKDEEEESEAESESDGSDNETKLVLGGAKAVTKVETFNDDFTQGKFGDVVTVMTSVGDLQSDSDDSGSDLEPSDDEEEAD 185          
The following BLAST results are available for this feature:
BLAST of EWM24780.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106353|gb|EWM24780.1|1.517e-174100.00Nucleolar protein 12 [Nannochloropsis gaditana][more]
gi|553193713|ref|XP_005855822.1|5.304e-69100.00rrna processing protein rrp17, partial [Nannochlor... [more]
gi|397594026|gb|EJK56126.1|1.475e-2235.16hypothetical protein THAOC_24044 [Thalassiosira oc... [more]
gi|223997790|ref|XP_002288568.1|3.277e-2240.63predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219122978|ref|XP_002181812.1|1.776e-1634.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210522513|dbj|GAX18526.1|1.925e-1535.56hypothetical protein FisN_10Hu274 [Fistulifera sol... [more]
gi|1173952717|gb|OQS00328.1|8.393e-1341.94hypothetical protein THRCLA_06017, partial [Thraus... [more]
gi|1173935302|gb|OQR86439.1|1.091e-1234.62hypothetical protein ACHHYP_10536 [Achlya hypogyna... [more]
gi|953498363|emb|CEG40001.1|1.578e-1233.97Uncharacterized conserved protein [Plasmopara hals... [more]
gi|675173781|ref|XP_008895775.1|4.849e-1236.91hypothetical protein PPTG_03760 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5910rna5910Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications