rna5900, rna5900 (mRNA) Nannochloropsis gaditana

Overview
Namerna5900
Unique Namerna5900
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1330
Alignment locationCM002467.1:30242..32128 -

Link to JBrowse

Properties
Property NameValue
Productglycoprotein fp21
Orig transcript idgnl|cribi|Naga_100725g3.710.mrna
Orig protein idgnl|cribi|Naga_100725g3.710
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:30242..32128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100725g3gene5695Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5900rna5900-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24786.1cds5885Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5900 ID=rna5900|Name=rna5900|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp
TGTCTGACTAGCCTTATTGTTCCGGAAGAGAGAGAGAAGAAGACACACCA
TAAATTATAAATCTGTTAAAAGGACGTGGATCTGATTATCAATCCACATG
TCACCGTTTTCAAAATCCTTCATACTTACATTAGTCCACCTACTTTCTGT
CTCACTCAGGTCTCAATAAAGCTTTCATCCGCAAAAGCGTCATCTATGCA
TTCCTACAAGTTCTTCCTTGCAGCTATCATCCTTGCTCGGGAGGTATATG
CCCAAAAATCAGTTTTAGCGGTCAAACCAACTCTTAATGCAAGTCAAGCC
ATGACTTTAAATTATGTCGATCCGCCCGCAAGCATAATCCTCAACACACG
GGACTTCCCTATCCAAATGGCCTACACCGATATTCCTGAAGGCTTGATTA
TGGACTTGCACGTGGACTTGATCGGAGACAACAGTTGGTTCGGCGGAGGT
CTCAAGCAAGTGGAGGGTCCCGACGGAACCGTGACGGTGCCCATCGAGGT
CCGCGTGCCCTCGTATATCGCCGGTAACCTTTCGGTGCACGCTTTCCTCA
CGCCGGCCGGAGGGAGTTTTCAGGCACGGGTGGCCAATGCCCCCGAATTG
GAGGTGGGTATCGACCGCACTCCCGTCAACGCCATCGGGGTCTTGTGCCA
GCCACGCGCCGTGCAGCCCGGCCAGCCCTTCGTCGTTAACCTCTGGTTCA
CGCAGACGCACCCGCGGCCCATGGACTTGATCGCGGTGGCGCTCGACGGG
GACACGAAGGAGTACTATGGAGGGTTCCAGGTCCCCGTCAAAGCACAGCA
GGGCCACGTGTCTGGCCGCTTCGATCTGCGCCCCGCCCCCCTCACGGCCC
CCCTCAAATTCAAGGCGTGGCTCTCCCCTCGTGGGGAGGTGGCGCCGAAC
TACGTCACGTACACCATGCTCAACATCCCCCTTGGCCCCGAAACGGTACA
GCCGTGCAATCCCGATCCCGACAACGAGTGGACAGAGACCGGGATCCCTC
CCGCCAACTGGGTCGAGCTCCACGACGTGCCCAAGGTCCTGACACCGGGA
GAGAAGGCCAACATCCGTTTGGTCTACAACCTGGTGCCCGAATCGCAAAA
AGCAGCCACCAACGCCACCGTCTCCCTCATGATGTGGGACTGGAAGGTGC
GCCTGCCTCCTTCTTTCTTCCTTTCCGTCTTTCCTCCCTCCTTGATTCAA
AGCATGCCTCCCCGCGGATCCCACTTCTGCAACATATGTCCCGTGTCACG
GCCTTCGACGACAGCACCCATCCCCATTCCCAACCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
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protein sequence of rna5900

>rna5900-protein ID=rna5900-protein|Name=rna5900|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MNVRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSV
EKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYR
DLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQE
EEKVRRETHSILSMGG
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mRNA from alignment at CM002467.1:30242..32128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5900 ID=rna5900|Name=rna5900|organism=Nannochloropsis gaditana|type=mRNA|length=1887bp|location=Sequence derived from alignment at CM002467.1:30242..32128- (Nannochloropsis gaditana)
GTCGAAGCCCGCCATCTCTCTCCATATAGCTAAGCAATGCGATCATCGAT
TCACTCCAAGGCTCCCTTTTTTTCTTCACAAAAAGCATGAATGTCCGCAT
CGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTTTGC
TCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGATTGC
GGTAAGTAAGCGAAGGAATGGTAATCTTATTGTTGGAGTTTCTTTTGAAT
GATACTATTATATACATGAGGGAGAAAAATATGTGCTTATCGAGTCCGAA
GCTGATGTCATGTTTGCACAGCGGTTCGAGGGTGTACATCCTGAGTCTCT
TGACGTGTGGGCGACTCGTGAAAGAAAGCCGGCCCCGGAGCTCACCTTTT
TCCTTCATCCCGCTTCTTTAAGGAGAAGATGAGCGTACATTGGAGCTTCC
TTCCGTGGAGAAGACGGCCTTTGAGTACGTCATGCGATTTTTGAGAGTGC
ACGCGGCAACCCCCCTGCAGGATATCCCCAAGGTGCGTCGAGATTATGAT
TAAAATCGAGCAGGGAGGCAGGAGGAAACGAAGGAAAAGAGGAAGAAGGG
AAAGAAGACCCTGCCTGTCTAAGGAGTAACCCTACACGAGAGCATGGTTC
CTTGTATGAGAAGTGGATGTTGGGTCCACCGGAGAGGAGAAGCAAATCTC
TTTCTCAACCATGAGCCTTATCTCGCTCTTTCACGTCCTCATTCCATTCC
CTCCATTTATTCCCGCAGCCGATCCTAGAAAACAGTCTGGGTGAGATAGT
GCAAAAGGAGTACAGCGAATTTATCGAGTCCTTACCCTATCGGGACCTTG
TTCAGGTGCGATGACCCCTACGTCTTTTTGTAGCAGTGCTGCTCTCAGAG
CGGACAAGACTTCTTCCCTTTTCCTTTTTGTGCCTGACTTGCTTTGCATT
TAATTACCGCCACGCCTTATCTTCGACTCGTAAGCTTTAGGACATGATGA
TCCCTCACACACCTGGCTCACCCCGTCCTCAATCCTCCATTGCCAGGTCA
TGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCTCTCCCTT
GCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAATTCAAGCG
ACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAGGTAAGGA
GGGAGACACACAGTATCCTTTCGATGGGAGGATGAAAAGATGCATACACT
GAAGCAAGAATTTAGATGTATATATATACATTGAAGCAAAAGTATAAACA
TTTGAATATGTCTGAATGTTGCTTCGATAGGTAAATTTTCCTCATTCCAA
TCTATATGATCTTTTTTCCTAACCCGCAGGAGCTCCGACGAGAATACTTA
GAGGAGATCAAGGCGCGAAATGCACACCTCTTCAAGCTCAACAGCCAAGG
AGAGCAGACCAGCACGGCACAACCGTGAGAAAAGAATATGTTAATAGAAT
AGAAGCAAGCAGGCGCTCCGGTGGGATCAGATTCAATAAAGCCTTTTTGA
AGGAACAGAAATACTTGTGATGACAAGGCCGTTCGTGGGTGCAAATTCAA
AAATTCTCGATCATACAAGGAAAGATAGCTCTTCTTGACGGGCCGTAAGC
AGGCGTACTTGTGCGGAGAGTGTGGCGTCACTTGACGCCGAAGAGTTTGC
AAGATGGACAATGCAGGGGGGATTGTGAAAGCCTCGTGATTGGACAGCCG
AAGTACGCACTATACGAACTTTTCGCATTTAATTGGATACAAATTATTGC
TGTCGTACATTTTCAAATGGCAAGGAAAAAGAGACACATCGTCTATAAAA
TAAAATGCGAAGAAAAATTAATTTCAAGCATCGTTTG
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Coding sequence (CDS) from alignment at CM002467.1:30242..32128-

>rna5900 ID=rna5900|Name=rna5900|organism=Nannochloropsis gaditana|type=CDS|length=2004bp|location=Sequence derived from alignment at CM002467.1:30242..32128- (Nannochloropsis gaditana)
GTCATGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCTCTC
CCTTGCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAATTCA
AGCGACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAGGTA
AGGAGGGAGACACACAGTATCCTTTCGATGGGAGGATGACCGATCCTAGA
AAACAGTCTGGGTGAGATAGTGCAAAAGGAGTACAGCGAATTTATCGAGT
CCTTACCCTATCGGGACCTTGTTCAGGAGAAGATGAGCGTACATTGGAGC
TTCCTTCCGTGGAGAAGACGGCCTTTGAGTACGTCATGCGATTTTTGAGA
GTGCACGCGGCAACCCCCCTGCAGGATATCCCCAAGATGAATGTCCGCAT
CGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTTTGC
TCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGATTGC
GGTCATGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCTCT
CCCTTGCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAATTC
AAGCGACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAGGT
AAGGAGGGAGACACACAGTATCCTTTCGATGGGAGGATGACCGATCCTAG
AAAACAGTCTGGGTGAGATAGTGCAAAAGGAGTACAGCGAATTTATCGAG
TCCTTACCCTATCGGGACCTTGTTCAGGAGAAGATGAGCGTACATTGGAG
CTTCCTTCCGTGGAGAAGACGGCCTTTGAGTACGTCATGCGATTTTTGAG
AGTGCACGCGGCAACCCCCCTGCAGGATATCCCCAAGATGAATGTCCGCA
TCGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTTTG
CTCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGATTG
CGGTCATGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCTC
TCCCTTGCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAATT
CAAGCGACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAGG
TAAGGAGGGAGACACACAGTATCCTTTCGATGGGAGGATGACCGATCCTA
GAAAACAGTCTGGGTGAGATAGTGCAAAAGGAGTACAGCGAATTTATCGA
GTCCTTACCCTATCGGGACCTTGTTCAGGAGAAGATGAGCGTACATTGGA
GCTTCCTTCCGTGGAGAAGACGGCCTTTGAGTACGTCATGCGATTTTTGA
GAGTGCACGCGGCAACCCCCCTGCAGGATATCCCCAAGATGAATGTCCGC
ATCGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTTT
GCTCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGATT
GCGGTCATGGAGCTTGCCCATTTTCTGGTCCTGGATCCCCTCCTTCGCCT
CTCCCTTGCCCGGGTCCACTTTATATTGAAAGCGACGCCTTTGGAGGAAT
TCAAGCGACTTTTCCTCTTTCAAAACGATCTGACTCAGGAGGAGGAGAAG
GTAAGGAGGGAGACACACAGTATCCTTTCGATGGGAGGATGACCGATCCT
AGAAAACAGTCTGGGTGAGATAGTGCAAAAGGAGTACAGCGAATTTATCG
AGTCCTTACCCTATCGGGACCTTGTTCAGGAGAAGATGAGCGTACATTGG
AGCTTCCTTCCGTGGAGAAGACGGCCTTTGAGTACGTCATGCGATTTTTG
AGAGTGCACGCGGCAACCCCCCTGCAGGATATCCCCAAGATGAATGTCCG
CATCGTTTTAAAGAATGGGCAGGAGCTTGATGCACCCGTTGAGGCGGCTT
TGCTCCTTCCGTCGACCCTCCTAGCCGGTATGCTGGAAGCGGAGGAAGAT
TGCG
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Synonyms
Publications