EWM24786.1, cds5885 (CDS) Nannochloropsis gaditana

Overview
NameEWM24786.1
Unique Namecds5885
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:31928..32042 -
Alignment locationCM002467.1:31597..31706 -
Alignment locationCM002467.1:31274..31360 -
Alignment locationCM002467.1:30894..31082 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24786.1
Productglycoprotein fp21
Orig transcript idgnl|cribi|Naga_100725g3.710.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:31928..32042 -
CM002467.1supercontigCM002467.1:31597..31706 -
CM002467.1supercontigCM002467.1:31274..31360 -
CM002467.1supercontigCM002467.1:30894..31082 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016072Skp1_comp_dimer
Homology
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|585106372|gb|EWM24786.1| (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 332.413 bits (851), Expect = 3.374e-115
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MNVRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETHSILSMGG 166
            MNVRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETHSILSMGG
Sbjct:    1 MNVRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETHSILSMGG 166          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|401396390|ref|XP_003879810.1| (protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool] >gi|325114218|emb|CBZ49775.1| protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool] >gi|820688612|tpe|CEL64363.1| TPA: Protein F46A9.4, confirmed by transcript evidence, related [Neospora caninum Liverpool])

HSP 1 Score: 86.2705 bits (212), Expect = 2.837e-18
Identity = 54/158 (34.18%), Postives = 90/158 (56.96%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFI-ESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            V +V + G E D  +E A +  S L+  M+E + DC E   ++ LP+VE    + ++ +   H   P ++IPKP+  ++L E+V +   +FI E+   + L  ++  A++L + PLL LS+A+V  ++KA   EE +R+F   ND T EEE   RE +
Sbjct:   12 VTLVSQEGDEFDVDIEVASM--SALIKTMVEEDSDCQE---SIPLPNVETCILKKIIEYCEHHYNNPPEEIPKPLKSSNLAEVVSEWDFQFINENSDQKILFALILAANYLNIKPLLDLSVAKVATMIKAKTPEEIRRIFNIVNDFTPEEEAQVREEN 164          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|237840549|ref|XP_002369572.1| (suppressor of kinetochore protein 1, putative [Toxoplasma gondii ME49] >gi|675130068|ref|XP_008886921.1| suppressor of kinetochore protein 1, putative [Hammondia hammondi] >gi|95007279|emb|CAJ20499.1| skp1 family protein, putative [Toxoplasma gondii RH] >gi|523571081|gb|EPR57985.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii GT1] >gi|527315830|gb|EPT32444.1| suppressor of kinetochore protein 1, putative [Toxoplasma gondii ME49] >gi|557733223|gb|ESS29388.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii VEG] >gi|661334368|gb|KEP62514.1| suppressor of kinetochore protein 1, putative [Hammondia hammondi] >gi|672254799|gb|KFG30630.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii p89] >gi|672260561|gb|KFG35139.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672278022|gb|KFG49136.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii FOU] >gi|672296112|gb|KFG60660.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii RUB] >gi|672565428|gb|KFH05742.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii VAND] >gi|672577818|gb|KFH15625.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii MAS] >gi|820695893|tpe|CEL71630.1| TPA: S-phase kinase-associated protein, putative [Toxoplasma gondii VEG] >gi|1005152465|gb|KYF41405.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii ARI] >gi|1008951229|gb|KYK68439.1| putative suppressor of kinetochore protein 1 [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 85.8853 bits (211), Expect = 4.690e-18
Identity = 53/158 (33.54%), Postives = 90/158 (56.96%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFI-ESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            V +V + G E D  +E A +  S L+  M+E + DC E   ++ LP+V+    + ++ +   H   P ++IPKP+  ++L E+V +   +FI E+   + L  ++  A++L + PLL LS+A+V  ++KA   EE +R+F   ND T EEE   RE +
Sbjct:   12 VTLVSQEGDEFDVDIEVASM--SALIKTMVEEDSDCQE---SIPLPNVDTCILKKIIEYCEHHHNNPPEEIPKPLKSSNLAEVVSEWDYQFINENSDQKILFALILAANYLNIKPLLDLSVAKVATMIKAKTPEEIRRIFNIVNDFTPEEEAQVREEN 164          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|673024782|ref|XP_008866352.1| (hypothetical protein H310_04016 [Aphanomyces invadans] >gi|574477918|gb|ETW04914.1| hypothetical protein H310_04016 [Aphanomyces invadans])

HSP 1 Score: 80.1073 bits (196), Expect = 5.236e-16
Identity = 53/163 (32.52%), Postives = 89/163 (54.60%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETHSILSMG 165
            VR++   G+  + P+E A +  S L+    E  ED  EDE+   LP+V+ +    V+ F++ H   P++DIPKPI+  S  E+V+K   EFI   PY  + +++  A++L + PLL L+ A+V  I+     ++ + +F  +   T EEEK  R+ +     G
Sbjct:    7 VRLLSSEGESFEVPLEVAKI--SKLIK---EQVEDGVEDEQEFPLPNVKTSVLVKVVEFIKYHHVNPMKDIPKPIV-TSFEEVVEKWDLEFINQ-PYEMIFELILAANYLDIKPLLELACAKVSGIIFGKTPDQIREIFGIEQPFTPEEEKFIRDENKWPESG 162          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|209879962|ref|XP_002141421.1| (suppressor of kinetochore protein 1 [Cryptosporidium muris RN66] >gi|209557027|gb|EEA07072.1| suppressor of kinetochore protein 1, putative [Cryptosporidium muris RN66] >gi|1098427577|gb|OII75634.1| suppressor of kinetochore protein 1 [Cryptosporidium andersoni])

HSP 1 Score: 79.7221 bits (195), Expect = 7.432e-16
Identity = 52/157 (33.12%), Postives = 84/157 (53.50%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            V++V   G+E +  V+  +   STL+  M+E   D G  E  + LP+V       V+ + + H   P ++IPKP+  NSL  IV     EF+ ++    L ++M  A+++ + PLL L  A+V  ++K    EE +++F  QND T EEE   RE +
Sbjct:    6 VKLVSSEGEEFE--VDICVATASTLIRNMIE---DVG-SEDPIPLPNVRSDVLRKVIEYCKHHVNNPAKEIPKPLRSNSLTHIVSPWDEEFV-NIEQELLFELMLTANYMDIKPLLDLVCAKVATMIKGKKAEEIRQIFNIQNDFTPEEEAAVREEN 155          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|126653263|ref|XP_001388386.1| (Skp1 family protein [Cryptosporidium parvum Iowa II] >gi|126117479|gb|EAZ51579.1| Skp1 family protein, putative [Cryptosporidium parvum Iowa II])

HSP 1 Score: 79.7221 bits (195), Expect = 9.313e-16
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            VR++   G+E    V  A    STL+  ++EA  D G D+  + LP+V       V+ +   H   P ++IPKP+  NSL  IV +   EF+ ++    L ++M  A++L + PLL LS A+V  ++K    EE +++F  +ND T EEE   RE +
Sbjct:    6 VRLLSSEGEEFAVDVRVATA--STLVRNIIEA--DVGIDD-PVPLPNVRGDVLRKVLDYCEYHVDNPSKEIPKPLRSNSLSNIVCEWDEEFV-NIQQEFLFELMLAANYLDIKPLLDLSCAKVATMIKGKKAEEIRQIFNIENDFTPEEESAIREEN 156          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|1098426004|gb|OII74124.1| (hypothetical protein cubi_02926 [Cryptosporidium ubiquitum])

HSP 1 Score: 79.337 bits (194), Expect = 1.294e-15
Identity = 53/157 (33.76%), Postives = 86/157 (54.78%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            VR+V   G+E    V+  ++  STL+  ++E   D G D+  + LP+V       V+ +   H   P ++IPKP+  NSL  IV +   EF+ ++    L ++M  A++L + PLL LS A+V  ++K    EE +++F  +ND T EEE   RE +
Sbjct:    6 VRLVSSEGEEF--AVDVRVVTASTLVRNIIE---DVGIDD-PVPLPNVRGDVLRKVLDYCEYHVDNPSREIPKPLRSNSLSNIVCEWDEEFV-NIQQEFLFELMLAANYLDIKPLLDLSCAKVATMIKGKKAEEIRQIFNIENDFTPEEESAIREEN 155          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|961502951|emb|CUV07236.1| (unnamed protein product [Cryptosporidium hominis] >gi|1129249865|gb|OLQ17922.1| Skp1 family protein [Cryptosporidium hominis])

HSP 1 Score: 77.411 bits (189), Expect = 6.395e-15
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            VR++   G+E    V  A    STL+  ++E   D G D+  + LP+V       V+ +   H   P ++IPKP+  NSL  IV +   EF+ ++    L ++M  A++L + PLL LS A+V  ++K    EE +++F  +ND T EEE   RE +
Sbjct:    6 VRLLSSEGEEFAVDVRVATA--STLVRNIIE---DVGIDD-PVPLPNVRGDVLRKVLDYCEYHVDNPSKEIPKPLRSNSLSNIVCEWDEEFV-NIQQEFLFELMLAANYLDIKPLLDLSCAKVATMIKGKKAEEIRQIFNIENDFTPEEESAIREEN 155          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|1210519297|dbj|GAX21881.1| (S-phase kinase-associated protein 1 [Fistulifera solaris] >gi|1210527503|dbj|GAX13788.1| S-phase kinase-associated protein 1 [Fistulifera solaris])

HSP 1 Score: 73.559 bits (179), Expect = 2.226e-13
Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERT---LELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            V ++ K+G     PV   +   S L+  M++  ED  EDE +   + LP+V+    + V+ F + H A P+ +I KP+    + ++VQK Y++F+E L    L +++  A+++ + PLL L+ A V  ++K    E+ +  F   ND + EEE   RE +
Sbjct:    8 VNLISKDGDSF--PVSIGVAKMSELVRSMMD--EDENEDENSSMEIPLPNVKSEVLQKVIEFCQHHLAEPMNEIEKPLKSQKMSDVVQKWYADFVE-LEQVLLFELILAANYMDIKPLLDLTCATVASMIKGKSPEDIRATFNITNDFSPEEEAQVREEN 162          
BLAST of EWM24786.1 vs. NCBI_GenBank
Match: gi|219109658|ref|XP_002176583.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411118|gb|EEC51046.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.1738 bits (178), Expect = 2.899e-13
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 0
Query:    3 VRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVM--EL---AHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
            V ++ K+G     P+  A +  S L+ GM++ + +   D+  + LP+V+      V+ F   H   P+ +I KP+    + ++VQK Y++F+      D+ QV+  EL   A+++ + PLL L+ A V  ++K    E+ ++ F  QND + EEE   RE +
Sbjct:   10 VNLISKDGDSFSVPLAVAKM--SELVKGMIDEDAEDEGDKIEIPLPNVKSQVLNKVIEFCEHHLQEPMTEIEKPLKSQVMADVVQKWYADFV------DVEQVLLFELILAANYMDIKPLLDLTCATVAGMIKGKTPEDIRQTFGIQNDFSPEEEAQVREEN 163          
The following BLAST results are available for this feature:
BLAST of EWM24786.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106372|gb|EWM24786.1|3.374e-115100.00glycoprotein fp21 [Nannochloropsis gaditana][more]
gi|401396390|ref|XP_003879810.1|2.837e-1834.18protein F46A9.4, confirmed by transcript evidence,... [more]
gi|237840549|ref|XP_002369572.1|4.690e-1833.54suppressor of kinetochore protein 1, putative [Tox... [more]
gi|673024782|ref|XP_008866352.1|5.236e-1632.52hypothetical protein H310_04016 [Aphanomyces invad... [more]
gi|209879962|ref|XP_002141421.1|7.432e-1633.12suppressor of kinetochore protein 1 [Cryptosporidi... [more]
gi|126653263|ref|XP_001388386.1|9.313e-1634.39Skp1 family protein [Cryptosporidium parvum Iowa I... [more]
gi|1098426004|gb|OII74124.1|1.294e-1533.76hypothetical protein cubi_02926 [Cryptosporidium u... [more]
gi|961502951|emb|CUV07236.1|6.395e-1533.76unnamed protein product [Cryptosporidium hominis] ... [more]
gi|1210519297|dbj|GAX21881.1|2.226e-1330.63S-phase kinase-associated protein 1 [Fistulifera s... [more]
gi|219109658|ref|XP_002176583.1|2.899e-1329.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5900rna5900Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications