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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100648g1.6431.mrna |
| Orig protein id | gnl|cribi|Naga_100648g1.6431 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:19486..21827 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5896 ID=rna5896|Name=rna5896|organism=Nannochloropsis gaditana|type=mRNA|length=419bp
ATGGGTCTTCTCCAGAACTGGAGCGTGCTCTCGGCCCACCTGGTGGAGGC
GGAGGGCGGGACCGAGGACTGGGGGCTCCCGGGCGTCTTGGCCTCCCGGA
TTTCCTCAGGATACTTCGCCCGCTACCGGCAGAGCACGGACGCTTTCCTC
TCCCTCGTCTCCCCCACCTCCTCCACCCAGCTCCAGCATCCTCCCGACGC
TCCTTGCCCAGCAGGAAACGATGCATGCGCAGGACCCGAATAAGCAGGGC
GATGCCAAGACGAGGTCCCCGAGGCCCACACGGCGGGACCAACGCGCTCA
GCGACAACAGCAGCAGCGAGGGCAGGGAGAGGTCGGGGGGGAGGGCGGTC
GCCAATGGTTCTCCCTCCCGCCTTCAAGACGGGGCCAAGGGGAGGGAAGA
GCAGGGAGGGAGGAGGGGA back to topprotein sequence of rna5896 >rna5896-protein ID=rna5896-protein|Name=rna5896|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MAVSRTATPLFLIFLVVVFSCSYCIHAFHLPLRHNYPNIGHEKRKAWFSS
VDFQKIGEQDRWRATRTSSASSSQEQEEGKKAMAPDEEIMEALIATEWAD
LEAFSNQHYKYLIHPQFYMKLADRIYELPTQEEQDEAAAKATKIWNRLLK
ILESAETMRTTTAEKLEKMVAQAAEDDGAFLFPLAPDRVEVKPPFRPPSL
PPSLPPFLAPIQFPSLLYFVPLSPLCHAFFFDARSILSNVRRHVSPGVRC back to topmRNA from alignment at CM002467.1:19486..21827+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5896 ID=rna5896|Name=rna5896|organism=Nannochloropsis gaditana|type=mRNA|length=2342bp|location=Sequence derived from alignment at CM002467.1:19486..21827+ (Nannochloropsis gaditana)
TTCTAGCCACCACTTACTCGAAATTACCCCACGACCCGCGCGTTTTTTGT
TGTTGCATACATTTTGATACAGGTGTAACGCATTTTTCAGGGGCAAGCTA
TGGCGGTAAGCCGTACAGCGACGCCTTTattcctcatcttcctggTCGTA
gtcttctcctgctcttACTGCATCCACGCTTTTCATCTTCCCTTGAGACA
CAACTATCCGAATATTGGTcatgaaaaaagaaaagcttgGTTTTCATCAG
TCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCGAGGTACGTAAACT
TTGTCACTGCCAGTACTCAATCCTGATAGTCGCAGTTGCCCTGGCCCCGT
CGTATTTATTTCTATCCTGGATGACAAGATGACATGAACGTTTGTGCCTC
CTGTACAAACATTTGCAGTCTGTTCATGCATCAATTGAGTATTTCGCGCA
TGAAAGTGGTAATTTGAGACCCAAGCGAGTCATGCCTGCCCGCGGGTGCA
AGCAGAGCAAGGGGGCTCTAGAACCAGGCTCGCGCGGCCAGCCAGCATCG
CAAATGGGATCCGGACGCCCTTcacccctcccgtcctcttatctcacccc
cccccttcagcCACCCgtacctcctccgcctcctcctctcaggagcagga
ggaggggaagaaggccatggccccggacgaggagatcATGGAGGCCTTGA
TTGCGACGGAATGGGCCGACTTGGAAGCCTTCTCCAACCAGCACTACAAA
TACCTCATCCATCCCCAGTTCTACATGAAGCTCGgtgaggggcaggggga
gggaggggacgcgcGCGGGAAAGTTGGTCGTGGagatgggccggggggcT
AGGCGGGCCTGCGAGCCTGcgctcacctccctccccccctccctccccct
ctccctcgccacctctcatcccccctccctcccttcctccctcccatttg
CCAGCCGATCGGATCTACGAGCTGCCCACtcaggaggagcaggacgagGC
TGCCGCGAAGGCCACCAAGATATGGAACCGGCTTCTGAAGGTAGGGCTAG
GAGTCGCTTGAGGGTCCCATGAATCCTTCCTTCGGGGCATACCGTGATGG
GGCGGGTACGCGTGTATGCATGCATGTACGCCTGGggcccctctctttcc
cactGAGCCCTCtgagccctccccctgccttccccccgcccgagcAGATC
CTCGAGTCAGCGGAGACGATGCGGACCACCACGGCGGAGAAGCTGGAGAa
ggtgcggggggaggacggggcaagtgggaaggagagagtaggaggggggg
cggtgcagaaggaggtgtgggaggcgggggggtaGGGGTTGATTTtggtg
aggagaaggacaaggaagcgagcaggaggagggccgaaGCCCGTTGTCAG
GGCACAACAGCGTCGCCAAAcccttgccttcttttcctctcctctcacGG
CGGAGCAGATGGTCGCGCAGGCTGCTGAGGACGACGgagccttcctcttt
cccctcgcccccgacAGGGTGGAGGTAAagcctcctttccgtcctccctc
cctccctccctccctccctccattcctcgctcccattcagttcccatccc
tcctttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCTTCTTTGAT
GCTCGCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCCGGCGTCCG
ATGTTgaccattccctccctccctccctccctccctccctccctcccttt
ctccctccctccctttctccctccctcccttcctctttccattcctcctg
tCAAAGGCTGTCAGGGCCGAGGTCTTGAAGAACTTGGAGTGCATGGACGA
GGGCGCTTTGAGCACTCTTAACAGCTGGATGCTCAAGGTCCAGGACGACC
AAGGTGCCCGtccgcactccctccctccctctctctttccctccctcttt
ccctcactccctccctattttcctctcccctccttgcttatctttccctt
cttgtgCGTAGGGTGAGGATTCTCCTCACGTTTCTCAAAcgttctctccc
ttcctcctcccctccttacattcctccctcccttccgtcactgcctccct
cctccccttcctccctccctgcccgcagACAATGCGGCCATGACCGAGGT
CCTGCAGAAGATCTTCCAGTTCTACGCCGGGGGCGTACTGATGCGGGCCA
AGGGCTACGAGCGAGGTGGCTCAGACGGTGAGGGGGACAGAGGGCGCAGG
AGACGCTCTCCCGGCTGGCCACGGTCTCGATCGGGGCTTCTCGCCGCCTT
TTACTCACCCGATATCTCTGCTTCCCTTGTTCTCGGttcgcc back to topCoding sequence (CDS) from alignment at CM002467.1:19486..21827+ >rna5896 ID=rna5896|Name=rna5896|organism=Nannochloropsis gaditana|type=CDS|length=3765bp|location=Sequence derived from alignment at CM002467.1:19486..21827+ (Nannochloropsis gaditana)
ATGGCGGTAAGCCGTACAGCGACGCCTTTattcctcatcttcctggTCGT
AgtcttctcctgctcttACTGCATCCACGCTTTTCATCTTCCCTTGAGAC
ACAACTATCCGAATATTGGTcatgaaaaaagaaaagcttgGTTTTCATCA
GTCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCGAGcCACCCgtac
ctcctccgcctcctcctctcaggagcaggaggaggggaagaaggccatgg
ccccggacgaggagatcATGGAGGCCTTGATTGCGACGGAATGGGCCGAC
TTGGAAGCCTTCTCCAACCAGCACTACAAATACCTCATCCATCCCCAGTT
CTACATGAAGCTCGCCGATCGGATCTACGAGCTGCCCACtcaggaggagc
aggacgagGCTGCCGCGAAGGCCACCAAGATATGGAACCGGCTTCTGAAG
ATCCTCGAGTCAGCGGAGACGATGCGGACCACCACGGCGGAGAAGCTGGA
GAagATGGTCGCGCAGGCTGCTGAGGACGACGgagccttcctctttcccc
tcgcccccgacAGGGTGGAGGTAAagcctcctttccgtcctccctccctc
cctccctccctccctccattcctcgctcccattcagttcccatccctcct
ttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCTTCTTTGATGCTC
GCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCCGGCGTCCGATGT
TgaATGGCGGTAAGCCGTACAGCGACGCCTTTattcctcatcttcctggT
CGTAgtcttctcctgctcttACTGCATCCACGCTTTTCATCTTCCCTTGA
GACACAACTATCCGAATATTGGTcatgaaaaaagaaaagcttgGTTTTCA
TCAGTCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCGAGcCACCCg
tacctcctccgcctcctcctctcaggagcaggaggaggggaagaaggcca
tggccccggacgaggagatcATGGAGGCCTTGATTGCGACGGAATGGGCC
GACTTGGAAGCCTTCTCCAACCAGCACTACAAATACCTCATCCATCCCCA
GTTCTACATGAAGCTCGCCGATCGGATCTACGAGCTGCCCACtcaggagg
agcaggacgagGCTGCCGCGAAGGCCACCAAGATATGGAACCGGCTTCTG
AAGATCCTCGAGTCAGCGGAGACGATGCGGACCACCACGGCGGAGAAGCT
GGAGAagATGGTCGCGCAGGCTGCTGAGGACGACGgagccttcctctttc
ccctcgcccccgacAGGGTGGAGGTAAagcctcctttccgtcctccctcc
ctccctccctccctccctccattcctcgctcccattcagttcccatccct
cctttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCTTCTTTGATG
CTCGCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCCGGCGTCCGA
TGTTgaATGGCGGTAAGCCGTACAGCGACGCCTTTattcctcatcttcct
ggTCGTAgtcttctcctgctcttACTGCATCCACGCTTTTCATCTTCCCT
TGAGACACAACTATCCGAATATTGGTcatgaaaaaagaaaagcttgGTTT
TCATCAGTCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCGAGcCAC
CCgtacctcctccgcctcctcctctcaggagcaggaggaggggaagaagg
ccatggccccggacgaggagatcATGGAGGCCTTGATTGCGACGGAATGG
GCCGACTTGGAAGCCTTCTCCAACCAGCACTACAAATACCTCATCCATCC
CCAGTTCTACATGAAGCTCGCCGATCGGATCTACGAGCTGCCCACtcagg
aggagcaggacgagGCTGCCGCGAAGGCCACCAAGATATGGAACCGGCTT
CTGAAGATCCTCGAGTCAGCGGAGACGATGCGGACCACCACGGCGGAGAA
GCTGGAGAagATGGTCGCGCAGGCTGCTGAGGACGACGgagccttcctct
ttcccctcgcccccgacAGGGTGGAGGTAAagcctcctttccgtcctccc
tccctccctccctccctccctccattcctcgctcccattcagttcccatc
cctcctttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCTTCTTTG
ATGCTCGCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCCGGCGTC
CGATGTTgaATGGCGGTAAGCCGTACAGCGACGCCTTTattcctcatctt
cctggTCGTAgtcttctcctgctcttACTGCATCCACGCTTTTCATCTTC
CCTTGAGACACAACTATCCGAATATTGGTcatgaaaaaagaaaagcttgG
TTTTCATCAGTCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCGAGc
CACCCgtacctcctccgcctcctcctctcaggagcaggaggaggggaaga
aggccatggccccggacgaggagatcATGGAGGCCTTGATTGCGACGGAA
TGGGCCGACTTGGAAGCCTTCTCCAACCAGCACTACAAATACCTCATCCA
TCCCCAGTTCTACATGAAGCTCGCCGATCGGATCTACGAGCTGCCCACtc
aggaggagcaggacgagGCTGCCGCGAAGGCCACCAAGATATGGAACCGG
CTTCTGAAGATCCTCGAGTCAGCGGAGACGATGCGGACCACCACGGCGGA
GAAGCTGGAGAagATGGTCGCGCAGGCTGCTGAGGACGACGgagccttcc
tctttcccctcgcccccgacAGGGTGGAGGTAAagcctcctttccgtcct
ccctccctccctccctccctccctccattcctcgctcccattcagttccc
atccctcctttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCTTCT
TTGATGCTCGCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCCGGC
GTCCGATGTTgaATGGCGGTAAGCCGTACAGCGACGCCTTTattcctcat
cttcctggTCGTAgtcttctcctgctcttACTGCATCCACGCTTTTCATC
TTCCCTTGAGACACAACTATCCGAATATTGGTcatgaaaaaagaaaagct
tgGTTTTCATCAGTCGATTTCCAGAAAATTGGAGAACAGGACCGCTGGCG
AGcCACCCgtacctcctccgcctcctcctctcaggagcaggaggagggga
agaaggccatggccccggacgaggagatcATGGAGGCCTTGATTGCGACG
GAATGGGCCGACTTGGAAGCCTTCTCCAACCAGCACTACAAATACCTCAT
CCATCCCCAGTTCTACATGAAGCTCGCCGATCGGATCTACGAGCTGCCCA
CtcaggaggagcaggacgagGCTGCCGCGAAGGCCACCAAGATATGGAAC
CGGCTTCTGAAGATCCTCGAGTCAGCGGAGACGATGCGGACCACCACGGC
GGAGAAGCTGGAGAagATGGTCGCGCAGGCTGCTGAGGACGACGgagcct
tcctctttcccctcgcccccgacAGGGTGGAGGTAAagcctcctttccgt
cctccctccctccctccctccctccctccattcctcgctcccattcagtt
cccatccctcctttatTTTGTGCCGCTATCACCTCTGTGTCACGCTTTCT
TCTTTGATGCTCGCTCCATTCTCTCAAATGTCAGGCGCCATGTTTCCCCC
GGCGTCCGATGTTga back to top
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