rna5895, rna5895 (mRNA) Nannochloropsis gaditana

Overview
Namerna5895
Unique Namerna5895
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length522
Alignment locationCM002467.1:16201..17913 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100648g2.6432.mrna
Orig protein idgnl|cribi|Naga_100648g2.6432
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:16201..17913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100648g2gene5690Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5895rna5895-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24793.1cds5880Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5895 ID=rna5895|Name=rna5895|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
CCCGCGCCTCCCGTCCCCCACGCGTCCTCCGAAGACTCTGAAGAGATGGC
AGAGGCCTCGGTGACTAGGCAGCCCCCACCTGGGGCGTGGAGGGCGCCGG
AGAGGGAGGCCGGCTCCAATGTGACTGGGGATGGGCCCCCCGCTTCGGCG
GCCATGGAAGGGGAAGGGGCGTGGGAGGGGTTGGGGGAGGGGCAGGGGGA
AGACGAGGGGAGCCAAAGCAGCAGCTTCGCCTCCGCCCTGTCCTCCACCT
CGCCCTCCATCCCTTCCTCCTCCGCGCCGTCCGCCTTGACAGAGGCCCGC
TCCCCTTCGCTTTCCATCTCTTCCTGCTCTTCCGCCTCCTGCAGCGGCTC
TTCTTCCTCCTGCTCCCCCTCCTTCTCAGAGACAGAGGGGGAGGACGGGA
GGGAGGGCGGGCATAGCAATCCCCAAAGCCCAGCCAAACAGCGTCGGGAA
CCGTATGGGCCGACGCTCCGGCGCACCGGCTTGGGCGGGAAGCTGCTGTG
AGGAGGAAGGAGGGAGGGAGGG
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protein sequence of rna5895

>rna5895-protein ID=rna5895-protein|Name=rna5895|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MGLLQNWSVLSAHLVEAEGGTEDWGLPGVLASRISSGYFARYRQSTDAFL
SLVSPTSSTQLQHPPDAPCPAGNDACAGPE
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mRNA from alignment at CM002467.1:16201..17913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5895 ID=rna5895|Name=rna5895|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp|location=Sequence derived from alignment at CM002467.1:16201..17913- (Nannochloropsis gaditana)
ATGGGTCTTCTCCAGAACTGGAGCGTGCTCTCGGCCCACCTGGTGGAGGC
GGAGGGCGGGACCGAGGACTGGGGGCTCCCGGGCGTCTTGGCCTCCCGGA
TTTCCTCAGGGTAAGGACGGCCTTTCCTCCCTCCCCCCCTCCCTACCTAC
CTACCTCCCCACCTCCCTCCTTACACCTTGTCTTTTCCGGCTGCGGTCTC
TTTATGTCGCCAACTCTTTTGGCTTCCCGTCCCCTAAGCCTCTCAGCCCT
CCCTCCCTCCCTTCCTCCCTCCCCTCCTCCCTCCCTTCCTCCCTCCCTCC
CTCCCTTCCTCCCTCCTTTTTCGACAGATACTTCGCCCGCTACCGGCAGA
GCACGGACGCTTTCCTCTCCCTCGTCTCCCCCACCTCCTCCACCCAGCTC
CAGCATCCTCCCGACGCTCCTTGCCCAGCAGGAAACGGTGCGGAAGCCCT
CCTTCCTTTCCTACCTCACCCCTCCCTCTTTCCCCCCCTCCCCCCCTTCC
TTGATGCCCCCCCTCACCAGTCATTATTCTGTCCTCTCCCCTTGCACGAT
CCTTCTCTCCTCTCTCCTCCTCTCCCTCCCTCTTGCCCGCCCCCGCCCCG
GCTCTCGTCCTCCTCGCTCAGACCACGGCCCCCCCGGAGCTCCTCCTTCC
CTCCAGGACACCTCCCCCTCCCCCTCCTTCTCCTCCTCCTCCTCCCTCCC
TTCCTCCTCCTCCTCCCTCCGCCGCCTCCTCCCTCGCACCGTCCACGTCC
TCCTCCTCCACCCCCTCCAGTGCCTTGCCCTCGCCAAGATCACCTCCCCT
CCCTCCTCCCCGTCCTCCCCCCCCACCTACCCCCAGCTGGTCTCCCTCCT
CGGCATTCGCGGCCTCTACGCAGGAATTGGCACCTCCCTCCTCTCCTCCT
TCCTCCCCTCCGCCCTCACCTGCTTCCCACTCTCTCTCCTCCTTCGCAGC
CGGCAGATGCTCCAGGGTCTGGCCAGGGCTCAGGAGGGAGGGAGGGAAGG
AGGGAGGGAGGGAGGGGCCGGGAGAGGCGTGTTGGCGGTGATGCGGGGGC
TCGTCCAGAAGGGTGGGCTTGAGGAGGTGAGCGCCTTGAGGACTGAGGGA
GGGAGGGAGGGAGGGAGGGAGGTAGGGCGGCAAGGAAAGGGGCAAGATGG
TCTACTCCCCACTGTTTATACCACCCTCTTACCCTCCCTCCCTCCATCCC
TTCCCCCCTCCCTCCAGGTCAAGAGCGGCCTGAGCGCGCTCGTGTGGGGG
CCGCCCCCGCCTTCCTCTCCCTCCTTCTCGCGCGCGTCCTGATCGACCTG
AGCGTGGGGGAGGGAGACCGTCGGGACCGGCGTTGGCGGCGGAGGAAGGA
GCGGATCCGGCGGGTGATGCGGCAGGTGGGGGGAGGAGGGGGGGACGGGG
GAGGGGGAGGGGGGGGCGGGAACATTTATGACCGGCCGACCCTCATTCGT
GTCGGTCCGTGTCGGGATTTTCGTCTTCCTTCTTCTCCTTTATCGCCCCC
TTGCACTCCCGTAGATGCATGCGCAGGACCCGAATAAGCAGGGCGATGCC
AAGACGAGGTCCCCGAGGCCCACACGGCGGGACCAACGCGCTCAGCGACA
ACAGCAGCAGCGAGGGCAGGGAGAGGTCGGGGGGGAGGGCGGTCGCCAAT
GGTTCTCCCTCCCGCCTTCAAGACGGGGCCAAGGGGAGGGAAGAGCAGGG
AGGGAGGAGGGGA
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Coding sequence (CDS) from alignment at CM002467.1:16201..17913-

>rna5895 ID=rna5895|Name=rna5895|organism=Nannochloropsis gaditana|type=CDS|length=729bp|location=Sequence derived from alignment at CM002467.1:16201..17913- (Nannochloropsis gaditana)
ATGCATGCGCAGGACCCGAATAAATACTTCGCCCGCTACCGGCAGAGCAC
GGACGCTTTCCTCTCCCTCGTCTCCCCCACCTCCTCCACCCAGCTCCAGC
ATCCTCCCGACGCTCCTTGCCCAGCAGGAAACGATGGGTCTTCTCCAGAA
CTGGAGCGTGCTCTCGGCCCACCTGGTGGAGGCGGAGGGCGGGACCGAGG
ACTGGGGGCTCCCGGGCGTCTTGGCCTCCCGGATTTCCTCAGGATGCATG
CGCAGGACCCGAATAAATACTTCGCCCGCTACCGGCAGAGCACGGACGCT
TTCCTCTCCCTCGTCTCCCCCACCTCCTCCACCCAGCTCCAGCATCCTCC
CGACGCTCCTTGCCCAGCAGGAAACGATGGGTCTTCTCCAGAACTGGAGC
GTGCTCTCGGCCCACCTGGTGGAGGCGGAGGGCGGGACCGAGGACTGGGG
GCTCCCGGGCGTCTTGGCCTCCCGGATTTCCTCAGGATGCATGCGCAGGA
CCCGAATAAATACTTCGCCCGCTACCGGCAGAGCACGGACGCTTTCCTCT
CCCTCGTCTCCCCCACCTCCTCCACCCAGCTCCAGCATCCTCCCGACGCT
CCTTGCCCAGCAGGAAACGATGGGTCTTCTCCAGAACTGGAGCGTGCTCT
CGGCCCACCTGGTGGAGGCGGAGGGCGGGACCGAGGACTGGGGGCTCCCG
GGCGTCTTGGCCTCCCGGATTTCCTCAGG
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Synonyms
Publications