rna587, rna587 (mRNA) Nannochloropsis gaditana

Overview
Namerna587
Unique Namerna587
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1570
Alignment locationCM002455.1:1469610..1470743 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102099g1.2273.mrna
Orig protein idgnl|cribi|Naga_102099g1.2273
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1469610..1470743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102099g1gene565Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna587rna587-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30086.1cds587Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna587 ID=rna587|Name=rna587|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp
AGTTCAATTGGAGAGCAACATGAGTGTAGCAAGCACAAGTGGAATGACTT
CTCTTTGATTACGTTTATTCTACACTTGGGCTTAGCAATTCACGACATGC
TGGAGGCGCTGAATGCGGAAACGGGCTGGGACGTGCCCATTCACGTGGAT
GCGGCGAGCGGAGGTTTCATAGCCCCTTTCATTCAACCGGAGCTGGTGTG
GGACTTCCGGCTTCCGCTTGTCAAGAGTATTAACGCGTCAGGGCATAAAT
TTGGCCTTGTCTACGCTGGTGTCGGCTGGCTGTGCTTCCGGGAGAAGCAG
GACCTGCAGAATGAGCTCACCTTCACCGTCGACTACCTGGGCGGGTCGCA
ATCGTCCTGCACGCTCAATTTCTCGCGTGGAGCTTCCCAGCTGGTGGGAC
AGTACTACAACTTCCTCCGCTTGGGGCGAGAGGGCTACCGGGAGGTGATG
GCGAATGCCATGGAGAACGCCCGTTACCTGCGCAAGATGCTGCTGGCCAC
GGGCAAGATCGACATTGTCGATACGCAGGACATGCCCTTGGTGGCGTTCA
AGCTTAAACCGGACTTGGGAATCCTCTACACGGTCTTTGAGATCCAGGAT
AAGCTTCGGGAGCGCGGGTGGATCGTGCCTGCTTATCGGTGCCCAAAGGG
TGCAGAGAAACTCTGCATCATGCGTGTGGTCGTGAAAGAGAATTTCTCCC
GGGATCTGGCTGAGCTCCTGGTCGAGGACTTCATGAAGGCTATGGACTAC
TTGGACAAGGACCACAGGGAGCAGCAGGAACTCATTCTCAAAGCGCAAAA
AATGGCGGAGGCGAAGGCGGTGATGATGTCGCACATCGATGGGGTGCTGA
AAGAGCGGGCGCAGAGGGCGCACCACATTGCTCATGACGACACCCACCGT
AAGGCTGAAAAGGGAACGAAAGGCATTTGTTGAGAGGACAAGATGTGTTG
GAGACGAGGGGCTCTGGCTGAGAGGGAGGAAGGGCGGCTTTGTCACGTGC
GTGCCGGGTAACGAAATGCACTTCCTGTGAAGGAGGAAGAGGGAGGGTTC
GCGAACAAATGTTGGGGTAATGATATAATGAAATTGGGGGATCTGGGCCA
CCTGTCACGGGTGGATGACGAGGACCAAGGGCTGGAAAGAGCCGCAATGT
TGGCGAAAGAAGGTGGGCGTAGATGGTGTACGACCATGTGGGAGGGGTAC
CTTCCTAGTACGCTGCATCTGAAATCCGTGGGGAGGGTGCCCATGACGAG
AGGCAACCTGAGCGCACGAAGAAATAAATGGATTGGAAAGGTCCATGGAG
AGGTTCCTTGAACCTTTCTGTGGTAGAGATGGCGGGTATTTTGGAGGCCT
GAGCCGATGGGCAGGGTTACACGTTGGAACGCTGGTGTGGTTGAGAATCG
GGTAGGAATTCTGACGTCGCGTCGCATACCATCTAAGAAGAGAAGATCCA
TTCACAAATTATGCTTTCTTGCTTCTTTTCCCCGTCATGTGCGTTTTAAT
CATAAACCTGACGCCCTGCAAGTGTCGACTGTGCATCGAAGATACCATCC
CTGTACTCACACCAAGTTCG
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protein sequence of rna587

>rna587-protein ID=rna587-protein|Name=rna587|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MLQAAQGHALAFAKARGLHLAWRKLRSFVQDRQLARAKGHGPISFCLAVL
GQGGREEGREGGRPVWRKTLLVVLSGMAWVGAWLLLTWRKVQTWGKKAAL
GLRVEKWTDLSQAACHKASSAAAQALAIIRITLCRCLASVQTTWKERLYP
SIMAAWTSFLSGLSPLWAWLASRWEQAR
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mRNA from alignment at CM002455.1:1469610..1470743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna587 ID=rna587|Name=rna587|organism=Nannochloropsis gaditana|type=mRNA|length=1134bp|location=Sequence derived from alignment at CM002455.1:1469610..1470743- (Nannochloropsis gaditana)
AAGGGGGGGACCGAGTGAGGGCAGCGGTTAGGGATAGAAGAGAACGGTCA
GAGCGCTCATCAGGATACGGCTTGTATTATGATCATTCTCATGATCATCA
TTTCCTTTTGAGGACCACTCTTCATTTCTTCCCATTCCTTCCTTATCCCT
CCCCCCCCTGGTCCCAGCTACCGGCCTGGCTCTCCCCCATGCTCCAAGCA
GCACAGGGCCACGCCCTGGCCTTTGCCAAGGCGCGAGGGCTCCACTTGGC
GTGGAGAAAGCTGCGCTCCTTCGTCCAAGACCGACAGGTGGGTTCTACCC
CTGCCTCCATTCCCTCCCTCCTTGCCTCCGTCGCCCCCGCCTACCGCCTA
TTTGACCTTCCTGTCTCCTCCTCTCGTGCGACAGCTGGCCAGAGCGAAAG
GCCACGGGCCCATATCCTTTTGCCTCGCCGTGCTCGGGCAAGGAGGGCGG
GAAGAAGGGCGGGAAGGAGGGCGGCCGGTCTGGAGGAAGACCCTCCTGGT
TGTGCTCTCAGGCATGGCGTGGGTGGGGGCGTGGCTCCTGCTCACTTGGA
GGAAAGTGCAGACCTGGGGGAAGAAGGCAGCGCTCGGTCTCCGGGTGGAG
AAGTGGACAGGTGTGGAAGAGGGAGGGAGAGAGGGAGGGAGGGAAGGAGG
GATAGAGGGAGAGGGTGTGCGTTTATGAAACTCTGTCTGTGGAACCGGAA
GTCGAAGCTCTTCAACCCCCTTCCTCCCTCCCGTCCTCCCTCCAGACCTC
AGCCAGGCCGCCTGCCACAAGGCAAGCTCGGCGGCCGCGCAGGCCTTGGC
GATCATCCGGATCACGCTGTGCCGTTGCTTGGCAAGTGTGCAAACCACGT
GGAAAGGTAGGAAGGAAGGGGAGAGCGGGGCGATAAGGAGTGGCGTCAAG
TTGGAGAGAAGGGGGGAAGGAACCCAAAGTGTGCCGGACACGAGCTGCCG
GCCTTGGGCGTGGCTGGTCCCCCCTTTGCTCTTCCCTGACACGTTCTTCC
CTTTCCCGCGGCGCTCCCTCCCGACCATCGGCGCAGAGAGGCTTTATCCC
TCCATCATGGCCGCATGGACGAGCTTCCTTTCCGGTCTCTCCCCGCTCTG
GGCCTGGTTGGCCTCGCGGTGGGAGCAAGCGAGG
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Coding sequence (CDS) from alignment at CM002455.1:1469610..1470743-

>rna587 ID=rna587|Name=rna587|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002455.1:1469610..1470743- (Nannochloropsis gaditana)
AGAGGCTTTATCCCTCCATCATGGCCGCATGGACGAGCTTCCTTTCCGGT
CTCTCCCCGCTCTGGGCCTGGTTGGCCTCGCGGTGGGAGCAAGCGAGGAC
CTCAGCCAGGCCGCCTGCCACAAGGCAAGCTCGGCGGCCGCGCAGGCCTT
GGCGATCATCCGGATCACGCTGTGCCGTTGCTTGGCAAGTGTGCAAACCA
CGTGGAAAGCTGGCCAGAGCGAAAGGCCACGGGCCCATATCCTTTTGCCT
CGCCGTGCTCGGGCAAGGAGGGCGGGAAGAAGGGCGGGAAGGAGGGCGGC
CGGTCTGGAGGAAGACCCTCCTGGTTGTGCTCTCAGGCATGGCGTGGGTG
GGGGCGTGGCTCCTGCTCACTTGGAGGAAAGTGCAGACCTGGGGGAAGAA
GGCAGCGCTCGGTCTCCGGGTGGAGAAGTGGACAGATGCTCCAAGCAGCA
CAGGGCCACGCCCTGGCCTTTGCCAAGGCGCGAGGGCTCCACTTGGCGTG
GAGAAAGCTGCGCTCCTTCGTCCAAGACCGACAGAGAGGCTTTATCCCTC
CATCATGGCCGCATGGACGAGCTTCCTTTCCGGTCTCTCCCCGCTCTGGG
CCTGGTTGGCCTCGCGGTGGGAGCAAGCGAGGACCTCAGCCAGGCCGCCT
GCCACAAGGCAAGCTCGGCGGCCGCGCAGGCCTTGGCGATCATCCGGATC
ACGCTGTGCCGTTGCTTGGCAAGTGTGCAAACCACGTGGAAAGCTGGCCA
GAGCGAAAGGCCACGGGCCCATATCCTTTTGCCTCGCCGTGCTCGGGCAA
GGAGGGCGGGAAGAAGGGCGGGAAGGAGGGCGGCCGGTCTGGAGGAAGAC
CCTCCTGGTTGTGCTCTCAGGCATGGCGTGGGTGGGGGCGTGGCTCCTGC
TCACTTGGAGGAAAGTGCAGACCTGGGGGAAGAAGGCAGCGCTCGGTCTC
CGGGTGGAGAAGTGGACAGATGCTCCAAGCAGCACAGGGCCACGCCCTGG
CCTTTGCCAAGGCGCGAGGGCTCCACTTGGCGTGGAGAAAGCTGCGCTCC
TTCGTCCAAGACCGACAGAGAGGCTTTATCCCTCCATCATGGCCGCATGG
ACGAGCTTCCTTTCCGGTCTCTCCCCGCTCTGGGCCTGGTTGGCCTCGCG
GTGGGAGCAAGCGAGGACCTCAGCCAGGCCGCCTGCCACAAGGCAAGCTC
GGCGGCCGCGCAGGCCTTGGCGATCATCCGGATCACGCTGTGCCGTTGCT
TGGCAAGTGTGCAAACCACGTGGAAAGCTGGCCAGAGCGAAAGGCCACGG
GCCCATATCCTTTTGCCTCGCCGTGCTCGGGCAAGGAGGGCGGGAAGAAG
GGCGGGAAGGAGGGCGGCCGGTCTGGAGGAAGACCCTCCTGGTTGTGCTC
TCAGGCATGGCGTGGGTGGGGGCGTGGCTCCTGCTCACTTGGAGGAAAGT
GCAGACCTGGGGGAAGAAGGCAGCGCTCGGTCTCCGGGTGGAGAAGTGGA
CAGATGCTCCAAGCAGCACAGGGCCACGCCCTGGCCTTTGCCAAGGCGCG
AGGGCTCCACTTGGCGTGGAGAAAGCTGCGCTCCTTCGTCCAAGACCGAC
AGAGAGGCTTTATCCCTCCATCATGGCCGCATGGACGAGCTTCCTTTCCG
GTCTCTCCCCGCTCTGGGCCTGGTTGGCCTCGCGGTGGGAGCAAGCGAGG
ACCTCAGCCAGGCCGCCTGCCACAAGGCAAGCTCGGCGGCCGCGCAGGCC
TTGGCGATCATCCGGATCACGCTGTGCCGTTGCTTGGCAAGTGTGCAAAC
CACGTGGAAAGCTGGCCAGAGCGAAAGGCCACGGGCCCATATCCTTTTGC
CTCGCCGTGCTCGGGCAAGGAGGGCGGGAAGAAGGGCGGGAAGGAGGGCG
GCCGGTCTGGAGGAAGACCCTCCTGGTTGTGCTCTCAGGCATGGCGTGGG
TGGGGGCGTGGCTCCTGCTCACTTGGAGGAAAGTGCAGACCTGGGGGAAG
AAGGCAGCGCTCGGTCTCCGGGTGGAGAAGTGGACAGATGCTCCAAGCAG
CACAGGGCCACGCCCTGGCCTTTGCCAAGGCGCGAGGGCTCCACTTGGCG
TGGAGAAAGCTGCGCTCCTTCGTCCAAGACCGACAG
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Synonyms
Publications