EWM30086.1, cds587 (CDS) Nannochloropsis gaditana

Overview
NameEWM30086.1
Unique Namecds587
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1470457..1470555 -
Alignment locationCM002455.1:1470134..1470359 -
Alignment locationCM002455.1:1469888..1469998 -
Alignment locationCM002455.1:1469610..1469707 -

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Properties
Property NameValue
Start range1469610
Start range.
Protein idEWM30086.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102099g1.2273.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1470457..1470555 -
CM002455.1supercontigCM002455.1:1470134..1470359 -
CM002455.1supercontigCM002455.1:1469888..1469998 -
CM002455.1supercontigCM002455.1:1469610..1469707 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM30086.1 vs. NCBI_GenBank
Match: gi|585112723|gb|EWM30086.1| (hypothetical protein Naga_102099g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 347.821 bits (891), Expect = 6.452e-121
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 
Query:    1 MLQAAQGHALAFAKARGLHLAWRKLRSFVQDRQLARAKGHGPISFCLAVLGQGGREEGREGGRPVWRKTLLVVLSGMAWVGAWLLLTWRKVQTWGKKAALGLRVEKWTDLSQAACHKASSAAAQALAIIRITLCRCLASVQTTWKERLYPSIMAAWTSFLSGLSPLWAWLASRWEQAR 178
            MLQAAQGHALAFAKARGLHLAWRKLRSFVQDRQLARAKGHGPISFCLAVLGQGGREEGREGGRPVWRKTLLVVLSGMAWVGAWLLLTWRKVQTWGKKAALGLRVEKWTDLSQAACHKASSAAAQALAIIRITLCRCLASVQTTWKERLYPSIMAAWTSFLSGLSPLWAWLASRWEQAR
Sbjct:    1 MLQAAQGHALAFAKARGLHLAWRKLRSFVQDRQLARAKGHGPISFCLAVLGQGGREEGREGGRPVWRKTLLVVLSGMAWVGAWLLLTWRKVQTWGKKAALGLRVEKWTDLSQAACHKASSAAAQALAIIRITLCRCLASVQTTWKERLYPSIMAAWTSFLSGLSPLWAWLASRWEQAR 178
The following BLAST results are available for this feature:
BLAST of EWM30086.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112723|gb|EWM30086.1|6.452e-121100.00hypothetical protein Naga_102099g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna587rna587Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications