rna5868, rna5868 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5868
Unique Name	rna5868
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3203
Alignment location	CM002466.1:1024270..1024576 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100294g2.4561.mrna
Orig protein id	gnl\|cribi\|Naga_100294g2.4561
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:1024270..1024576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100294g2	gene5663	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5868	rna5868-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24821.1	cds5853	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:1024270..1024576-
coding sequence from alignment at CM002466.1:1024270..1024576-

mRNA sequence

>rna5868 ID=rna5868|Name=rna5868|organism=Nannochloropsis gaditana|type=mRNA|length=3203bp
ATATTGGTCGGTTGGCATGGGAACGTATTCACAATTAAGTAAAATGACGA
ATTGTCGAATGAGAAGTGCCCACGCTGAGAGCAAACAAAAAGAAGTGTGC
GGGAGGCAGGGAACAGACAAATAAAACACCTGGGAGGGCACTTGGAGAGA
GGGAGCTTGGCCTAGGCGAGAGAAGGCGAAGAACGCGTTTGGTCTAAAGG
CTTCCACCTTGGCGTGAGAATTTTCGATATCAGGAAATTTGTTTCCTCAT
TGCCCGTGCATATTAAGTTTCAACGTTAAATTCATGCCCACAACTTCTGA
AGTAGCGTGCGCGCCTTTCTTTTGGTAGAGTTTTCCCCACCGTGCTCGCC
CGTCCATCCAACAGGCTTTTGAGACAGCTGTGGAGAGCTATGGCGGCAGA
CAACCACATTCACGAGGATGAGAGTAATGATGCAGTTACGCCATTTGGTG
CTCCTTCTTCATCTGTCCCTTCTAGTCTCCTGGACTTGCCGCTCCATCAC
ATGCTACGCACGCTTCAGCTCCAGCATGGCCTGCGTCATGGAGACTATCA
ACGCTACCGACATTACCTAAATCGCCGCCTTGCTCGTCTTCGGAAGGGGG
TCAACGCAACTCACAGGGGTGGCAAGGCTTTTGAATCCAAGAATGTTCAC
AGCTTGGCCTATTTGGAAGGCGATTCATCCGCTTTGAAAAAGGAGCATCT
GCTGCTTGTTCTCCTCAACGCTGAGCGTGCCTGGGCCTTTGCCATGCACC
TGCAACAAGACGCAGCAGGCAATCAACACATGCCCAGCTACGTCCGATCA
CATCTCTTACGTCGTCTTCGCCGGGCGGGTGTGTGGGCGGCGCGATTATT
AGGGTTAGTAGAGGACGCCAGCGATCAGGTCACGGAGCGCACATCTCTGG
AAGTGCAGGCATACGCAGGGTGGATGGGGGCCGCGGTCGATGTGGAGCAG
GAAGAGTGGGGCCACGCTTTAGTGAAGCTACGCACCGGATACTCTATTCT
CAGCCAGTTGGGCGAGCTGGGTTCGTTGGAGGAGCAAGACTTGTTTCTAA
GCAAGGCAGACGAGGTTCTCCAGTCGGCACGCTACTGTCAGTACAATTTG
GGGGAGGGCTCTTTCGAAGACTTAAATCTAGATGTGGATACGAATGGAGC
GACAAAAAATATTCCCGAGGCACTGGTGGAGAAGCTGAATGCAGTCAAGG
AGGCTTCGCGGGCTGCGGCAGCCACGGGCTTGGAGACGGTTGATTGGGGG
GGACGGCAGCTGCATGTCTCAAGTAAGGAGGTTAGGCTCGCCTTGATCAA
GCTGGAAGAGGCTCGCACCGCTTTGGAGTCGTGGCTGGGATCGATGGCGG
GTGCCAAGATAAAGCAAGGCGTTGGGGGGGGGGGAGGGAAGAGCCCTACG
CCGCTGTCTTCGCGGCATATGGCGATGCTCTACAGCGGGTGGGCGAAGAG
GTGAGCAAACTCCAAAACATGAACTCGGGATCACGTGTCGAGGCACAGAA
GGACAATCTCCGGCTTTTGATGAGTTATCTCAAGCACGGGAAGCTCGAGA
CGATGCGAGTACGCAGCGAGGAGTTGATTCAGGCCATTCTTTGTGGGGGG
GACAGGTCAGGCAAGCGGGGCAGGCCCGAGGACCTGGTGCATATCCTGGA
GGGACTCATGCAGACAACGGCCGAAATGGAAGGTCTTCCAGGAGTAGAGG
ATCTCGAATCTGTCTTGGCGCGCACGCAGACTCTGCAGGCGCTCTATCGA
GCGCAGAGGCTCTTTTATCTGGGCGAATTTCACGCAACCAACTCGCGCGG
GAAGGGGCACTTGGCCGCCATGGCCTTATTTGAGCAAGCAGAAGAGCTTG
GGAGGGAGGTAGAAGTTCTGGCGCAGGAGATGGTGGCGGATGAGGGATCG
TCTGGGAAAGAGGAGTTGCTTGAGCGGGCCGGAATAGTTGTAAATATGGC
GCGAGGTGGGTGGTACCGTGCTCGTACCTCGAAATTTATGGCATCCTTGC
CTCTATCGACAGATGGCGCAGCTGTTGAGGACAAAGAGACGGCCTTTGTG
GCCTCGGTTTTGATGCTTTCCGTGTCAGCGCAGGCAAATCAGACAACAGG
GTTGCCAAGTACACTCGAGAGGAATAAGGGCAGGAAAGAGGCACAGGAAT
TTCGTCGAGGAAAGGGAGAGAAAGGAGAAAACCGGAAACAGATAAATGAA
GATGTAAGAGTTTCACAGTCGGAGCAAGCATTCCGGATGCTGTTGGACCG
CCTCGGAGATTTGGAGGCAGGGAAGGAGTCGAGTGACTTTAATATCTCTC
ATGTGCCGCCAGTGATAGCACCTGTGCGGGCCAAACCGCAGGTTTTCGAC
ATAGCCTTCAATTTTTTGGAGGAGCGTTTGCCGAGTTTGGCAGCAAGTGC
AGGGGTTTCCCAGACGTCAACTCGGGGAGCGGGGAGTGGTAGCAAGCGAG
ATTTTTTTGGATGGTTAAGAGGCTAATATTCGTCAAAAGAAATCAAGTGT
GATCATGTGTCAATGGCTTGATGTTTCGGGGAGAGATATCAATAGTACTG
CGTATTCAAGGTTTATGACGTATTTACCTACCCCTAGAAGAGCTAGGAAT
GAGTGATCAGTAGTTTTAACATTCATTTACTATGCTTTTGCGTTTCAAGA
CGGGAGCTAACAAGTCCATGAACGAGAAATGTGAAAAAACCTAGTGATTT
TCAAATAGAAAGCGGTGTGTGCTGTCGATGAAAGTTTTGCGCGTCCGCGA
AAAAATAAACATTCGGTAAATTAAGGATTTTACAAAAGGAATGACAATGA
ATATCAAGAATTTGTAAGATTATGCGACCATATTTTCATAAAAGTCAAAC
AAAGCATCTCTTTTGTCCTGGCTGGGGTCTGTCACACGAGTAGGGTTAGG
GTTGGGGTTAATTTAGGATTTACGGTCCGGGTTAGGGTTTGAGTTTGAGT
TTGGCTTCGAGAGAACCCTGTGTGGGGGCGTCAAGCTTTGTCAGCTTATC
TGGAGAGACTTGAAAATTTTGATTCTTGAAGACCAGAATATGAAGTTCAA
CTAATTACCTTGCAGCGTCTTAGAATGATATGACCGTCCAATTCTTTCTA
TTGATTTCTTTTGCCATTACGCACACTACACGTCGGTCCCCCAACAGCAT
TCCATATTTCGCATAATTTGTCTGATTTCACACATGGAAACAGCGCTTCT
CGC

protein sequence of rna5868

>rna5868-protein ID=rna5868-protein|Name=rna5868|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MTGGEEERHRRRREAKTVGRFEPGGLLASIVRFTSITSTGSWESLGPCSI
PSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV

mRNA from alignment at CM002466.1:1024270..1024576-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5868 ID=rna5868|Name=rna5868|organism=Nannochloropsis gaditana|type=mRNA|length=307bp|location=Sequence derived from alignment at CM002466.1:1024270..1024576- (Nannochloropsis gaditana)
ATGACCGGGGGAGAGGAGGAGCGTCATAGACGACGGAGAGAAGCCAAGAC
AGTCGGCAGATTTGAACCTGGTGGCCTGCTTGCAAGTATCGTTAGATTTA
CAAGTATCGTAGGATTTGTGTAAGATGCTGCTGAGACACTGCTGACGTGT
TGACGAGTAACAGACAAGCACAGGGTCATGGGAGAGTCTAGGTCCTTGCT
CGATTCCTTCGTACTTACCATGGCTTTTCGCGAGAAGCGCTGTTTCCATG
TGTGAAATCAGACAAATTATGCGAAATATGGAATGCTGTTGGGGGACCGA
CGTGTAG

Coding sequence (CDS) from alignment at CM002466.1:1024270..1024576-

>rna5868 ID=rna5868|Name=rna5868|organism=Nannochloropsis gaditana|type=CDS|length=504bp|location=Sequence derived from alignment at CM002466.1:1024270..1024576- (Nannochloropsis gaditana)
ACAAGCACAGGGTCATGGGAGAGTCTAGGTCCTTGCTCGATTCCTTCGTA
CTTACCATGGCTTTTCGCGAGAAGCGCTGTTTCCATGTGTGAAATCAGAC
AAATTATGCGAAATATGGAATGCTGTTGGGGGACCGACGTGTAGATGACC
GGGGGAGAGGAGGAGCGTCATAGACGACGGAGAGAAGCCAAGACAGTCGG
CAGATTTGAACCTGGTGGCCTGCTTGCAAGTATCGTTAGATTTACAAGTA
TCACAAGCACAGGGTCATGGGAGAGTCTAGGTCCTTGCTCGATTCCTTCG
TACTTACCATGGCTTTTCGCGAGAAGCGCTGTTTCCATGTGTGAAATCAG
ACAAATTATGCGAAATATGGAATGCTGTTGGGGGACCGACGTGTAGATGA
CCGGGGGAGAGGAGGAGCGTCATAGACGACGGAGAGAAGCCAAGACAGTC
GGCAGATTTGAACCTGGTGGCCTGCTTGCAAGTATCGTTAGATTTACAAG
TATC

Synonyms

Publications