EWM24821.1, cds5853 (CDS) Nannochloropsis gaditana

Overview
NameEWM24821.1
Unique Namecds5853
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1024469..1024576 -
Alignment locationCM002466.1:1024270..1024413 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24821.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100294g2.4561.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1024469..1024576 -
CM002466.1supercontigCM002466.1:1024270..1024413 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24821.1 vs. NCBI_GenBank
Match: gi|585106415|gb|EWM24821.1| (hypothetical protein Naga_100294g2 [Nannochloropsis gaditana])

HSP 1 Score: 170.629 bits (431), Expect = 6.575e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MTGGEEERHRRRREAKTVGRFEPGGLLASIVRFTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV 83
            MTGGEEERHRRRREAKTVGRFEPGGLLASIVRFTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV
Sbjct:    1 MTGGEEERHRRRREAKTVGRFEPGGLLASIVRFTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV 83          
BLAST of EWM24821.1 vs. NCBI_GenBank
Match: gi|585106400|gb|EWM24807.1| (hypothetical protein Naga_100628g6 [Nannochloropsis gaditana])

HSP 1 Score: 162.925 bits (411), Expect = 7.023e-51
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 0
Query:    1 MTGGEEERHRRRREAKTVGRFEPGGLLASIVRFTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV 83
            MTGGEEERHRR REAKTVGRFEPGGLLASI  FTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV
Sbjct:    1 MTGGEEERHRRWREAKTVGRFEPGGLLASIAGFTSITSTGSWESLGPCSIPSYLPWLFARSAVSMCEIRQIMRNMECCWGTDV 83          
The following BLAST results are available for this feature:
BLAST of EWM24821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106415|gb|EWM24821.1|6.575e-54100.00hypothetical protein Naga_100294g2 [Nannochloropsi... [more]
gi|585106400|gb|EWM24807.1|7.023e-5196.39hypothetical protein Naga_100628g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5868rna5868Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications