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Properties
| Property Name | Value |
|---|
| Product | cbs domain multi-pass transmembrane |
| Orig transcript id | gnl|cribi|Naga_101736g1.9854.mrna |
| Orig protein id | gnl|cribi|Naga_101736g1.9854 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:1019289..1021042 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5865 ID=rna5865|Name=rna5865|organism=Nannochloropsis gaditana|type=mRNA|length=483bp
ATGACTTCCATCTATACGTCGCCCCCCTTCTCCCCCTCCTCCGCCTCCCT
GGGCGTGCCCCTTTTGTCGTACACCCAGAGCCAGGACGACTCCGTTTCGC
CCGATGACCCCCAGGGCCACGCCTCGTATCACGGTGAGAGCATGATCAGC
GGGCAGGCGACGGGGTTGAGGGAGCCGCTTTTGCATCAGCGGGCGGTGAG
TGCAGATGCTGACAGCGGTGGAGGGGGCAGAGGCGGCGAAAGGGGGGGAA
AGCCAGAAGGGAGGGATGGAGAAAGCTACAGCGGGGGCGGAACGCGAGCT
CGGTCCCTGTCAGGTCCTGCAGAGGTCCAACAATGGCGACCCACTGAGCT
GCAGCAGTGCGGTGGGGAGGAAGTCGGTCGGGGAGAGCTTCAGGACGTGA
AGCTCAGGGGGTGCCACCCCATACCAGAGGACGGGGGCCTTGGTGGTCGG
GAGGAGGAAGAAAGAGTGAAAAGATATAGTTGA back to topprotein sequence of rna5865 >rna5865-protein ID=rna5865-protein|Name=rna5865|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDR
FFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASA
HAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLP
SSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQ
TTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHV
QRVLSHPCIRRLRPLLPPRLPPGQTPDRPGAGYPSEGRLAGPPTAPHRLP
PLPPHRPPQHLPRSPPPSRRLSIFSFSFSATALCSP back to topmRNA from alignment at CM002466.1:1019289..1021042- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5865 ID=rna5865|Name=rna5865|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp|location=Sequence derived from alignment at CM002466.1:1019289..1021042- (Nannochloropsis gaditana)
GTCCCGTCCTACGTGGCCGTCCTCCTCTCCGTGACCATGGTCCTGATCTT
TGGGGAGATTTTGCCGTCTGCGCTCTTCAGCGGGCCCAATCAACTCAAGG
TAGGTGCACGGCGGAGGTCGCCGACAGGTCGACATCTCTACCCATCCTCC
TCCTTCGTTTTCCCTCGCTCCTGCTCTCACACCACGACACACGCTCTGGC
CTCCTTCTGGCTCCAGATTGCCGCTCGTATGGCGTCCTTTGTGTGGTACG
TGGGCCTCCTCCCCGTTCCCTGTCGGCCCCCCTCACCCTGCCCTCTCCTC
AACCCTTCCCCTAGGTTCCTGATGCTCGTCCTCTCCCCCATCTCCTACCC
TTTGTCCTGGCTCCTGGACCGCTTCTTTGGGAGTCACAATCCTCGCAAGC
GTTATAATCGTGCGGAGCTCTCGGCGCTCATTGAGATACATCAAGTGAGC
CTCGTTGCCCTCCCCTCCCTCGATCTCCTCGCACCAGGGGGACTCGTCGC
GGGCCTCATACCGCCCTCCTCTCACGTCTCCCCCACAGGAGGTCAAGCGC
CGCAACATCTCTATCGTCTCGAGTGGACCGGGGCGCTCGAACAGCAACGG
CACGCACGCCTCCGCCCACGCCTACATGACTGCGTCCTCCGCTACCAGCG
CCCGAGCCGGCCTCCTCTCCCTCTCCCATCCCACCCAGGACCTTGGCGTC
GGCTCTCAGGGCGCTGGCGGGAAAAAGGGTGGGTCGGCCCGTCCCTTGTG
CCCTCCCTACCTGCCCTCCTCGCCCCTTCCCACCCTCCTTGATCGCTTGC
GCGCTGGAGTCTGTGTTCCTCTTTTGACTTCACGCCCTTCTCGTATCGTC
TTGGGGGTCCGCGCTCCACGCGTCCACGGGCACTACTGGCCGATGTGTGG
GTTGCTGCCGTCTCAGACGACTTCCCTCTACCCGTCCCTGCTTCCCCTCT
TTCCCTCCCTTTTTAGGAGGGAATCAGCACCGACAGGCCCATGCAGGGAA
GGACGCGCTCCTCTCGCAAGACGAGGTGGACATCGTGGTGGGGGTCTTGA
AGGTAAGAGAGGCGACTTAGAAGAGGAGGAAGCGAGGTCTCCCGTGGCTC
CCCTAGAGGTGGAGGGATTGTCACCCCACGCCCTCCCTTCTCCCCTTCCC
CCCCGAAGATCGCCTCCAAGACTGTGCAGGACTGCCTGGTGCCCATGGAG
AAGGTCTTTTGCCTTTCGACGCAGGACGCTCTTGACGCCTCTATGCTGGT
GGGGTGCCGGGGAGGAATGAGGGAGGGAGGCATAGGGAGGGAGGGAGGGC
TTAGGGAGGGAGGGATCAAAGGGACCTGAGACGCGAGCAAAGCTAACCAG
TCTCCCGTAATTCAAAGCTCACGTTCCTCTCCCACGCCCCCACTGCAGGC
GATGATCATGTCCAGCGGGTTCTCTCGCATCCCTGTATACGAAGGTAAGG
AGCGTCGCTTTCCCCTCCGCCTCCCTCCCTCCGTTCATCCTTCCTCGCCC
GTCCCCTCCCCCAGGCTCAGACCGCTCCTTCCTCCGCGGCTTCCTCCTGG
TCAAACGCCTGATCGTCCTGGAGCCGGCTACCCGTCGGAGGGTCGGCTCG
CTGGCCCTCCGACTGCCCCTCATCGTCTCCCCCCTCTGCCCCCTCATCGA
CCTCCTCAACACCTTCCAAGGTCACCCCCCCCGTCCCGTCGTCTGTCCAT
CTTTTCTTTCTCTTTCTCTGCCACTGCTCTTTGTTCTCCCTGAGTCGCAC
CCTC back to topCoding sequence (CDS) from alignment at CM002466.1:1019289..1021042- >rna5865 ID=rna5865|Name=rna5865|organism=Nannochloropsis gaditana|type=CDS|length=6066bp|location=Sequence derived from alignment at CM002466.1:1019289..1021042- (Nannochloropsis gaditana)
GCTCAGACCGCTCCTTCCTCCGCGGCTTCCTCCTGGTCAAACGCCTGATC
GTCCTGGAGCCGGCTACCCGTCGGAGGGTCGGCTCGCTGGCCCTCCGACT
GCCCCTCATCGTCTCCCCCCTCTGCCCCCTCATCGACCTCCTCAACACCT
TCCAAGGTCACCCCCCCCGTCCCGTCGTCTGTCCATCTTTTCTTTCTCTT
TCTCTGCCACTGCTCTTTGTTCTCCCTGAGCGATGATCATGTCCAGCGGG
TTCTCTCGCATCCCTGTATACGAAGGAGGTCAAGCGCCGCAACATCTCTA
TCGTCTCGAGTGGACCGGGGCGCTCGAACAGCAACGGCACGCACGCCTCC
GCCCACGCCTACATGACTGCGTCCTCCGCTACCAGCGCCCGAGCCGGCCT
CCTCTCCCTCTCCCATCCCACCCAGGACCTTGGCGTCGGCTCTCAGGGCG
CTGGCGGGAAAAAGGGTGGGTCGGCCCGTCCCTTGTGCCCTCCCTACCTG
CCCTCCTCGCCCCTTCCCACCCTCCTTGATCGCTTGCGCGCTGGAGTCTG
TGTTCCTCTTTTGACTTCACGCCCTTCTCGTATCGTCTTGGGGGTCCGCG
CTCCACGCGTCCACGGGCACTACTGGCCGATGTGTGGGTTGCTGCCGTCT
CAGACGACTTCCCTCTACCCGTCCCTGCTTCCCCTCTTTCCCTCCCTTTT
TAGGAGGGAATCAGCACCGACAGGCCCATGCAGGGAAGGACGCGCTCCTC
TCGCAAGACGAGGTGGACATCGTGGTGGGGGTCTTGAAGGTTCCTGATGC
TCGTCCTCTCCCCCATCTCCTACCCTTTGTCCTGGCTCCTGGACCGCTTC
TTTGGGAGTCACAATCCTCGCAAGCGTTATAATCGTGCGGAGCTCTCGGC
GCTCATTGAGATACATCAAATTGCCGCTCGTATGGCGTCCTTTGTGTGAT
GGTCCTGATCTTTGGGGAGATTTTGCCGTCTGCGCTCTTCAGCGGGCCCA
ATCAACTCAAGGCTCAGACCGCTCCTTCCTCCGCGGCTTCCTCCTGGTCA
AACGCCTGATCGTCCTGGAGCCGGCTACCCGTCGGAGGGTCGGCTCGCTG
GCCCTCCGACTGCCCCTCATCGTCTCCCCCCTCTGCCCCCTCATCGACCT
CCTCAACACCTTCCAAGGTCACCCCCCCCGTCCCGTCGTCTGTCCATCTT
TTCTTTCTCTTTCTCTGCCACTGCTCTTTGTTCTCCCTGAGCGATGATCA
TGTCCAGCGGGTTCTCTCGCATCCCTGTATACGAAGGAGGTCAAGCGCCG
CAACATCTCTATCGTCTCGAGTGGACCGGGGCGCTCGAACAGCAACGGCA
CGCACGCCTCCGCCCACGCCTACATGACTGCGTCCTCCGCTACCAGCGCC
CGAGCCGGCCTCCTCTCCCTCTCCCATCCCACCCAGGACCTTGGCGTCGG
CTCTCAGGGCGCTGGCGGGAAAAAGGGTGGGTCGGCCCGTCCCTTGTGCC
CTCCCTACCTGCCCTCCTCGCCCCTTCCCACCCTCCTTGATCGCTTGCGC
GCTGGAGTCTGTGTTCCTCTTTTGACTTCACGCCCTTCTCGTATCGTCTT
GGGGGTCCGCGCTCCACGCGTCCACGGGCACTACTGGCCGATGTGTGGGT
TGCTGCCGTCTCAGACGACTTCCCTCTACCCGTCCCTGCTTCCCCTCTTT
CCCTCCCTTTTTAGGAGGGAATCAGCACCGACAGGCCCATGCAGGGAAGG
ACGCGCTCCTCTCGCAAGACGAGGTGGACATCGTGGTGGGGGTCTTGAAG
GTTCCTGATGCTCGTCCTCTCCCCCATCTCCTACCCTTTGTCCTGGCTCC
TGGACCGCTTCTTTGGGAGTCACAATCCTCGCAAGCGTTATAATCGTGCG
GAGCTCTCGGCGCTCATTGAGATACATCAAATTGCCGCTCGTATGGCGTC
CTTTGTGTGATGGTCCTGATCTTTGGGGAGATTTTGCCGTCTGCGCTCTT
CAGCGGGCCCAATCAACTCAAGGCTCAGACCGCTCCTTCCTCCGCGGCTT
CCTCCTGGTCAAACGCCTGATCGTCCTGGAGCCGGCTACCCGTCGGAGGG
TCGGCTCGCTGGCCCTCCGACTGCCCCTCATCGTCTCCCCCCTCTGCCCC
CTCATCGACCTCCTCAACACCTTCCAAGGTCACCCCCCCCGTCCCGTCGT
CTGTCCATCTTTTCTTTCTCTTTCTCTGCCACTGCTCTTTGTTCTCCCTG
AGCGATGATCATGTCCAGCGGGTTCTCTCGCATCCCTGTATACGAAGGAG
GTCAAGCGCCGCAACATCTCTATCGTCTCGAGTGGACCGGGGCGCTCGAA
CAGCAACGGCACGCACGCCTCCGCCCACGCCTACATGACTGCGTCCTCCG
CTACCAGCGCCCGAGCCGGCCTCCTCTCCCTCTCCCATCCCACCCAGGAC
CTTGGCGTCGGCTCTCAGGGCGCTGGCGGGAAAAAGGGTGGGTCGGCCCG
TCCCTTGTGCCCTCCCTACCTGCCCTCCTCGCCCCTTCCCACCCTCCTTG
ATCGCTTGCGCGCTGGAGTCTGTGTTCCTCTTTTGACTTCACGCCCTTCT
CGTATCGTCTTGGGGGTCCGCGCTCCACGCGTCCACGGGCACTACTGGCC
GATGTGTGGGTTGCTGCCGTCTCAGACGACTTCCCTCTACCCGTCCCTGC
TTCCCCTCTTTCCCTCCCTTTTTAGGAGGGAATCAGCACCGACAGGCCCA
TGCAGGGAAGGACGCGCTCCTCTCGCAAGACGAGGTGGACATCGTGGTGG
GGGTCTTGAAGGTTCCTGATGCTCGTCCTCTCCCCCATCTCCTACCCTTT
GTCCTGGCTCCTGGACCGCTTCTTTGGGAGTCACAATCCTCGCAAGCGTT
ATAATCGTGCGGAGCTCTCGGCGCTCATTGAGATACATCAAATTGCCGCT
CGTATGGCGTCCTTTGTGTGATGGTCCTGATCTTTGGGGAGATTTTGCCG
TCTGCGCTCTTCAGCGGGCCCAATCAACTCAAGGCTCAGACCGCTCCTTC
CTCCGCGGCTTCCTCCTGGTCAAACGCCTGATCGTCCTGGAGCCGGCTAC
CCGTCGGAGGGTCGGCTCGCTGGCCCTCCGACTGCCCCTCATCGTCTCCC
CCCTCTGCCCCCTCATCGACCTCCTCAACACCTTCCAAGGTCACCCCCCC
CGTCCCGTCGTCTGTCCATCTTTTCTTTCTCTTTCTCTGCCACTGCTCTT
TGTTCTCCCTGAGCGATGATCATGTCCAGCGGGTTCTCTCGCATCCCTGT
ATACGAAGGAGGTCAAGCGCCGCAACATCTCTATCGTCTCGAGTGGACCG
GGGCGCTCGAACAGCAACGGCACGCACGCCTCCGCCCACGCCTACATGAC
TGCGTCCTCCGCTACCAGCGCCCGAGCCGGCCTCCTCTCCCTCTCCCATC
CCACCCAGGACCTTGGCGTCGGCTCTCAGGGCGCTGGCGGGAAAAAGGGT
GGGTCGGCCCGTCCCTTGTGCCCTCCCTACCTGCCCTCCTCGCCCCTTCC
CACCCTCCTTGATCGCTTGCGCGCTGGAGTCTGTGTTCCTCTTTTGACTT
CACGCCCTTCTCGTATCGTCTTGGGGGTCCGCGCTCCACGCGTCCACGGG
CACTACTGGCCGATGTGTGGGTTGCTGCCGTCTCAGACGACTTCCCTCTA
CCCGTCCCTGCTTCCCCTCTTTCCCTCCCTTTTTAGGAGGGAATCAGCAC
CGACAGGCCCATGCAGGGAAGGACGCGCTCCTCTCGCAAGACGAGGTGGA
CATCGTGGTGGGGGTCTTGAAGGTTCCTGATGCTCGTCCTCTCCCCCATC
TCCTACCCTTTGTCCTGGCTCCTGGACCGCTTCTTTGGGAGTCACAATCC
TCGCAAGCGTTATAATCGTGCGGAGCTCTCGGCGCTCATTGAGATACATC
AAATTGCCGCTCGTATGGCGTCCTTTGTGTGATGGTCCTGATCTTTGGGG
AGATTTTGCCGTCTGCGCTCTTCAGCGGGCCCAATCAACTCAAGGCTCAG
ACCGCTCCTTCCTCCGCGGCTTCCTCCTGGTCAAACGCCTGATCGTCCTG
GAGCCGGCTACCCGTCGGAGGGTCGGCTCGCTGGCCCTCCGACTGCCCCT
CATCGTCTCCCCCCTCTGCCCCCTCATCGACCTCCTCAACACCTTCCAAG
GTCACCCCCCCCGTCCCGTCGTCTGTCCATCTTTTCTTTCTCTTTCTCTG
CCACTGCTCTTTGTTCTCCCTGAGCGATGATCATGTCCAGCGGGTTCTCT
CGCATCCCTGTATACGAAGGAGGTCAAGCGCCGCAACATCTCTATCGTCT
CGAGTGGACCGGGGCGCTCGAACAGCAACGGCACGCACGCCTCCGCCCAC
GCCTACATGACTGCGTCCTCCGCTACCAGCGCCCGAGCCGGCCTCCTCTC
CCTCTCCCATCCCACCCAGGACCTTGGCGTCGGCTCTCAGGGCGCTGGCG
GGAAAAAGGGTGGGTCGGCCCGTCCCTTGTGCCCTCCCTACCTGCCCTCC
TCGCCCCTTCCCACCCTCCTTGATCGCTTGCGCGCTGGAGTCTGTGTTCC
TCTTTTGACTTCACGCCCTTCTCGTATCGTCTTGGGGGTCCGCGCTCCAC
GCGTCCACGGGCACTACTGGCCGATGTGTGGGTTGCTGCCGTCTCAGACG
ACTTCCCTCTACCCGTCCCTGCTTCCCCTCTTTCCCTCCCTTTTTAGGAG
GGAATCAGCACCGACAGGCCCATGCAGGGAAGGACGCGCTCCTCTCGCAA
GACGAGGTGGACATCGTGGTGGGGGTCTTGAAGGTTCCTGATGCTCGTCC
TCTCCCCCATCTCCTACCCTTTGTCCTGGCTCCTGGACCGCTTCTTTGGG
AGTCACAATCCTCGCAAGCGTTATAATCGTGCGGAGCTCTCGGCGCTCAT
TGAGATACATCAAATTGCCGCTCGTATGGCGTCCTTTGTGTGATGGTCCT
GATCTTTGGGGAGATTTTGCCGTCTGCGCTCTTCAGCGGGCCCAATCAAC
TCAAGGCTCAGACCGCTCCTTCCTCCGCGGCTTCCTCCTGGTCAAACGCC
TGATCGTCCTGGAGCCGGCTACCCGTCGGAGGGTCGGCTCGCTGGCCCTC
CGACTGCCCCTCATCGTCTCCCCCCTCTGCCCCCTCATCGACCTCCTCAA
CACCTTCCAAGGTCACCCCCCCCGTCCCGTCGTCTGTCCATCTTTTCTTT
CTCTTTCTCTGCCACTGCTCTTTGTTCTCCCTGAGCGATGATCATGTCCA
GCGGGTTCTCTCGCATCCCTGTATACGAAGGAGGTCAAGCGCCGCAACAT
CTCTATCGTCTCGAGTGGACCGGGGCGCTCGAACAGCAACGGCACGCACG
CCTCCGCCCACGCCTACATGACTGCGTCCTCCGCTACCAGCGCCCGAGCC
GGCCTCCTCTCCCTCTCCCATCCCACCCAGGACCTTGGCGTCGGCTCTCA
GGGCGCTGGCGGGAAAAAGGGTGGGTCGGCCCGTCCCTTGTGCCCTCCCT
ACCTGCCCTCCTCGCCCCTTCCCACCCTCCTTGATCGCTTGCGCGCTGGA
GTCTGTGTTCCTCTTTTGACTTCACGCCCTTCTCGTATCGTCTTGGGGGT
CCGCGCTCCACGCGTCCACGGGCACTACTGGCCGATGTGTGGGTTGCTGC
CGTCTCAGACGACTTCCCTCTACCCGTCCCTGCTTCCCCTCTTTCCCTCC
CTTTTTAGGAGGGAATCAGCACCGACAGGCCCATGCAGGGAAGGACGCGC
TCCTCTCGCAAGACGAGGTGGACATCGTGGTGGGGGTCTTGAAGGTTCCT
GATGCTCGTCCTCTCCCCCATCTCCTACCCTTTGTCCTGGCTCCTGGACC
GCTTCTTTGGGAGTCACAATCCTCGCAAGCGTTATAATCGTGCGGAGCTC
TCGGCGCTCATTGAGATACATCAAATTGCCGCTCGTATGGCGTCCTTTGT
GTGATGGTCCTGATCTTTGGGGAGATTTTGCCGTCTGCGCTCTTCAGCGG
GCCCAATCAACTCAAG back to top
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