EWM24823.1, cds5850 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|585106418|gb|EWM24823.1| (cbs domain multi-pass transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHVQRVLSHPCIRRLRPLLPPRLPPGQTPDRPGAGYPSEGRLAGPPTAPHRLPPLPPHRPPQHLPRSPPPSRRLSIFSFSFSATALCSP 336
MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHVQRVLSHPCIRRLRPLLPPRLPPGQTPDRPGAGYPSEGRLAGPPTAPHRLPPLPPHRPPQHLPRSPPPSRRLSIFSFSFSATALCSP
Sbjct: 1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHVQRVLSHPCIRRLRPLLPPRLPPGQTPDRPGAGYPSEGRLAGPPTAPHRLPPLPPHRPPQHLPRSPPPSRRLSIFSFSFSATALCSP 336
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|585106417|gb|EWM24822.1| (cbs domain multi-pass transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 483.797 bits (1244), Expect = 1.526e-170 Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 0
Query: 1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHVQ 251
MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLE D +Q
Sbjct: 1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLE--DRLQ 249
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|298711109|emb|CBJ32337.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.0561 bits (240), Expect = 1.420e-18 Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 0
Query: 1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNIS 82
+VL FGEI PSA+F+G NQL IA+ M+ V+ LM+VL P+++P++W+LDR G KRYNRAE+SAL+E+ QE+ +++
Sbjct: 301 LVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGIEG-FKRYNRAEISALVEVQQELSCEDVT 381
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|553194197|ref|XP_005855903.1| (magnesium and cobalt efflux protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293147|gb|EKU20447.1| magnesium and cobalt efflux protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 92.8189 bits (229), Expect = 2.983e-17 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGS-HNPRKRYNRAELSALIEIHQEVKR 78
VL FGEI PSA+F GPNQLK+ +RM VW L+ PI+ P++W LDRF G H KRY+R ELSAL+EIH + +R
Sbjct: 299 VLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLGDEHGHGKRYSREELSALMEIHLKQRR 376
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|585100593|gb|EWM20734.1| (protein of unknown function DUF21 [Nannochloropsis gaditana]) HSP 1 Score: 93.2041 bits (230), Expect = 3.198e-17 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGS-HNPRKRYNRAELSALIEIHQEVKR 78
VL FGEI PSA+F GPNQLK+ +RM VW L+ PI+ P++W LDRF G H KRY+R ELSAL+EIH + +R
Sbjct: 314 VLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLGDEHGHGKRYSREELSALMEIHLKQRR 391
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|585108725|gb|EWM26637.1| (protein mam3 [Nannochloropsis gaditana]) HSP 1 Score: 92.4337 bits (228), Expect = 5.311e-17 Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEV 76
+LIFGEI+PSA+F+GPNQ+ +AA + FV+FLM V PI+YP+ +LD++ G HN KRY R ELS L+++ +EV
Sbjct: 114 ILIFGEIIPSAIFTGPNQIIMAAHFSGFVYFLMGVFWPIAYPIGKVLDKWLG-HNSFKRYTREELSTLVDLQREV 187
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|325180719|emb|CCA15125.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 89.3521 bits (220), Expect = 4.112e-16 Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKR 78
VL+FGEILPSA+F+GP QL+IAA ++ V FLM++ SPISYPLS +LD FG + ++Y R EL ALI + +E ++
Sbjct: 114 VLLFGEILPSAIFTGPQQLQIAASLSPLVKFLMIITSPISYPLSKVLDYCFGDDHALQKYKRNELKALIALQKESQQ 190
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|635362998|emb|CCI48374.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 88.5817 bits (218), Expect = 7.693e-16 Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQE 75
VL+FGEILPSA+F+GP QL+IAA ++ V FLM+V SPISYP+S +LD FG + ++Y R EL ALI + +E
Sbjct: 114 VLLFGEILPSAIFTGPQQLQIAAFLSPLVKFLMIVTSPISYPISKVLDYCFGDDHALQKYKRNELKALIALQKE 187
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|953495615|emb|CEG42511.1| (hypothetical protein L916_03792 [Plasmopara halstedii]) HSP 1 Score: 85.8853 bits (211), Expect = 6.606e-15 Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQE--VKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLS 118
VL+FGEI+PSA+F+GPNQL+IAA + FV LM + PI+YP+S +LD + G + +Y R E+ AL+ + +E RR+ + R + TH+ A MT SA S R LL+
Sbjct: 81 VLLFGEIIPSAVFTGPNQLRIAAILCPFVKVLMAITFPIAYPISRVLDMWLGDDHDPAQYKRKEIKALVTLQRENDAARRSFADHLRQSQRLHDTPTHSQA---MTTMSAISDRQPLLT 196
BLAST of EWM24823.1 vs. NCBI_GenBank
Match: gi|1134882385|gb|OMJ79971.1| (hypothetical protein SteCoe_19889 [Stentor coeruleus]) HSP 1 Score: 84.3445 bits (207), Expect = 1.611e-14 Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 0
Query: 2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHAS 99
VL+FGE+LP AL +GP+QLKIA+ + V L++VL PISYP++ LLD FFG H K+ +L LI +H ++N SG N H +
Sbjct: 121 VLVFGEVLPQALCTGPDQLKIASNLCPMVRLLIIVLFPISYPIAKLLDYFFGHHQKVKKLRNEDLKTLITLHHSFAKKNEERSYSGLVTGQINIIHGT 218 The following BLAST results are available for this feature:
BLAST of EWM24823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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