rna5864, rna5864 (mRNA) Nannochloropsis gaditana

Overview
Namerna5864
Unique Namerna5864
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationCM002466.1:1017744..1018226 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100234g11.1030.mrna
Orig protein idgnl|cribi|Naga_100234g11.1030
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1017744..1018226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100234g11gene5660Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24826.1cds5849Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5864rna5864-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5864 ID=rna5864|Name=rna5864|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGCTGACTTTCCCGTGTATAATAGCAGGAGCAAAATCTCGTCATAAGTC
ATGCTTACGGTGCGGGGATACAGAGTTGCGAAGGTGTTCCAATTTGCAAG
CGAAGGACTCCCTTCAGGATGAGGCACAGGGGTACGTGGCAAGTACTCTC
TCTCTGAGGAGGCAAGACGGCCCGTCATACCGCTATGGCCTCGTGTATTT
ACTTTGGAGAGCAGTGTGCAGCGAGAATGAAAGAAAACTATAG
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protein sequence of rna5864

>rna5864-protein ID=rna5864-protein|Name=rna5864|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MTSIYTSPPFSPSSASLGVPLLSYTQSQDDSVSPDDPQGHASYHGESMIS
GQATGLREPLLHQRAVSADADSGGGGRGGERGGKPEGRDGESYSGGGTRA
RSLSGPAEVQQWRPTELQQCGGEEVGRGELQDVKLRGCHPIPEDGGLGGR
EEEERVKRYS
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mRNA from alignment at CM002466.1:1017744..1018226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5864 ID=rna5864|Name=rna5864|organism=Nannochloropsis gaditana|type=mRNA|length=483bp|location=Sequence derived from alignment at CM002466.1:1017744..1018226- (Nannochloropsis gaditana)
ATGACTTCCATCTATACGTCGCCCCCCTTCTCCCCCTCCTCCGCCTCCCT
GGGCGTGCCCCTTTTGTCGTACACCCAGAGCCAGGACGACTCCGTTTCGC
CCGATGACCCCCAGGGCCACGCCTCGTATCACGGTGAGAGCATGATCAGC
GGGCAGGCGACGGGGTTGAGGGAGCCGCTTTTGCATCAGCGGGCGGTGAG
TGCAGATGCTGACAGCGGTGGAGGGGGCAGAGGCGGCGAAAGGGGGGGAA
AGCCAGAAGGGAGGGATGGAGAAAGCTACAGCGGGGGCGGAACGCGAGCT
CGGTCCCTGTCAGGTCCTGCAGAGGTCCAACAATGGCGACCCACTGAGCT
GCAGCAGTGCGGTGGGGAGGAAGTCGGTCGGGGAGAGCTTCAGGACGTGA
AGCTCAGGGGGTGCCACCCCATACCAGAGGACGGGGGCCTTGGTGGTCGG
GAGGAGGAAGAAAGAGTGAAAAGATATAGTTGA
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Coding sequence (CDS) from alignment at CM002466.1:1017744..1018226-

>rna5864 ID=rna5864|Name=rna5864|organism=Nannochloropsis gaditana|type=CDS|length=483bp|location=Sequence derived from alignment at CM002466.1:1017744..1018226- (Nannochloropsis gaditana)
ATGACTTCCATCTATACGTCGCCCCCCTTCTCCCCCTCCTCCGCCTCCCT
GGGCGTGCCCCTTTTGTCGTACACCCAGAGCCAGGACGACTCCGTTTCGC
CCGATGACCCCCAGGGCCACGCCTCGTATCACGGTGAGAGCATGATCAGC
GGGCAGGCGACGGGGTTGAGGGAGCCGCTTTTGCATCAGCGGGCGGTGAG
TGCAGATGCTGACAGCGGTGGAGGGGGCAGAGGCGGCGAAAGGGGGGGAA
AGCCAGAAGGGAGGGATGGAGAAAGCTACAGCGGGGGCGGAACGCGAGCT
CGGTCCCTGTCAGGTCCTGCAGAGGTCCAACAATGGCGACCCACTGAGCT
GCAGCAGTGCGGTGGGGAGGAAGTCGGTCGGGGAGAGCTTCAGGACGTGA
AGCTCAGGGGGTGCCACCCCATACCAGAGGACGGGGGCCTTGGTGGTCGG
GAGGAGGAAGAAAGAGTGAAAAGATATAGTTGA
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Synonyms
Publications