EWM24826.1, cds5849 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24826.1
Unique Name	cds5849
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:1017744..1018226 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24826.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100234g11.1030.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:1017744..1018226 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM24826.1 vs. NCBI_GenBank
Match: gi|585106422|gb|EWM24826.1| (hypothetical protein Naga_100234g11 [Nannochloropsis gaditana])

HSP 1 Score: 315.849 bits (808), Expect = 7.740e-109
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query:    1 MTSIYTSPPFSPSSASLGVPLLSYTQSQDDSVSPDDPQGHASYHGESMISGQATGLREPLLHQRAVSADADSGGGGRGGERGGKPEGRDGESYSGGGTRARSLSGPAEVQQWRPTELQQCGGEEVGRGELQDVKLRGCHPIPEDGGLGGREEEERVKRYS 160
            MTSIYTSPPFSPSSASLGVPLLSYTQSQDDSVSPDDPQGHASYHGESMISGQATGLREPLLHQRAVSADADSGGGGRGGERGGKPEGRDGESYSGGGTRARSLSGPAEVQQWRPTELQQCGGEEVGRGELQDVKLRGCHPIPEDGGLGGREEEERVKRYS
Sbjct:    1 MTSIYTSPPFSPSSASLGVPLLSYTQSQDDSVSPDDPQGHASYHGESMISGQATGLREPLLHQRAVSADADSGGGGRGGERGGKPEGRDGESYSGGGTRARSLSGPAEVQQWRPTELQQCGGEEVGRGELQDVKLRGCHPIPEDGGLGGREEEERVKRYS 160

The following BLAST results are available for this feature:

BLAST of EWM24826.1 vs. NCBI_GenBank

BLAST of EWM24826.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106422\|gb\|EWM24826.1\|	7.740e-109	100.00	hypothetical protein Naga_100234g11 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5864	rna5864	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications